DY257808

Overview
NameDY257808
Unique NameDY257808
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length559
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9860 contig Ccv1_Contig9860:10..568. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257808 vs. ExPASy Swiss-Prot
Match: SUI1_ASHGO (Protein translation factor SUI1 OS=Ashbya gossypii GN=SUI1A PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.271e-24
Identity = 50/92 (54.35%), Postives = 69/92 (75.00%), Query Frame = 2
Query:  206 DSGAGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKTLKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 481
            D  A S  Y+HIR+QQRNGRK+LTTVQG+ +E+   + LK L+K+F CNG +V+D E+G++IQLQGDQR  V  FL+    + K++IK+HGF
Sbjct:   17 DDEASSSNYIHIRIQQRNGRKTLTTVQGIPEEYDLKRILKVLRKDFGCNGNMVKDDEMGEIIQLQGDQRAKVCEFLITQLAIPKKNIKIHGF 108          
BLAST of DY257808 vs. ExPASy Swiss-Prot
Match: SUI1_SCHPO (Protein translation factor sui1 OS=Schizosaccharomyces pombe GN=sui1 PE=2 SV=3)

HSP 1 Score: 110.538 bits (275), Expect = 5.579e-24
Identity = 53/92 (57.61%), Postives = 69/92 (75.00%), Query Frame = 2
Query:  206 DSGAGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKTLKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 481
            D  A     +HIR+QQRNGRK+LTTVQGL +EF   + L+ LKK+F CNGT+V+D +LG+VIQLQGDQR  V  FL Q   ++K++IK+HGF
Sbjct:   18 DDDAQPLNNIHIRIQQRNGRKTLTTVQGLPREFDQKRILRALKKDFACNGTIVKDDDLGEVIQLQGDQRIKVMEFLTQQLGLQKKNIKIHGF 109          
BLAST of DY257808 vs. ExPASy Swiss-Prot
Match: EIF1_CHICK (Eukaryotic translation initiation factor 1 (Fragment) OS=Gallus gallus GN=EIF1 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.052e-22
Identity = 46/79 (58.23%), Postives = 62/79 (78.48%), Query Frame = 2
Query:  245 VQQRNGRKSLTTVQGLKKEFSYNKTLKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 481
            +QQRNGRK+LTTVQG+  ++   K +K  KK+F CNGTV++ PE G+VIQLQGDQRKN+  FLV+ G+ K + +K+HGF
Sbjct:    1 IQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 79          
The following BLAST results are available for this feature:
BLAST of DY257808 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
SUI1_ASHGO3.271e-2454.35Protein translation factor SUI1 OS=Ashbya gossypii... [more]
SUI1_SCHPO5.579e-2457.61Protein translation factor sui1 OS=Schizosaccharom... [more]
EIF1_CHICK1.052e-2258.23Eukaryotic translation initiation factor 1 (Fragme... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAB1CD07ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257808 ID=DY257808; Name=DY257808; organism=Citrus clementina; type=EST; length=559bp
GGGGGAGCTTCAGACTTATACGAATCCGATTTAGGGTTTCTTTTTGATCT
TATCAGATCGGACTATCTCGATTATTAAACCCTAATCTTCGGATCAGGTC
TGAGCATTCCGGTTGTTGGGCCCCTTGCATCAGCTGAGGTTCATGTCTGA
TTTTGATATCCAGGTTCCTGCTGCCTTTGACCCGTTTGCTGATGCAAAGG
CTGAGGACTCAGGTGCTGGTTCAAAAGAGTATGTGCATATCCGTGTTCAG
CAACGGAATGGTAGGAAAAGCCTGACAACTGTCCAGGGGTTGAAGAAAGA
ATTTAGTTACAACAAAACCCTCAAGGACCTCAAAAAGGAATTTTGCTGCA
ATGGAACAGTGGTCCAGGATCCTGAACTAGGACAGGTCATTCAACTCCAA
GGTGACCAGCGGAAGAATGTATCTACGTTCCTTGTTCAGGCTGGGATTGT
GAAGAAGGAACATATCAAAATGCATGGCTTTTAAGTAAACAGCAACTTCC
GTTTCTGCACATTTGGTGACCCGCGTTCGTCAGTGCAGTGCAGAACATGC
TATTGATAC
back to top