DY257763

Overview
NameDY257763
Unique NameDY257763
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length748
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257763 vs. ExPASy Swiss-Prot
Match: UBC1_COLGL (Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletotrichum gloeosporioides GN=UBC1 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.676e-23
Identity = 56/144 (38.89%), Postives = 86/144 (59.72%), Query Frame = 3
Query:    9 KEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAM 440
            KE  ++ R+  +      V +D  +F W A I GP  +PY GGVF LA   P  YP +PP+V F T+I+HPN++   G ICLDIL++ WSPA T+  V  +I +++  P PD PL  +  ++ ++   R +++ AR +TR  A+
Sbjct:    8 KELTDLGRDPPSSCSAGPVGED--LFHWQATIMGPGDSPYSGGVFFLAIHFPTDYPFKPPKVNFTTRIYHPNIN-SNGSICLDILRDQWSPALTISKVLLSICSMLTDPNPDEPLVPEIAHVYKTDRAR-YEATAREWTRKYAI 147          
BLAST of DY257763 vs. ExPASy Swiss-Prot
Match: UBC1_ARATH (Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis thaliana GN=UBC1 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.676e-23
Identity = 49/124 (39.52%), Postives = 80/124 (64.52%), Query Frame = 3
Query:    3 LFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNL 374
            L +++K +Q++  A   I     D+NI  W A+I GP  TP++GG F+L+    E YP +PP VRF++++FHPN+ +  G ICLDIL+N WSP + + ++  +I +L+  P P+SP N ++  +
Sbjct:    9 LMRDFKRLQQDPPAG--ISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNI-YADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARM 129          
BLAST of DY257763 vs. ExPASy Swiss-Prot
Match: UBE2A_MOUSE (Ubiquitin-conjugating enzyme E2 A OS=Mus musculus GN=Ube2a PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.801e-23
Identity = 51/124 (41.13%), Postives = 77/124 (62.10%), Query Frame = 3
Query:    3 LFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNL 374
            L +++K +Q +  A   +     ++NI  W A+I GP  TP+E G F+L     E+YP +PP VRF++K+FHPNV +  G ICLDIL+N WSP + + S+  +I +L+  P P+SP N  +  L
Sbjct:    9 LMRDFKRLQEDPPAG--VSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNV-YADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQL 129          
BLAST of DY257763 vs. ExPASy Swiss-Prot
Match: UBE2A_HUMAN (Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens GN=UBE2A PE=2 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 4.801e-23
Identity = 51/124 (41.13%), Postives = 77/124 (62.10%), Query Frame = 3
Query:    3 LFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNL 374
            L +++K +Q +  A   +     ++NI  W A+I GP  TP+E G F+L     E+YP +PP VRF++K+FHPNV +  G ICLDIL+N WSP + + S+  +I +L+  P P+SP N  +  L
Sbjct:    9 LMRDFKRLQEDPPAG--VSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNV-YADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQL 129          
BLAST of DY257763 vs. ExPASy Swiss-Prot
Match: UBC2_MEDSA (Ubiquitin-conjugating enzyme E2 2 OS=Medicago sativa GN=UBC2 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.801e-23
Identity = 49/124 (39.52%), Postives = 79/124 (63.71%), Query Frame = 3
Query:    3 LFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNL 374
            L +++K +Q +  A   I     D+NI  W A+I GP  TP++GG F+L+    E YP +PP VRF++++FHPN+ +  G ICLDIL+N WSP + + ++  +I +L+  P P+SP N ++  +
Sbjct:    9 LMRDFKRLQHDPPAG--ISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNI-YADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARM 129          
BLAST of DY257763 vs. ExPASy Swiss-Prot
Match: UBC1_SCHPO (Ubiquitin-conjugating enzyme E2 1 OS=Schizosaccharomyces pombe GN=ubc1 PE=2 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 4.801e-23
Identity = 50/114 (43.86%), Postives = 74/114 (64.91%), Query Frame = 3
Query:    9 KEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSP 350
            KE  +VQ++K A   +  + DD +  K   + +GP  TPYEGG F +   +P  YP +PP++ F TKI+HPNV  +TG ICLDILK+ WSP +T++S   ++ +L+  PEP +P
Sbjct:   11 KELADVQQDKQAGIQVWTINDDISHLK--GMFRGPEGTPYEGGYFVVDIEIPIDYPFRPPKMNFDTKIYHPNVSSQTGAICLDILKDQWSPVYTMKSALISLQSLLCTPEPSNP 122          
BLAST of DY257763 vs. ExPASy Swiss-Prot
Match: UBC2_YEAST (Ubiquitin-conjugating enzyme E2 2 OS=Saccharomyces cerevisiae GN=RAD6 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.271e-23
Identity = 50/126 (39.68%), Postives = 78/126 (61.90%), Query Frame = 3
Query:    3 LFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLR 380
            L +++K ++ +  A P +       N+  W A+I GP+ TPYE G F+L     E+YP +PP V+FL+++FHPNV +  GEICLDIL+N W+P + + S+  +I +L   P P SP N ++  L +
Sbjct:    9 LMRDFKRMKED--APPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNV-YANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFK 131          
BLAST of DY257763 vs. ExPASy Swiss-Prot
Match: UBC2_DEBHA (Ubiquitin-conjugating enzyme E2 2 OS=Debaryomyces hansenii GN=UBC2 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.271e-23
Identity = 49/126 (38.89%), Postives = 81/126 (64.29%), Query Frame = 3
Query:    3 LFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLR 380
            L +++K +Q++  +      + D  N+  W A+I GP+ TP+E G F+L     EQYP +PP V+F++++FHPNV + +GE+CLDIL+N WSP + + S+  +I +L+  P   SP N ++ NL +
Sbjct:    9 LMRDFKRMQQDAPSGVSASPLPD--NVMSWNAVIIGPADTPFEDGTFRLILQFDEQYPNKPPSVKFISEMFHPNV-YASGELCLDILQNRWSPTYDVSSILTSIQSLLNDPNISSPANVEAANLYK 131          
BLAST of DY257763 vs. ExPASy Swiss-Prot
Match: UBC2_ASHGO (Ubiquitin-conjugating enzyme E2 2 OS=Ashbya gossypii GN=UBC2 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.271e-23
Identity = 50/126 (39.68%), Postives = 78/126 (61.90%), Query Frame = 3
Query:    3 LFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLR 380
            L +++K ++ +  A P +       N+  W A+I GP+ TPYE G F+L     E+YP +PP V+FL+++FHPNV +  GEICLDIL+N W+P + + S+  +I +L   P P SP N ++  L +
Sbjct:    9 LMRDFKRMKED--APPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNV-YANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFK 131          
BLAST of DY257763 vs. ExPASy Swiss-Prot
Match: UBC13_YEAST (Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyces cerevisiae GN=UBC13 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.271e-23
Identity = 55/133 (41.35%), Postives = 83/133 (62.41%), Query Frame = 3
Query:   48 PDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAMPK 446
            P I     D N+  +   I+GP ++PYE G+F+L   +P+ YP++ P+VRFLTKI+HPN+  + G ICLD+LK  WSPA  +++V  +I AL+A P P+ PL  D        + +G ++ AR +T+L A  K
Sbjct:   21 PGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNID-RLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNE-QGAKAKAREWTKLYAKKK 151          
The following BLAST results are available for this feature:
BLAST of DY257763 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
UBC1_COLGL3.676e-2338.89Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletot... [more]
UBC1_ARATH3.676e-2339.52Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis t... [more]
UBE2A_MOUSE4.801e-2341.13Ubiquitin-conjugating enzyme E2 A OS=Mus musculus ... [more]
UBE2A_HUMAN4.801e-2341.13Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens ... [more]
UBC2_MEDSA4.801e-2339.52Ubiquitin-conjugating enzyme E2 2 OS=Medicago sati... [more]
UBC1_SCHPO4.801e-2343.86Ubiquitin-conjugating enzyme E2 1 OS=Schizosacchar... [more]
UBC2_YEAST6.271e-2339.68Ubiquitin-conjugating enzyme E2 2 OS=Saccharomyces... [more]
UBC2_DEBHA6.271e-2338.89Ubiquitin-conjugating enzyme E2 2 OS=Debaryomyces ... [more]
UBC2_ASHGO6.271e-2339.68Ubiquitin-conjugating enzyme E2 2 OS=Ashbya gossyp... [more]
UBC13_YEAST6.271e-2341.35Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyce... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAB1BC02ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257763 ID=DY257763; Name=DY257763; organism=Citrus clementina; type=EST; length=748bp
GGTTATTCAAGGAGTACAAAGAAGTGCAGCGAGAGAAATCAGCTGACCCA
GACATTCAATTAGTTTGTGATGATTCCAACATATTTAAATGGACTGCTCT
TATTAAGGGACCATCAAAGACTCCTTATGAGGGTGGGGTATTCCAGCTTG
CTTTTGCTGTTCCTGAGCAATATCCTCTGCAACCTCCACAAGTGCGGTTT
TTAACAAAAATATTCCATCCAAATGTGCATTTTAAGACAGGAGAGATATG
CCTTGACATATTGAAGAACGCATGGAGCCCAGCTTGGACGCTTCAGTCTG
TTTGTAGGGCTATAATCGCTTTGATGGCACATCCAGAACCTGATAGTCCA
CTAAATTGTGATTCAGGCAACCTTTTACGCTCAGGTGATATAAGAGGATT
TCAATCCATGGCAAGGATGTACACTAGACTTGCGGCAATGCCAAAGAAGG
GGTGATTGACGAAGCCCTATTCAGTGTTATAAATTATGAGAGCGTGATGT
TATATAATTGTGACTGAACAACTATGGTTCTGTGGCTACATCCAGAGATT
TTTTCTTTTTTTTTAAAAAAGCTTTTTGAACTCTAATTTTCTATTTTCAT
TGCGTAAAATTGGAATGCAGAAATTGTCTTCAATATGGTCGACCGTGCCA
AGCACTATAATGGGACTTCTGCTGGGTTATTGTGTAAAAATTATAACATT
TGGTCCTGTACAATTCATCATGTGAAAATGAAACGTTAGGTTATTATT
back to top