DY256946

Overview
NameDY256946
Unique NameDY256946
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length788
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY256946 vs. ExPASy Swiss-Prot
Match: FUMC_RHIME (Fumarate hydratase class II OS=Rhizobium meliloti GN=fumC PE=3 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 7.556e-30
Identity = 65/113 (57.52%), Postives = 81/113 (71.68%), Query Frame = 3
Query:    9 GSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPS 347
            GS GHFELNV+ P++A   L S++LL DA+ SF  NCV GI+A  + I   L  SLMLVT+L PKIGYDNAA +AK AHK GTTL++ A+  G +  EEFD +V PE MIGP+
Sbjct:  351 GSQGHFELNVYNPLMAYNFLQSVQLLADAAISFTDNCVVGIEAREDNIKAALDRSLMLVTALAPKIGYDNAAKIAKTAHKNGTTLREEAVGGGYVTDEEFDAVVRPETMIGPA 463          
BLAST of DY256946 vs. ExPASy Swiss-Prot
Match: FUMC_BACAN (Fumarate hydratase class II OS=Bacillus anthracis GN=fumC PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 9.869e-30
Identity = 65/113 (57.52%), Postives = 83/113 (73.45%), Query Frame = 3
Query:   12 SNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPSD 350
            S G+FELNVFKP+IA   L S  LL DA  SF  NC  GI+A+ E I + ++ SLMLVT+LNP IGY+NAA +AK AHKEG TLK+AAL+ G+L  E+F+ +V P+KMI P +
Sbjct:  350 SQGNFELNVFKPVIAYNFLQSAHLLADAIVSFNDNCAVGIEADEEIIKENVNRSLMLVTALNPHIGYENAAKIAKHAHKEGLTLKEAALQSGLLTEEQFNEIVDPKKMIAPKE 462          
BLAST of DY256946 vs. ExPASy Swiss-Prot
Match: FUMC_PASMU (Fumarate hydratase class II OS=Pasteurella multocida GN=fumC PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.289e-29
Identity = 62/111 (55.86%), Postives = 83/111 (74.77%), Query Frame = 3
Query:    9 GSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG 341
            G+ GHF+LNVFKP++A+  L S +LL DA  SF+++C  GI+ N  RI K L +SLMLVT+LN  IGY+NAA +AK AHK GTTLK+ A+ LG++ +E+FD  V PE M+G
Sbjct:  351 GTQGHFQLNVFKPVMAANFLQSAQLLADACVSFDEHCAVGIEPNFPRIKKQLDDSLMLVTALNTHIGYENAAKIAKTAHKNGTTLKEEAINLGLVTAEQFDEWVRPEDMVG 461          
BLAST of DY256946 vs. ExPASy Swiss-Prot
Match: FUMC_AGRT5 (Fumarate hydratase class II OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=fumC PE=3 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 1.289e-29
Identity = 65/112 (58.04%), Postives = 80/112 (71.43%), Query Frame = 3
Query:    9 GSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 344
            GS GHFELNV+ PM+A   L S++LLGDA+ SF  NCV GI+A  + I K +  SLMLVT+LN K+GYD  A +AK AHK GTTL++ A+  G L +EEFD  V PE MIGP
Sbjct:  351 GSQGHFELNVYNPMMAYNFLQSVQLLGDAAVSFTDNCVVGIEAREDNIRKGVENSLMLVTALNGKLGYDICAKIAKTAHKNGTTLREEAVGGGYLTNEEFDQYVRPENMIGP 462          
BLAST of DY256946 vs. ExPASy Swiss-Prot
Match: FUMC_COXBU (Fumarate hydratase class II OS=Coxiella burnetii GN=fumC PE=3 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 2.871e-29
Identity = 63/112 (56.25%), Postives = 85/112 (75.89%), Query Frame = 3
Query:    3 VGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMI 338
            + GS G+FELNV+KP++A  L+ S+ LL DA  SF  +C  GI+ N+E+I+  L+ SLMLVT+LN  IGYD A+ +AKKA+KEGTTLK+AAL+LG L + EFD  V P+KM+
Sbjct:  346 IAGSQGNFELNVYKPVMAYNLIQSIYLLSDACRSFNDHCAVGIKPNQEKINDYLNNSLMLVTALNQIIGYDKASEIAKKAYKEGTTLKEAALQLGYLTASEFDKAVDPKKMV 457          
BLAST of DY256946 vs. ExPASy Swiss-Prot
Match: FUMC_THEEB (Fumarate hydratase class II OS=Thermosynechococcus elongatus (strain BP-1) GN=fumC PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.397e-29
Identity = 63/113 (55.75%), Postives = 84/113 (74.34%), Query Frame = 3
Query:    3 VGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG 341
            + GS G+FELNV+KP+I   +L S+ LL DA+ SF  +C+ G++ NR++I   +  SLMLVT+LNP IGYD AAAVAKKA+ EG TLK+AA++LG L +EEFD  V  E M+G
Sbjct:  350 IAGSQGNFELNVYKPLIIYNVLQSIALLSDAAQSFTDHCLVGVEPNRQQIQAYVERSLMLVTALNPHIGYDKAAAVAKKAYSEGKTLKEAAVELGYLTAEEFDRWVRLELMLG 462          
BLAST of DY256946 vs. ExPASy Swiss-Prot
Match: FUMC_HAEDU (Fumarate hydratase class II OS=Haemophilus ducreyi GN=fumC PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.397e-29
Identity = 60/111 (54.05%), Postives = 81/111 (72.97%), Query Frame = 3
Query:    9 GSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG 341
            GS GHF+LNVFKP++A+  L S +LL D   SF+++C  GI+ N  RI + L  SLMLVT+LN  IGY+NAA +AK AHK GTTLK+ A+ LG++ +E+FD  V P+ M+G
Sbjct:  351 GSQGHFQLNVFKPVMAANFLQSAQLLADVCISFDEHCASGIEPNYPRIQQQLENSLMLVTALNTHIGYENAAKIAKTAHKNGTTLKEEAINLGLVTAEQFDQWVRPQNMVG 461          
BLAST of DY256946 vs. ExPASy Swiss-Prot
Match: FUMC_WIGBR (Fumarate hydratase class II OS=Wigglesworthia glossinidia brevipalpis GN=fumC PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 8.355e-29
Identity = 64/113 (56.64%), Postives = 79/113 (69.91%), Query Frame = 3
Query:    3 VGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG 341
            +GG +G+F+LNVF+PMI    L S+R+L D   SF K CV GI+ N +RI K L ESLMLVTSL P IGYD +A +AK AH E  TLK+A LKL  ++  +FD LV PE MIG
Sbjct:  349 IGGLSGNFQLNVFRPMIIYNFLQSVRILSDGIKSFNKKCVIGIKPNIKRIKKFLKESLMLVTSLTPHIGYDKSAKIAKLAHNENITLKEACLKLNYISESQFDILVRPENMIG 461          
BLAST of DY256946 vs. ExPASy Swiss-Prot
Match: FUMC_HAEIN (Fumarate hydratase class II OS=Haemophilus influenzae GN=fumC PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 8.355e-29
Identity = 60/111 (54.05%), Postives = 82/111 (73.87%), Query Frame = 3
Query:    9 GSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG 341
            GS GHF+LNVF P++ +  L S +LLGDA  SF+++C  GI+ N  RI + L  SLMLVT+LN  IGY+NAA +AK AHK GTTL++ A+ LG++++E+FD  V PE M+G
Sbjct:  351 GSQGHFQLNVFNPVMIANFLQSAQLLGDACVSFDEHCAVGIEPNYPRIKQQLENSLMLVTALNTHIGYENAAKIAKTAHKNGTTLREEAINLGLVSAEDFDKWVRPEDMVG 461          
BLAST of DY256946 vs. ExPASy Swiss-Prot
Match: FUMC_NEIMA (Fumarate hydratase class II OS=Neisseria meningitidis serogroup A GN=fumC PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.091e-28
Identity = 63/114 (55.26%), Postives = 84/114 (73.68%), Query Frame = 3
Query:    3 VGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 344
            + G++G+FELNV+ P+IA  LL S+RLLGDA  SF ++C  GI+   E+I   LH SLMLVT+LN KIGY+NAA VAK A+K   +L++ A++LG+L  EEFD LVVP  M+ P
Sbjct:  348 MAGASGNFELNVYMPVIAYNLLQSIRLLGDACNSFNEHCAVGIEPVPEKIDYFLHHSLMLVTALNRKIGYENAAKVAKTAYKNNKSLRETAVELGLLTGEEFDELVVPADMVHP 461          
The following BLAST results are available for this feature:
BLAST of DY256946 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
FUMC_RHIME7.556e-3057.52Fumarate hydratase class II OS=Rhizobium meliloti ... [more]
FUMC_BACAN9.869e-3057.52Fumarate hydratase class II OS=Bacillus anthracis ... [more]
FUMC_PASMU1.289e-2955.86Fumarate hydratase class II OS=Pasteurella multoci... [more]
FUMC_AGRT51.289e-2958.04Fumarate hydratase class II OS=Agrobacterium tumef... [more]
FUMC_COXBU2.871e-2956.25Fumarate hydratase class II OS=Coxiella burnetii G... [more]
FUMC_THEEB6.397e-2955.75Fumarate hydratase class II OS=Thermosynechococcus... [more]
FUMC_HAEDU6.397e-2954.05Fumarate hydratase class II OS=Haemophilus ducreyi... [more]
FUMC_WIGBR8.355e-2956.64Fumarate hydratase class II OS=Wigglesworthia glos... [more]
FUMC_HAEIN8.355e-2954.05Fumarate hydratase class II OS=Haemophilus influen... [more]
FUMC_NEIMA1.091e-2855.26Fumarate hydratase class II OS=Neisseria meningiti... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA3AD06ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256946 ID=DY256946; Name=DY256946; organism=Citrus clementina; type=EST; length=788bp
CAGTGGGTGGATCAAATGGCCATTTTGAACTAAATGTATTCAAGCCAATG
ATTGCTAGTGGTCTCCTACATTCACTGAGATTGCTGGGAGATGCATCTGC
TTCTTTTGAGAAGAACTGTGTGAGAGGAATTCAAGCTAATAGGGAAAGGA
TTTCCAAATTGCTGCACGAGTCATTGATGCTTGTCACATCCTTGAATCCT
AAAATTGGTTATGACAATGCTGCGGCAGTTGCCAAGAAGGCTCACAAGGA
GGGAACTACACTTAAGGATGCTGCATTGAAACTCGGAGTACTCAATAGTG
AAGAATTTGATAATCTTGTGGTACCTGAGAAAATGATTGGCCCATCCGAC
TAACCAGCTTATGTGGGTTAAACTCCTGGGATTTGCTTTTGGCTTTTGTA
TCATTTTGCGGGATATCTGTTTCTGCGCCGTTTCTCTCCCTCAAGGCCTC
AACTGAATCACTTGATAGGGATCCAAATAGTGATTTTGCTTTTATTTTAA
AAAAACAAAGAAAGGGGCACCAAAAAAAAAACTATATTCTTTGAGGTTTT
CCCAGGAGGAGGCTTCATTGATATGTCATTTCACGTGGTTGACAAATAAC
CGATTGGTAAGCCAAACAAGGGGAAAACCTCCCTCATTTTTTTGGGCCGA
CATGGGAATAAAAAAATGGTTAAAACCAAAAAAAAATGAAAAAAAATTTT
AAAGGCTAAAGGGACCCTTAAAATGAACCCCCCCAAATTTTTTTTTAATT
GAAAAAAATTTTTTTCAAAAAAAACATTATTTTGGAAG
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