DY257045

Overview
NameDY257045
Unique NameDY257045
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1296
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257045 vs. ExPASy Swiss-Prot
Match: PGLR_SOLLC (Polygalacturonase-2 OS=Solanum lycopersicum GN=PG2 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.201e-15
Identity = 63/264 (23.86%), Postives = 123/264 (46.59%), Query Frame = 1
Query:  193 VITGDNGTIDGQGEPWW-RKFRVGELKYTR--PYLIEIMHSQNIQISNLTLINSPSWNVHPVYSSSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDQYGIAYGMPTKQLIIRRLTCISPFSAVIALGSEMSGG----IQDVRAEDITAIDSESGVRIKTAVGRGGFVKDIYVRRMTMKTMKWAFWITGSYGSHPDKYYDPHALPEIQNINYRDMVAKNVXMAARLKXLAGGSF--TGICLSNVTI 957
            ++ G  GTI+G G+ WW    ++ +    R  P  +   + +N++++NL   N+   ++     ++V+   + I A   SPNTDG++  +    +I D  I +GDDC+++ SG           ++ +    +TC       I++GS  SG     + +V   +   I +E+GVRIKT  G  G   +I    + M+ +K+   I  +Y    +      +  +++N+ Y ++   +    A +K     +F   GI + N+ +
Sbjct:  166 LVVGGGGTINGNGQVWWPSSCKINKSLPCRDAPTALTFWNCKNLKVNNLKSKNAQQIHIKFESCTNVVASNLMINASAKSPNTDGVHVSNTQYIQISDTIIGTGDDCISIVSG-----------SQNVQATNITCGPGHG--ISIGSLGSGNSEAYVSNVTVNEAKIIGAENGVRIKTWQGGSGQASNIKFLNVEMQDVKYPIIIDQNYCDRVEPCIQQFSAVQVKNVVYENIKGTSATKVA-IKFDCSTNFPCEGIIMENINL 415          
BLAST of DY257045 vs. ExPASy Swiss-Prot
Match: PGLR1_ARATH (Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana GN=PGA3 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 6.404e-15
Identity = 59/211 (27.96%), Postives = 108/211 (51.18%), Query Frame = 1
Query:  187 DVVITGDNGTIDGQGEPWWRKFRVGELKYTR--PYLIEIMHSQNIQISNLTLINSPSWNVHPVYSSSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDQYGIAYGMPTKQLIIRRLTCISPFS-AVIALGS-EMSGGIQDVRAEDITAIDSESGVRIKTAVGRG-GFVKDIYVRRMTMKTMKWAFWITGSYGS 804
            ++V+TG  GT  G+GE  W+    G+       P  ++  + +N++I+ ++ +N+ ++++  V + +V +Q I + AP  SPNTDGI+  +  N  I D  I +GDDCV+V           G  +  + + R+ C      +V +LG  +    +  +   + T I++++G+RIKT  G       DI    + M+++K    I  +YGS
Sbjct:  137 NLVLTG-TGTFHGKGEAVWKADGCGKKVQCNLPPTSLKFRNMKNVEINGISSVNAKAFHMFLVKTENVNIQNIKLTAPAESPNTDGIHLSNADNVSILDSTIATGDDCVSV-----------GRGSNNVTVERVICGPGHGLSVGSLGKYKNEEDVSGIHVNNCTMIETDNGLRIKTWGGSDPSKAVDIKFENIIMQSVKNPIIIDQNYGS 335          
BLAST of DY257045 vs. ExPASy Swiss-Prot
Match: PGLR2_PECCC (Endo-polygalacturonase OS=Pectobacterium carotovorum subsp. carotovorum GN=pehA PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.433e-14
Identity = 77/261 (29.50%), Postives = 118/261 (45.21%), Query Frame = 1
Query:  136 DTEGGRYSSLIFGTNLTDVVITGDNGTIDGQGE--------PWWR---KFRVGELKYTRPYLIEIMHSQNIQISNLTLINSPSWNVHPVYSSS--VIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDQYGIAYGMPTKQLIIRRLTCISPFSAVIALGSEMSGGIQDVRAEDITAIDSESGVRIKTAVGRGGFVKDIYVRRMTMKTMKWAFWITGSYGSHPDKYYDPHALPEIQNINYRDMVAK 879
            D  G    + I   + T+  I G  GTIDGQG          WW      +V +LK   P LI+I  S+N  + N++LINSP  N H V+S          TI  P T+ NTDGI+P S  N  I    I +GDD VA+K        AY    +   I  L         +++GSE + G+ +V  +D+    + +G+RIK+     G V  +    + MK +     I   Y     +  +   +P+  +I ++D+ ++
Sbjct:  119 DKNGKGCDAFITAVSTTNSGIYGP-GTIDGQGGVKLQDKKVSWWELAADAKVKKLKQNTPRLIQINKSKNFTLYNVSLINSP--NFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSKNITIAYSNIATGDDNVAIK--------AYKGRAETRNISILHNDFGTGHGMSIGSE-TMGVYNVTVDDLKMNGTTNGLRIKSDKSAAGVVNGVRYSNVVMKNVAKPIVIDTVY-----EKKEGSNVPDWSDITFKDVTSE 362          
BLAST of DY257045 vs. ExPASy Swiss-Prot
Match: PGLR5_ARATH (Probable polygalacturonase At1g80170 OS=Arabidopsis thaliana GN=At1g80170 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 5.421e-14
Identity = 60/245 (24.49%), Postives = 106/245 (43.27%), Query Frame = 1
Query:  142 EGGRYSSLIFGTNLTDVVITGDNGTIDGQGEPWWR---KFRVGELKYTRPYLIEIMHSQNIQISNLTLINSPSWNVHPVYSSSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDQYGIAYGMPTKQLIIRRLTCISPFSAVI-ALGSEMS-GGIQDVRAEDITAIDSESGVRIKTAVGRGGFVKDIYVRRMTMKTMKWAFWITGSYGSHPDKYYDPHALPEIQNINY 861
            EG      ++   L+ + + G  GT++G G+ WW    K          P  +     +N+++ NL +I+S   ++       V + G+ ++AP TSPNTDGI+        I++  + +GDDC+++              + Q+ I  + C       I +LG   S   ++D+  +     D+ +GVRIKT  G  G V  I  R + M  +     I   Y        +  +   I+NI++
Sbjct:  129 EGLNRRKWLYFHGLSRLTVEG-GGTVNGMGQEWWERSCKHNHSNPCRGAPTALTFHKCKNMRVENLNVIDSQQMHIALTSCRRVTISGLKVIAPATSPNTDGIHISVSRGIVIDNTTVSTGDDCISIVKN-----------STQISISNIICGPGHGISIGSLGKSKSWEEVRDITVDTAIISDTANGVRIKTWQGGSGLVSKIIFRNIKMNNVSNPIIIDQYYCDSRKPCANQTSAISIENISF 361          
BLAST of DY257045 vs. ExPASy Swiss-Prot
Match: QRT2_ARATH (Polygalacturonase QRT2 OS=Arabidopsis thaliana GN=QRT2 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 1.208e-13
Identity = 59/236 (25.00%), Postives = 107/236 (45.34%), Query Frame = 1
Query:  178 NLTDVVITGDNGTIDGQGEPWWRKFRVGELKYT---RPYLIEIMHSQNIQISNLTLINSPSWNVHPVYSSSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDQYGIAYGMPTKQLIIRRLTCISPFSAVI-ALGSEMSGG-IQDVRAEDITAIDSESGVRIKTAVGRGGFVKDIYVRRMTMKTMKWAFWITGSYGSHPDKYYDPHALPEIQNINYRDM 870
            N+ ++ + G  G IDG G  WW K      +      P  +  +   N+++SN+ L N+   ++      +V    + + +P  SPNTDGI+     N  I+D  + +GDDC+++ SG           ++ +    +TC       I +LG + S   + +V     T I + +GVRIKT  G  G  K+I  + + MK +     I   Y    +   +  +  ++ N+ Y+++
Sbjct:  157 NVNNLRVEG-GGRIDGNGHIWWPKSCKINPQLPCLGAPTAVTFVECNNLRVSNIRLENAQQMHLTFQDCKNVKALNLMVTSPADSPNTDGIHVSGTQNILIQDSIVRTGDDCISIVSG-----------SENVRATGITCGPGHGISIGSLGEDNSEAYVSNVVVNKATLIGTTNGVRIKTWQGGHGMAKNIIFQDIIMKNVTNPIIINQDYCDRVEACPEQKSAVQVSNVLYKNI 380          
BLAST of DY257045 vs. ExPASy Swiss-Prot
Match: PGLR_ACTDE (Polygalacturonase OS=Actinidia deliciosa PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.744e-12
Identity = 57/229 (24.89%), Postives = 104/229 (45.41%), Query Frame = 1
Query:  211 GTIDGQGEPWWR---KFRVGELKYTRPYLIEIMHSQNIQISNLTLINSPSWNVHPVYSSSVIVQG--ITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDQYGIAYGMPTKQLIIRRLTCISPFSAVIALGSEMSGG----IQDVRAEDITAIDSESGVRIKTAVGRGGFVKDIYVRRMTMKTMKWAFWITGSYGSHPDKYYDPHALPEIQNINYRDM 870
            GTI+G G+ WW+   K          P  +    S+++ + NL + N+    +H  + + V VQ   + + AP  SPNTDGI+     N  I  C I +GDDC+++ +G           ++++ +  +TC       I++GS   G     + DV         + +GVRIKT  G  G   +I  + + M  ++    I  +Y        +  +  +++N+ Y+++
Sbjct:  185 GTINGNGKIWWQNSCKTNKALPCKDAPTALTFYKSKHVIVKNLKIENAQQ--IHVSFDNCVNVQASNLMVTAPENSPNTDGIHVTGTQNIHISSCVIGTGDDCISIVNG-----------SRKVRVNDITCGPGHG--ISIGSLGYGNSEAHVSDVVVNGAKLCGTTNGVRIKTWQGGSGSASNIKFQNVEMHNVENPIIIDQNYCDQDKPCQEQSSAVQVKNVVYQNI 398          
BLAST of DY257045 vs. ExPASy Swiss-Prot
Match: PGLR_PRUPE (Polygalacturonase OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.975e-12
Identity = 71/248 (28.63%), Postives = 115/248 (46.37%), Query Frame = 1
Query:  148 GRYSSLIFGTNLTDVVITGDNGTIDGQGEPWWR-KFRVGELKYTRPYLIEIMHSQNIQISNLTLINSPSWNVHPVYSSSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDQYGIAYGMPTKQLIIRRLTCISPFSAVI-ALGSEM-SGGIQDVRAEDITAIDSESGVRIKTAVGR--GGFVKDIYVRRMTMKTMKWAFWITGSYGSHPDKYYDPHALP--EIQNINYRDM 870
            G  ++ IF  ++  V I+G  G +DGQG   W  K   GE   +    +    S NI +S L  +NS  +++      +V +QG+ +     SPNTDGI+    +   I +  I +GDDCV++  G           T  L I  + C       I +LG E    G+Q+V  + +T   +++G+RIK + GR   GF ++I  +  TM  ++    I   Y   PD    P  +   +I ++ Y D+
Sbjct:  104 GNAANWIFFHHVNGVTISG--GILDGQGTALWACKACHGESCPSGATTLGFSDSNNIVVSGLASLNSQMFHIVINDFQNVQMQGVRVSRSGNSPNTDGIHVQMSSGVTILNSKIATGDDCVSIGPG-----------TSNLWIEGVACGPGHGISIGSLGKEQEEAGVQNVTVKTVTFSGTQNGLRIK-SWGRPSTGFARNILFQHATMVNVENPIVIDQHY--CPDNKGCPGQVSGVQISDVTYEDI 335          
BLAST of DY257045 vs. ExPASy Swiss-Prot
Match: PGLR_PERAE (Polygalacturonase OS=Persea americana PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.975e-12
Identity = 63/277 (22.74%), Postives = 122/277 (44.04%), Query Frame = 1
Query:  178 NLTDVVITGDNGTIDGQGEPWWR---KFRVGELKYTRPYLIEIMHSQNIQISNLTLINSPSWNVHPVYSSSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDQYGIAYGMPTKQLIIRRLTCISPFSAVI-ALGSEMS-GGIQDVRAEDITAIDSESGVRIKTAVGRGGFVKDIYVRRMTMKTMKWAFWITGSYGSHPDKYYDPHALPEIQNINYRDMVAKNV-XMAARLKXLAGGSFTGICLSNVTIDLTNKPKKTSL 990
            +++++ + G  GT +G GE WW    K +      + P  +     +N+ +S+L++ +S   ++       VI   + + AP  SPNTDGI+        + +  I +GDDC++++SG           +K +I   +TC       I +LG   S   +  V  +     D+ +G+RIKT  G  G  K+I  + + M  +     I   Y    D   +  +  ++ N+ Y ++   +   +A +          G  + N+ + + N  K+T++
Sbjct:  170 DISNLTLEG-GGTSNGNGETWWDSSCKRKKSLPCKSAPTALTFRSCKNLIVSDLSIKDSQKMHLSFDKCQDVIASNLMVTAPEHSPNTDGIHITGTQRIHVMNSVIGTGDDCISIESG-----------SKMVIATNITCGPGHGISIGSLGDRNSEAHVSGVLVDGGNLFDTTNGLRIKTWQGGSGSAKNIKFQNIVMHNVTNPIIIDQYYCDSKDPCPEQESAVKVSNVAYMNIRGTSASEVAVKFDCSKSSPCQGYIVGNINL-VGNGGKETTM 433          
BLAST of DY257045 vs. ExPASy Swiss-Prot
Match: PGLR4_ARATH (Polygalacturonase At1g48100 OS=Arabidopsis thaliana GN=At1g48100 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 5.074e-12
Identity = 66/284 (23.24%), Postives = 125/284 (44.01%), Query Frame = 1
Query:   58 DAVLLASQDEKEWPVIEPLPSYGRGRDTEGGRYSSLIFGTNLTDVVITGDNGTIDGQGEPWW----RKFRVGELKYTR-----PYLIEIMHSQNIQISNLTLINSPSWNVHPVYSSSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDQYGIAYGMPTKQLIIRRLTCISPFSAVIALGS----EMSGGIQDVRAEDITAIDSESGVRIKTAVGRGGFVKDIYVRRMTMKTMKWAFWITGSYGSHPDKYYDPHALPEIQNINYRDM 870
            D VL+     +EWP              +  +   L+F   L     +G  GT++G G+ WW    +  R  +   +      P +I    S NI++  L + NSP +++       V++  I I +P  SPNTDGI+  +  +  I +  + +GDDC+++ +G              + I+ +TC  P S  I++GS         + ++   +    DS++G+R+KT  G  G V ++    + M+ +     +   Y    D   +  A+ ++ ++ YR++
Sbjct:  142 DGVLMPPDGPEEWP-------------EKDNKNQWLVF-YRLDGFTFSG-KGTVEGNGQKWWDLPCKPHRGPDGSSSSGPCASPTMIRFFMSNNIEVKGLRIQNSPQFHMKFDGCQGVLINEIQISSPKLSPNTDGIHLGNTRSVGIYNSVVSNGDDCISIGTG-----------CSDVDIQGVTC-GP-SHGISIGSLGVHNSQACVSNITVRNTVIRDSDNGLRVKTWQGGTGSVSNLLFENIQMENVLNCIIVDQYYCQSKDCRNETSAV-KVFDVEYRNI 396          
BLAST of DY257045 vs. ExPASy Swiss-Prot
Match: PGLR_MALDO (Polygalacturonase OS=Malus domestica PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.610e-11
Identity = 63/247 (25.51%), Postives = 114/247 (46.15%), Query Frame = 1
Query:  163 LIFGTNLTDVVITGDNGTIDGQGEPWWR---KFRVGELKYT-RPYLIEIMHSQNIQISNLTLINSPSWNVHPVYSSSVIVQG--ITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDQYGIAYGMPTKQLIIRRLTCISPFSAVIALGSEMSGGIQD----VRAEDITAIDSESGVRIKTAVGRGGFVKDIYVRRMTMKTMKWAFWITGSYGSHPDK-YYDPHALPEIQNINYRDM 870
            LIF  N+ ++++ G  GTI+G G  WW+   K +      T  P  +      N+ + NL + ++    +H ++ + + VQ   +T+ AP  SPNTDGI+  +  N  I    I +GDDC+++ SG           ++++    +TC       I++GS    G +D    V         + +G+RIKT  G  G   +I  + + M  +     I  +Y  H  K      +  +++N+ Y+++
Sbjct:  179 LIFD-NVQNLLVVGP-GTINGNGNIWWKNSCKIKPQPPCGTYAPTAVTFNRCNNLVVKNLNIQDAQQ--IHVIFQNCINVQASCLTVTAPEDSPNTDGIHVTNTQNITISSSVIGTGDDCISIVSG-----------SQRVQATDITCGPGHG--ISIGSLGEDGSEDHVSGVFVNGAKLSGTSNGLRIKTWKGGSGSATNIVFQNVQMNDVTNPIIIDQNYCDHKTKDCKQQKSAVQVKNVLYQNI 408          
The following BLAST results are available for this feature:
BLAST of DY257045 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
PGLR_SOLLC2.201e-1523.86Polygalacturonase-2 OS=Solanum lycopersicum GN=PG2... [more]
PGLR1_ARATH6.404e-1527.96Exopolygalacturonase clone GBGE184 OS=Arabidopsis ... [more]
PGLR2_PECCC2.433e-1429.50Endo-polygalacturonase OS=Pectobacterium carotovor... [more]
PGLR5_ARATH5.421e-1424.49Probable polygalacturonase At1g80170 OS=Arabidopsi... [more]
QRT2_ARATH1.208e-1325.00Polygalacturonase QRT2 OS=Arabidopsis thaliana GN=... [more]
PGLR_ACTDE1.744e-1224.89Polygalacturonase OS=Actinidia deliciosa PE=2 SV=1[more]
PGLR_PRUPE2.975e-1228.63Polygalacturonase OS=Prunus persica PE=2 SV=1[more]
PGLR_PERAE2.975e-1222.74Polygalacturonase OS=Persea americana PE=2 SV=1[more]
PGLR4_ARATH5.074e-1223.24Polygalacturonase At1g48100 OS=Arabidopsis thalian... [more]
PGLR_MALDO5.610e-1125.51Polygalacturonase OS=Malus domestica PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAA3CH04ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257045 ID=DY257045; Name=DY257045; organism=Citrus clementina; type=EST; length=1296bp
CGGTGGCTGACTGGAAGCTTCTTTCTCACCAGCCATTTCACTTTGTTTCT
TCACAAGGATGCTGTTCTTCTTGCTTCCCAGGATGAGAAAGAATGGCCTG
TGATCGAGCCTCTGCCATCCTACGGTAGAGGAAGGGACACAGAAGGTGGA
AGGTATAGCAGTCTTATTTTTGGAACCAACCTCACTGATGTTGTCATAAC
AGGGGACAATGGAACTATTGATGGTCAGGGTGAGCCCTGGTGGCGAAAAT
TTCGTGTGGGAGAGCTAAAGTATACCCGTCCATACCTTATTGAAATCATG
CACTCACAGAATATTCAAATATCCAACCTCACATTGATCAATTCCCCATC
CTGGAATGTTCATCCTGTTTATAGCAGTAGTGTCATAGTTCAAGGCATAA
CGATCCTAGCGCCGGTGACATCTCCAAACACTGATGGTATTAATCCTGAT
TCTTGCACAAACACCAGAATAGAGGACTGCTACATTGTATCAGGGGATGA
CTGTGTAGCAGTTAAAAGTGGCTGGGATCAGTATGGTATTGCTTACGGGA
TGCCAACAAAGCAGCTTATTATCAGACGCCTAACGTGCATTTCTCCATTC
AGTGCAGTGATTGCACTGGGAAGTGAGATGTCCGGTGGGATTCAGGACGT
ACGGGCAGAAGATATCACAGCCATTGATTCTGAATCAGGTGTCAGGATCA
AAACTGCTGTTGGAAGAGGAGGTTTTGTGAAGGACATATATGTGAGAAGA
ATGACAATGAAAACCATGAAATGGGCATTTTGGATTACAGGCAGTTATGG
TTCTCATCCTGACAAATACTATGATCCGCATGCACTTCCTGAGATTCAGA
ATATCAATTATCGTGACATGGTTGCTAAGAATGTAANCATGGCAGCTAGA
TTGAAANGATTGGCTGGGGGATCCTTTACTGGAATTTGCCTATCAAATGT
GACCATTGACCTAACCAACAAGCCTAAGAAAACTTCATTGGAACTGCCCT
GATATTACCGGGAATTTCAAGTGGTGTGACTCCCCAACCCTTGGTGAATG
TTGCCCAAAATCCCAAACCGGCCCCAAACCAACGAAATGTAATTTTCCCT
GACAACCAAAATTCCCCGTTGAAGAACATGGGGAATTTCAATGGTCCTCC
CTACCAAACCAAATCCTTTTTAACCCCAAATTTGTTTACTTTTGTTTTTA
AAGGGGTTTTTTCAATCCCCCCTATTTTTGCCGGGGAAATTTTTATAAAA
AAATCCCCCCCAAAAACTCCATTATATTTTTATACACCTTTTTTTT
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