DY257045

Overview
NameDY257045
Unique NameDY257045
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1296
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257045 vs. ExPASy Swiss-Prot
Match: PGLR_YEAST (Polygalacturonase OS=Saccharomyces cerevisiae GN=PGU1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.569e-11
Identity = 65/273 (23.81%), Postives = 116/273 (42.49%), Query Frame = 1
Query:  154 YSSLIFGTNLTDVVITGDNG-TIDGQGEPWWRKFRVGELKYTRPYLIEIMHSQNIQISNLTLINSPSWNVHPVYS----SSVIVQGITILA----PVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSG----------WDQYGIAYGMPTKQLIIRRLTCISPFSAVIALGSEMSGGIQDVRAEDITAIDSESGVRIKTAVGRGGFVKDI-YVRRMTMKTMKWAFWITGSYGSHPDKYYDPHALPEIQNINYRDMVAKNVXMAARLKXL 912
            +S  +   + + + + G +G TIDGQG  WW    +G+    +P  +++  +   +++ L + N+P    H V+S    S + +  ITI           NTDG +  S +N  I+ C + + DDC+AV SG          ++ +GI+ G                     ++G      +    AE+   I+S++G+RIKT  G  G V ++ ++         +   I G Y +          +P I N+  +D+       A R+K L
Sbjct:   83 WSGPLISISGSKISVVGASGHTIDGQGAKWWDG--LGDSGKVKPKFVKLALTGTSKVTGLNIKNAP----HQVFSINKCSDLTISDITIDIRDGDSAGGHNTDGFDVGSSSNVLIQGCTVYNQDDCIAVNSGSTIKFMNNYCYNGHGISVG---------------------SVGGRSDNTVNGFWAENNHVINSDNGLRIKTVEGATGTVTNVNFISNKISGIKSYGIVIEGDYLNSKTTGTATGGVP-ISNLVMKDITGSVNSTAKRVKIL 327          
BLAST of DY257045 vs. ExPASy Swiss-Prot
Match: PGLR1_MAIZE (Exopolygalacturonase OS=Zea mays GN=PG1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.569e-11
Identity = 70/281 (24.91%), Postives = 122/281 (43.42%), Query Frame = 1
Query:  187 DVVITGDNGTIDGQGEPWWRKFRVGELKYT---RPYLIEIMHSQNIQISNLTLINSPSWNVHPVYSSSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDQYGIAYGMPTKQLIIRRLTCISPFSAVIALGS----EMSGGIQDVRAEDITAIDSESGVRIKTAVGRGGF--VKDIYVRRMTMKTMKWAFWITGSYGSHPDKYYDPHALPEIQNINYRDMVAKNV------XMAARLKXLAGGSFTGICLSNVTIDLTNKPKKT 984
            ++VITG  G +DGQG   W K    + KY     P  + +    N ++S +TL+NS  ++++      ++++ +T+ AP  SPNTDGI+    +   I +  I  GDDC+++  G           T ++ I  +TC       I++GS    +    + D+  +D T   +  GVRIK          V  I+   + M+      +I   Y   P+K    +       +  +D+  KN+        A  L   A    TG+ + +V ++ +    KT
Sbjct:  129 NLVITG-KGNLDGQGPAVWSKNSCTK-KYDCKILPNSLVMDFVNNGEVSGVTLLNSKFFHMNMYRCKDMLIKDVTVTAPGDSPNTDGIHMGDSSGITITNTVIGVGDDCISIGPG-----------TSKVNITGVTCGPGHG--ISIGSLGRYKDEKDVTDINVKDCTLKKTMFGVRIKAYEDAASVLTVSKIHYENIKMEDSANPIFIDMKY--CPNKLCTANG---ASKVTVKDVTFKNITGTSSTPEAVSLLCTAKVPCTGVTMDDVNVEYSGTNNKT 389          
The following BLAST results are available for this feature:
BLAST of DY257045 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
PGLR_YEAST9.569e-1123.81Polygalacturonase OS=Saccharomyces cerevisiae GN=P... [more]
PGLR1_MAIZE9.569e-1124.91Exopolygalacturonase OS=Zea mays GN=PG1 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAA3CH04ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257045 ID=DY257045; Name=DY257045; organism=Citrus clementina; type=EST; length=1296bp
CGGTGGCTGACTGGAAGCTTCTTTCTCACCAGCCATTTCACTTTGTTTCT
TCACAAGGATGCTGTTCTTCTTGCTTCCCAGGATGAGAAAGAATGGCCTG
TGATCGAGCCTCTGCCATCCTACGGTAGAGGAAGGGACACAGAAGGTGGA
AGGTATAGCAGTCTTATTTTTGGAACCAACCTCACTGATGTTGTCATAAC
AGGGGACAATGGAACTATTGATGGTCAGGGTGAGCCCTGGTGGCGAAAAT
TTCGTGTGGGAGAGCTAAAGTATACCCGTCCATACCTTATTGAAATCATG
CACTCACAGAATATTCAAATATCCAACCTCACATTGATCAATTCCCCATC
CTGGAATGTTCATCCTGTTTATAGCAGTAGTGTCATAGTTCAAGGCATAA
CGATCCTAGCGCCGGTGACATCTCCAAACACTGATGGTATTAATCCTGAT
TCTTGCACAAACACCAGAATAGAGGACTGCTACATTGTATCAGGGGATGA
CTGTGTAGCAGTTAAAAGTGGCTGGGATCAGTATGGTATTGCTTACGGGA
TGCCAACAAAGCAGCTTATTATCAGACGCCTAACGTGCATTTCTCCATTC
AGTGCAGTGATTGCACTGGGAAGTGAGATGTCCGGTGGGATTCAGGACGT
ACGGGCAGAAGATATCACAGCCATTGATTCTGAATCAGGTGTCAGGATCA
AAACTGCTGTTGGAAGAGGAGGTTTTGTGAAGGACATATATGTGAGAAGA
ATGACAATGAAAACCATGAAATGGGCATTTTGGATTACAGGCAGTTATGG
TTCTCATCCTGACAAATACTATGATCCGCATGCACTTCCTGAGATTCAGA
ATATCAATTATCGTGACATGGTTGCTAAGAATGTAANCATGGCAGCTAGA
TTGAAANGATTGGCTGGGGGATCCTTTACTGGAATTTGCCTATCAAATGT
GACCATTGACCTAACCAACAAGCCTAAGAAAACTTCATTGGAACTGCCCT
GATATTACCGGGAATTTCAAGTGGTGTGACTCCCCAACCCTTGGTGAATG
TTGCCCAAAATCCCAAACCGGCCCCAAACCAACGAAATGTAATTTTCCCT
GACAACCAAAATTCCCCGTTGAAGAACATGGGGAATTTCAATGGTCCTCC
CTACCAAACCAAATCCTTTTTAACCCCAAATTTGTTTACTTTTGTTTTTA
AAGGGGTTTTTTCAATCCCCCCTATTTTTGCCGGGGAAATTTTTATAAAA
AAATCCCCCCCAAAAACTCCATTATATTTTTATACACCTTTTTTTT
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