DY257022

Overview
NameDY257022
Unique NameDY257022
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length817
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY257022 vs. ExPASy Swiss-Prot
Match: NIP61_ARATH (Aquaporin NIP6-1 OS=Arabidopsis thaliana GN=NIP6-1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.337e-11
Identity = 53/189 (28.04%), Postives = 87/189 (46.03%), Query Frame = 3 
Query:   36 GIAWAFGVLIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFS-ATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFWAGPFIGAALAALYHQIV 599
            G A + G+ +  ++  T  ISG H+NPAVT      +         Y+  Q + ++  A  +K   +     + GG  + + G S+   L  E + +F L++ V + ATD +       V  LA + +G  V L  L   P T   +NP R+LG A+  N  +A    W++   P +GA + A  + IV
Sbjct:  114 GCAASAGLAVMIVILSTGHISGAHLNPAVTIAFAALKHFPWKHVPVYIGAQVMASVSAAFALKAVFE---PTMSGGVTVPTVGLSQAFAL--EFIISFNLMFVVTAVATDTRA------VGELAGIAVGATVMLNILIAGPATSASMNPVRTLGPAIAANNYRA---IWVYLTAPILGALIGAGTYTIV 288
The following BLAST results are available for this feature:
BLAST of DY257022 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 201
Match NameE-valueIdentityDescription
NIP61_ARATH8.337e-1128.04Aquaporin NIP6-1 OS=Arabidopsis thaliana GN=NIP6-1... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA3CD10ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257022 ID=DY257022; Name=DY257022; organism=Citrus clementina; type=EST; length=817bp
AATCCAAAAGCAAATCTTTCACTGTGGGAATCCAGGGCATCGCTTGGGCT
TTTGGCGTTTTGATCTTCGCTCTAGTCTACTGCACTGCTGGCATTTCAGG
GGGTCACATTAACCCAGCGGTGACATTCGGGCTGTTCTTGGCCCGAAAGC
TGTCGCTTACCAGGGCAGTTTTTTACATGATAATGCAGTGTTTAGGGGCC
ATATGCGGTGCCGCCGTTGTAAAGGGCTTTCAGAAAAGCCAATATGAAAT
GCTAGGCGGCGGTGCCAACATGCTCAGCAAAGGCTACAGCAAGGGAGATG
GCCTTGGAGCCGAGATTGTTGGTACCTTTGTTCTTGTTTACACTGTCTTC
TCGGCCACTGATGCCAAGCGCAATGCCCGCGATTCTCATGTTCCTATATT
GGCACCCCTGCCCATAGGATTTGCTGTGTTTTTGGTGCACTTGGCAACAA
TTCCTATCACAGGAACAGGCATTAACCCAGCTAGGAGTCTTGGCGCAGCT
CTGATATACAACAAGGACCAAGCCTGGGATGATCATTGGATTTTCTGGGC
AGGACCATTCATTGGAGCAGCGCTTGCAGCTTTATATCATCAGATTGTGA
TCAGGGCCATCCCATTCAAGTCCAAATGATTAGTCATTAATTTCGATCCG
TTCAATTAATAGCCATGTATGGAGTTGAATTGCCCACTGTCACTGGGTTT
GCTTTTAATTATCTGCTGTATATGTACAACCCTTTGGTTGTTTGTGGCTC
TTGAATTGTGTATGACTATACATGTTCCAGGCCAATTCCTATTAAAAATA
AATTAATGTTTCTTGTC
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