DY257022

Overview
NameDY257022
Unique NameDY257022
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length817
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257022 vs. ExPASy Swiss-Prot
Match: GLPF_STRCO (Probable glycerol uptake facilitator protein OS=Streptomyces coelicolor GN=glpF PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 5.222e-13
Identity = 67/227 (29.52%), Postives = 98/227 (43.17%), Query Frame = 3
Query:    9 SKSFTVGIQGIAWAFGVLIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQY-------EMLGG----------------GANMLSKGYSKG-------DGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIY------NKDQA-WDDHWIFWAGPFIGAALA 578
            SK+   G   IA+ +G  +    Y +  +SG H+NPAVT G+ + +    +    Y   Q LGA+ GA +V      Q+       E++GG                GA  +   +S G         L  EI+GTFVL+  + +      N   + + IL  L  GF V  + L+    TG  INP R LG  +++      NK  + W   WI   GP IG A+A
Sbjct:   33 SKARNAGWLAIAFGWGFAVMTAAYISGPLSGAHLNPAVTVGIAI-KDGDWSNTPTYFAGQLLGAMIGAVLVWVAYYGQFQAHLTDREIVGGPGAQDTTAKSVEAQEKGAGPVLGVFSTGPEIRHTVQNLATEIIGTFVLLLAILT---QGLNDEGNGLGILGALITGFVVVSIGLSLGGPTGYAINPVRDLGPRIVHALLPLPNKGGSDWSYAWIPVVGPLIGGAIA 255          
BLAST of DY257022 vs. ExPASy Swiss-Prot
Match: NIP22_MAIZE (Aquaporin NIP2-2 OS=Zea mays GN=NIP2-2 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.907e-13
Identity = 58/183 (31.69%), Postives = 87/183 (47.54%), Query Frame = 3
Query:   36 GIAWAFGVLIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVY-TVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFWAGPFIGAALAA 581
            G + A G+++  ++Y T  ISG H+NPAVT      R     +  FY   Q  GA+C A V+K        ++G      +        L  EIV TF +++ T   ATD++       V  LA L +G AV +  +   P++G  +NPAR+L  A+  N    +   WI++ GP IG    A
Sbjct:   86 GQSVAGGLIVTVMIYATGHISGAHMNPAVTLSFACFRHFPWIQVPFYWAAQFTGAMCAAFVLKAV-LHPIAVIG----TTTPSGPHWHALLIEIVVTFNMMFVTCAVATDSRA------VGELAGLAVGSAVCITSIFAGPVSGGSMNPARTLAPAVASN---VFTGLWIYFLGPVIGTLSGA 254          
BLAST of DY257022 vs. ExPASy Swiss-Prot
Match: SIP12_MAIZE (Aquaporin SIP1-2 OS=Zea mays GN=SIP1-2 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.163e-12
Identity = 55/208 (26.44%), Postives = 86/208 (41.35%), Query Frame = 3
Query:   30 IQGIAWAF-------GVLIFALVYCTAGISGGHINPAVTFGLFLA--RKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFWAGPFIGAALAALYHQIVIRAIPFKSK 626
            +QG+ +A         VL+F        + G   NP      + A     SL      +  Q  GA+ GA  +     +QY  + GG ++    ++   G GAE+V TFV+   V          +    PI+    I      + L+    TG  +NPA + G A + N+   W+  +++W  PFIGA LAA   + +    P K K
Sbjct:   40 LQGVHFALLVTVSLLSVLLFVFNILCDALGGASFNPTGVAAFYAAGVTSPSLFSIALRLPAQAAGAVGGALAISELMPAQYRHMLGGPSLKVDPHT---GAGAELVLTFVITLAVLLII-----VKGPRNPIIKTWMISICTLCLVLSGAAYTGPSMNPANAFGWAYVNNRHNTWEQFYVYWICPFIGAILAAWIFRAMFLTPPPKPK 239          
BLAST of DY257022 vs. ExPASy Swiss-Prot
Match: AQP9_HUMAN (Aquaporin-9 OS=Homo sapiens GN=AQP9 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.163e-12
Identity = 57/215 (26.51%), Postives = 90/215 (41.86%), Query Frame = 3
Query:   27 GIQGIAWAFGVLIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGG--------------ANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAW---------DDHWIFWAGPFIGAALAALYHQIVI 602
            G+  I   F + +   +Y   G+SGGHINPAV+  + L  ++   +  FY+  Q LGA  GAA V G          GG              A   +   S  +    ++V T +L+  VF+  D++          L P+ IG  + ++  +    +G  +NPAR L   L +     W         +  WI   GP +GA +  L + +VI
Sbjct:   56 GVITINVGFSMAVAMAIYVAGGVSGGHINPAVSLAMCLFGRMKWFKLPFYVGAQFLGAFVGAATVFGIYYDGLMSFAGGKLLIVGENATAHIFATYPAPYLSLANAFADQVVATMILLIIVFAIFDSRNLGAPRG---LEPIAIGLLIIVIASSLGLNSGCAMNPARDLSPRL-FTALAGWGFEVFRAGNNFWWIPVVGPLVGAVIGGLIYVLVI 266          
BLAST of DY257022 vs. ExPASy Swiss-Prot
Match: NIP31_MAIZE (Aquaporin NIP3-1 OS=Zea mays GN=NIP3-1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.519e-12
Identity = 56/192 (29.17%), Postives = 89/192 (46.35%), Query Frame = 3
Query:   36 GIAWAFGVLIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFS-ATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFWAGPFIGA-ALAALYHQIVIR 605
            G A   G+ +  ++  T  ISG H+NP++T      R     +   Y+ +Q L ++C A  +KG     +  L GG  +     S       E + +F L++ V + ATD +       V  LA + +G AV L  L   P TG  +NP R+LG A+       +   WI+   P +GA A A++Y  + +R
Sbjct:  108 GNAACAGLAVATVILSTGHISGAHLNPSLTIAFAALRHFPWLQVPAYVAVQALASVCAAFALKGV---FHPFLSGGVTVPDATVSTAQAFFTEFIISFNLLFVVTAVATDTRA------VGELAGIAVGAAVTLNILVAGPTTGGSMNPVRTLGPAVAAGN---YRQLWIYLLAPTLGALAGASVYKAVKLR 287          
BLAST of DY257022 vs. ExPASy Swiss-Prot
Match: NIP21_MAIZE (Aquaporin NIP2-1 OS=Zea mays GN=NIP2-1 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.984e-12
Identity = 57/183 (31.15%), Postives = 88/183 (48.09%), Query Frame = 3
Query:   36 GIAWAFGVLIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVY-TVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFWAGPFIGAALAA 581
            G + A G+++  ++Y    ISG H+NPAVT    + R     +  FY   Q  G+IC + V+K        +LG         +S    L  EI+ TF +++ T+  ATD +       V  LA L +G AV +  +    ++G  +NPAR+LG AL  N    +   WI++ GP +G    A
Sbjct:   81 GQSVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAVFRHFPWIQVPFYWAAQFTGSICASFVLKAV-LHPIAVLGTTTPTGPHWHS----LVIEIIVTFNMMFVTLAVATDTRA------VGELAGLAVGSAVCITSIFAGAVSGGSMNPARTLGPALASN---LYTGLWIYFLGPVLGTLSGA 249          
BLAST of DY257022 vs. ExPASy Swiss-Prot
Match: GLPF_ECOLI (Glycerol uptake facilitator protein OS=Escherichia coli (strain K12) GN=glpF PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.385e-12
Identity = 58/225 (25.78%), Postives = 98/225 (43.56%), Query Frame = 3
Query:   39 IAWAFGVLIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKG--------FQKSQY---------EMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHW---------------IFWAGPFIGAALAAL-YHQIVIRAIP 614
            + W  GV +   +Y TAG+SG H+NPAVT  L+L       + + +++ Q  GA C AA+V G        F+++ +         ++ G  +   +   +       E+V T +L+  + + TD            LAPL IG  + ++  +  P+TG  +NPAR  G  +      AW   W               +   GP +GA + A  Y +++ R +P
Sbjct:   46 VIWGLGVAM--AIYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGP---LAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVF-----AWLAGWGNVAFTGGRDIPYFLVPLFGPIVGAIVGAFAYRKLIGRHLP 260          
BLAST of DY257022 vs. ExPASy Swiss-Prot
Match: GLPF_ECOL6 (Glycerol uptake facilitator protein OS=Escherichia coli O6 GN=glpF PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.385e-12
Identity = 58/225 (25.78%), Postives = 98/225 (43.56%), Query Frame = 3
Query:   39 IAWAFGVLIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKG--------FQKSQY---------EMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHW---------------IFWAGPFIGAALAAL-YHQIVIRAIP 614
            + W  GV +   +Y TAG+SG H+NPAVT  L+L       + + +++ Q  GA C AA+V G        F+++ +         ++ G  +   +   +       E+V T +L+  + + TD            LAPL IG  + ++  +  P+TG  +NPAR  G  +      AW   W               +   GP +GA + A  Y +++ R +P
Sbjct:   46 VIWGLGVAM--AIYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGP---LAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVF-----AWLAGWGNVAFTGGRDIPYFLVPLFGPIVGAIVGAFAYRKLIGRHLP 260          
BLAST of DY257022 vs. ExPASy Swiss-Prot
Match: GLPF_ECO57 (Glycerol uptake facilitator protein OS=Escherichia coli O157:H7 GN=glpF PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.385e-12
Identity = 58/225 (25.78%), Postives = 98/225 (43.56%), Query Frame = 3
Query:   39 IAWAFGVLIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKG--------FQKSQY---------EMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHW---------------IFWAGPFIGAALAAL-YHQIVIRAIP 614
            + W  GV +   +Y TAG+SG H+NPAVT  L+L       + + +++ Q  GA C AA+V G        F+++ +         ++ G  +   +   +       E+V T +L+  + + TD            LAPL IG  + ++  +  P+TG  +NPAR  G  +      AW   W               +   GP +GA + A  Y +++ R +P
Sbjct:   46 VIWGLGVAM--AIYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGP---LAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVF-----AWLAGWGNVAFTGGRDIPYFLVPLFGPIVGAIVGAFAYRKLIGRHLP 260          
BLAST of DY257022 vs. ExPASy Swiss-Prot
Match: GLPF_PSEAE (Glycerol uptake facilitator protein OS=Pseudomonas aeruginosa GN=glpF PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 4.421e-12
Identity = 52/177 (29.38%), Postives = 81/177 (45.76%), Query Frame = 3
Query:   27 GIQGIAWAFGVLIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQY-------EMLGGGANMLS----------KGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALI 506
            G+  I+  +GV +   +Y +AG+SG H+NPAV+  L+L       +  FY+  Q  GA C AA+V     S +        ++ G  + L+             S G     E+V T +L+  + + TD            LAPL IG  + ++  A  P+TG  +NPAR  G  L+
Sbjct:   43 GLWEISIIWGVGVSMAIYLSAGVSGAHLNPAVSIALWLFAGFEGRKLPFYITAQVAGAFCAAALVYTLYSSLFIEFEQAQNIVRGSQDSLALASVFSTYPHPALSVGQAFLVEVVITAILMAVIMALTDDGNGLPRGP---LAPLLIGLLIAVIGSAMGPLTGFAMNPARDFGPKLM 216          
The following BLAST results are available for this feature:
BLAST of DY257022 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 201
Match NameE-valueIdentityDescription
GLPF_STRCO5.222e-1329.52Probable glycerol uptake facilitator protein OS=St... [more]
NIP22_MAIZE8.907e-1331.69Aquaporin NIP2-2 OS=Zea mays GN=NIP2-2 PE=2 SV=1[more]
SIP12_MAIZE1.163e-1226.44Aquaporin SIP1-2 OS=Zea mays GN=SIP1-2 PE=2 SV=1[more]
AQP9_HUMAN1.163e-1226.51Aquaporin-9 OS=Homo sapiens GN=AQP9 PE=1 SV=1[more]
NIP31_MAIZE1.519e-1229.17Aquaporin NIP3-1 OS=Zea mays GN=NIP3-1 PE=2 SV=1[more]
NIP21_MAIZE1.984e-1231.15Aquaporin NIP2-1 OS=Zea mays GN=NIP2-1 PE=2 SV=2[more]
GLPF_ECOLI3.385e-1225.78Glycerol uptake facilitator protein OS=Escherichia... [more]
GLPF_ECOL63.385e-1225.78Glycerol uptake facilitator protein OS=Escherichia... [more]
GLPF_ECO573.385e-1225.78Glycerol uptake facilitator protein OS=Escherichia... [more]
GLPF_PSEAE4.421e-1229.38Glycerol uptake facilitator protein OS=Pseudomonas... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA3CD10ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257022 ID=DY257022; Name=DY257022; organism=Citrus clementina; type=EST; length=817bp
AATCCAAAAGCAAATCTTTCACTGTGGGAATCCAGGGCATCGCTTGGGCT
TTTGGCGTTTTGATCTTCGCTCTAGTCTACTGCACTGCTGGCATTTCAGG
GGGTCACATTAACCCAGCGGTGACATTCGGGCTGTTCTTGGCCCGAAAGC
TGTCGCTTACCAGGGCAGTTTTTTACATGATAATGCAGTGTTTAGGGGCC
ATATGCGGTGCCGCCGTTGTAAAGGGCTTTCAGAAAAGCCAATATGAAAT
GCTAGGCGGCGGTGCCAACATGCTCAGCAAAGGCTACAGCAAGGGAGATG
GCCTTGGAGCCGAGATTGTTGGTACCTTTGTTCTTGTTTACACTGTCTTC
TCGGCCACTGATGCCAAGCGCAATGCCCGCGATTCTCATGTTCCTATATT
GGCACCCCTGCCCATAGGATTTGCTGTGTTTTTGGTGCACTTGGCAACAA
TTCCTATCACAGGAACAGGCATTAACCCAGCTAGGAGTCTTGGCGCAGCT
CTGATATACAACAAGGACCAAGCCTGGGATGATCATTGGATTTTCTGGGC
AGGACCATTCATTGGAGCAGCGCTTGCAGCTTTATATCATCAGATTGTGA
TCAGGGCCATCCCATTCAAGTCCAAATGATTAGTCATTAATTTCGATCCG
TTCAATTAATAGCCATGTATGGAGTTGAATTGCCCACTGTCACTGGGTTT
GCTTTTAATTATCTGCTGTATATGTACAACCCTTTGGTTGTTTGTGGCTC
TTGAATTGTGTATGACTATACATGTTCCAGGCCAATTCCTATTAAAAATA
AATTAATGTTTCTTGTC
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