DY257816

Overview
NameDY257816
Unique NameDY257816
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length897
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14757 contig Ccv1_Contig14757:204..1100. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257816 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2)

HSP 1 Score: 278.485 bits (711), Expect = 3.613e-74
Identity = 134/243 (55.14%), Postives = 168/243 (69.14%), Query Frame = 3
Query:    6 MFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNET-MRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVG-AASSDYCDPN--YPCRG--KYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYG 716
            +F+ +L +RND  CPA  FYTYDAF+ AA AFP F  +G +    KRE+AAF AQT HETTGGW  AP G YAWGYCF  E G AA  DYC  +  +PC    KYYGRGPIQL++N+NY   G+ +G   DLL +PDL+A++      +SF +A WFWMT Q PKPSCH V   +W PSA+D  AGR+PGYG+ TNIINGG+ECG+G +D V +RIGF+  +C   G+    NLDC +QRP+G
Sbjct:   89 LFDQMLLHRNDAACPASNFYTYDAFVAAASAFPGFAAAGGDADTNKREVAAFLAQTSHETTGGWATAPDGPYAWGYCFKEENGGAAGPDYCQQSAQWPCAAGKKYYGRGPIQLSYNFNYGPAGQAIGA--DLLGDPDLVASD----ATVSFDTAFWFWMTPQSPKPSCHAVATGQWTPSADDQAAGRVPGYGVITNIINGGLECGHGEDDRVADRIGFYKRYCDILGVSYDANLDCYSQRPFG 325          
BLAST of DY257816 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 5.768e-72
Identity = 127/237 (53.59%), Postives = 164/237 (69.20%), Query Frame = 3
Query:    3 EMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRGKYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 713
            E+FE +L +RN+  CPA+ FYTYDAFI AA +FP FG +G++T RK+EIAAFF QT HET GG      G +  GYCF R++  +             +YYGRGPIQLT   NY R G+G+G G+DL+NNPDL+AT+     ++SF++AIWFWMTAQ  KPSCH VII +W PS  D  A R+PGYG+ TNIINGG+EC  G N AV +RIGF+  +CG   +  G+NLDC+NQ+ +
Sbjct:   34 ELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETKGG----SAGTFTGGYCFVRQIDQSD------------RYYGRGPIQLTHQSNYERAGQGIGVGQDLVNNPDLVATDP----IISFRTAIWFWMTAQDNKPSCHNVIIGQWTPSPADTAANRVPGYGVITNIINGGLECNMGPNTAVESRIGFYRRYCGMLNVPTGENLDCNNQKNF 250          
BLAST of DY257816 vs. ExPASy Swiss-Prot
Match: CHIA_SOLLC (Acidic 26 kDa endochitinase OS=Solanum lycopersicum GN=CHI3 PE=1 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 3.165e-70
Identity = 124/237 (52.32%), Postives = 161/237 (67.93%), Query Frame = 3
Query:    3 EMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRGKYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 713
            E+FE +L +RN+  CPA+ FYTYDAFI AA +FP FG +G++T RK+EIAAFF QT HET GG      G +  GYCF +++  +             +YYGRGPIQLT   NY R G+G+G G++L+NNPDL+AT+     ++SFK+AIWFWMT Q  KPSCH VII +W PS  D  A R+PGYG+ TNIING  ECG G N A  +RIGF+  +CG   +  G+NLDC+NQ+ +
Sbjct:   34 ELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTAGDDTARKKEIAAFFGQTSHETNGG----SAGTFTGGYCFVKQIEQSD------------RYYGRGPIQLTHQSNYERAGQGIGVGQELVNNPDLVATDP----IISFKTAIWFWMTEQDNKPSCHNVIIGQWTPSPKDTAANRVPGYGVITNIINGQFECGMGPNTAAESRIGFYRRYCGMLNVPTGENLDCNNQKNF 250          
BLAST of DY257816 vs. ExPASy Swiss-Prot
Match: CHI11_ORYSJ (Chitinase 11 OS=Oryza sativa subsp. japonica GN=Cht11 PE=2 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 9.209e-70
Identity = 127/238 (53.36%), Postives = 165/238 (69.33%), Query Frame = 3
Query:    6 MFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRGKYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYG-GNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYG 716
            MFE +L +R D+ C    FYTYDAFI+AA  FP FG +GN+  R+RE+AAFF QT HETTGGW  AP G +AWGYC   E+  +     DP       YYGRGPIQLT  YNY   G+ LG   DL+NNPDL++++     V++F++AIWFWMTAQ PKPSCH+VI ++W PS +D ++GRLPGYG+ TNIINGG ECG G   D  ++R+G++  +C  F +  GDN+ C +Q+PYG
Sbjct:   35 MFESMLSHRGDQGCQG-AFYTYDAFIKAAGDFPRFGTTGNDETRRRELAAFFGQTSHETTGGWATAPDGPFAWGYCRVNEITPS-----DP------PYYGRGPIQLTHKYNYQLAGDALGL--DLVNNPDLVSSDP----VVAFRTAIWFWMTAQSPKPSCHDVITNQWTPSGDDRSSGRLPGYGMATNIINGGEECGKGYSTDNAKDRVGYYKRYCDMFRVGYGDNIACRDQKPYG 254          
BLAST of DY257816 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 4.570e-69
Identity = 131/237 (55.27%), Postives = 162/237 (68.35%), Query Frame = 3
Query:    3 EMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRGKYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 713
            ++F ++L+ RND RCPA+ FYTYDAFI AA +FP FG +G++T RK+EIAAFF QT HETTGG   A G  +A GYCF RE     S +           YGRGPIQLT   NY   G+ +G  +DL+NNPDL+AT+      +SFK+AIWFWMTAQ  KPSCH+VI  +W PSA D +A R PGYG+ TNIINGGIECG G N  V +RIGF+  +C    + PGDNLDC +QR +
Sbjct:   26 DLFNEMLKNRNDDRCPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGGSLSADG-PFAGGYCFVREGNQMGSGF-----------YGRGPIQLTGQSNYDLAGQAIG--QDLVNNPDLVATD----ATVSFKTAIWFWMTAQGNKPSCHDVITGQWTPSAADASANRQPGYGVITNIINGGIECGKGQNPQVEDRIGFYRRYCTILNVAPGDNLDCYDQRNF 244          
BLAST of DY257816 vs. ExPASy Swiss-Prot
Match: CHIQ_TOBAC (Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 7.796e-69
Identity = 130/238 (54.62%), Postives = 164/238 (68.91%), Query Frame = 3
Query:    3 EMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRGKYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYG 716
            ++F ++L+ RND RCPA  FYTYDAFI AA +FP FG +G++T R++EIAAFF QT HETTGG   A    +  GYCF R+     +D  D       +YYGRGPIQLT   NY + G  +G  ++L+NNPDL+AT+      +SFK+AIWFWMT Q  KPS H+VII  W PSA D  A R+PGYG+ TNIINGGIECG G NDAV +RIG++  +CG   + PG+NLDC NQR +G
Sbjct:   34 DLFNEMLKNRNDGRCPANGFYTYDAFIAAANSFPGFGTTGDDTARRKEIAAFFGQTSHETTGGSLSAE--PFTGGYCFVRQ-----NDQSD-------RYYGRGPIQLTNRNNYEKAGTAIG--QELVNNPDLVATD----ATISFKTAIWFWMTPQDNKPSSHDVIIGRWTPSAADQAANRVPGYGVITNIINGGIECGIGRNDAVEDRIGYYRRYCGMLNVAPGENLDCYNQRNFG 251          
BLAST of DY257816 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 9.529e-67
Identity = 129/237 (54.43%), Postives = 160/237 (67.51%), Query Frame = 3
Query:    3 EMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRGKYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 713
            ++F ++L+ RND RCPA  FYTYDAFI AA +FP FG SG++T R++EIAAFF QT HETTGG   A    +  GYCF R+     +D  D       +YYGRGPIQLT   NY + G  +   +DL+NNPDL+AT+      +SFK+AIWFWMT Q  KPS H+VII  W PSA D +A R PG G+ TNIINGGIECG G N AV +RIG++  +CG   + PGDNLDC NQR +
Sbjct:   34 DLFNEMLKNRNDGRCPANGFYTYDAFIAAANSFPGFGTSGDDTARRKEIAAFFGQTSHETTGGSLSAE--PFTGGYCFVRQ-----NDQSD-------RYYGRGPIQLTNQNNYEKAGNAIR--QDLVNNPDLVATD----ATISFKTAIWFWMTPQDNKPSSHDVIIGSWTPSAADQSANRAPGCGVITNIINGGIECGVGPNAAVEDRIGYYRRYCGMLNVAPGDNLDCYNQRNF 250          
BLAST of DY257816 vs. ExPASy Swiss-Prot
Match: CHI8_ORYSJ (Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht8 PE=2 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 4.729e-66
Identity = 128/237 (54.01%), Postives = 157/237 (66.24%), Query Frame = 3
Query:    6 MFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNET-MRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRGKYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 713
            +F  +L  R++ +CPAR FYTYDAFI AA +FPAFG SG    + +RE+AAFF QT HETTGG   +   ++ WGYCF  E+  A+S            YYGRGPIQLT   NY   G  LG   DL+ NPDL++T+     V+SFK+AIWFWMTAQ  KPSCH+VI+  W PSA D  AGR+PGYG+ TNIINGGIECG G NDA  +RIG++  +C   G   G NLDC NQR +
Sbjct:   40 VFNSMLPNRDNSQCPARGFYTYDAFIAAANSFPAFGTSGGSAELIRRELAAFFGQTSHETTGGTRGS-SDQFQWGYCFKEEINKATSP----------PYYGRGPIQLTGQSNYQAAGNALGL--DLVGNPDLVSTD----AVVSFKTAIWFWMTAQGNKPSCHDVILGRWTPSAADTAAGRVPGYGVITNIINGGIECGVGQNDANVDRIGYYKRYCDMLGAGYGSNLDCYNQRNF 259          
BLAST of DY257816 vs. ExPASy Swiss-Prot
Match: CHIB_POPTR (Acidic endochitinase WIN6.2B OS=Populus trichocarpa PE=2 SV=2)

HSP 1 Score: 249.595 bits (636), Expect = 1.797e-65
Identity = 125/242 (51.65%), Postives = 150/242 (61.98%), Query Frame = 3
Query:    6 MFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRGKYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGG-NDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLM 728
            MF+D+L+YRND +CPA  FYTY+AFI AAK FP FGN+G++ MRKREIAAF  QT HET G WP A G +Y WGYC                                 NYNY  CG+ L     LL  P+L+ T+      ++FK+A+WFWMT Q PKPSCH VI + W PSA D  AGR+PGYG+ TNIINGGIECG GG N+A  NRIGF+ T+C   G   G NLDC  QRP+G  L+
Sbjct:   93 MFDDMLKYRNDPQCPAVGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAFLGQTSHETNGWWPAAQGDQYDWGYCH-------------------------------MNYNYGLCGDDLNL--PLLQEPELVETDP----FIAFKTALWFWMTPQSPKPSCHAVITESWTPSAADSEAGRVPGYGVITNIINGGIECGQGGPNNANENRIGFYKTYCDSLGTTYGSNLDCYQQRPFGYGLL 297          
BLAST of DY257816 vs. ExPASy Swiss-Prot
Match: CHIT_PETHY (Acidic endochitinase OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 2.347e-65
Identity = 128/237 (54.01%), Postives = 157/237 (66.24%), Query Frame = 3
Query:    3 EMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRGKYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 713
            ++F+ +L+ RND RC A  FYTYDAFI AA +FP FG +G++T RK+EIAAFF QT HETTGG   +P G YA GYCF RE     + Y           YGRGPIQLT   NY   G+ +   +DL+NNPDL+AT+      +SFK+AIWFWMT Q  KPSCH+VI   W PSA D +A R+PGYG+ TNIINGGIECG G N  V +RIG++        + PGDNLDC NQR +
Sbjct:   33 DLFDQMLKNRNDARCFAVRFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGGTL-SPDGPYAGGYCFLREGNQMGNGY-----------YGRGPIQLTGQSNYDLAGKAIE--QDLVNNPDLVATD----ATVSFKTAIWFWMTPQGNKPSCHDVITGRWTPSAADTSANRVPGYGVITNIINGGIECGKGQNARVEDRIGYYRRNVSIMNVAPGDNLDCYNQRNF 251          
The following BLAST results are available for this feature:
BLAST of DY257816 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI12_ORYSJ3.613e-7455.14Chitinase 12 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIA_SOLCI5.768e-7253.59Acidic endochitinase pcht28 OS=Solanum chilense PE... [more]
CHIA_SOLLC3.165e-7052.32Acidic 26 kDa endochitinase OS=Solanum lycopersicu... [more]
CHI11_ORYSJ9.209e-7053.36Chitinase 11 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIB_SOLLC4.570e-6955.27Acidic 27 kDa endochitinase OS=Solanum lycopersicu... [more]
CHIQ_TOBAC7.796e-6954.62Acidic endochitinase Q OS=Nicotiana tabacum PE=1 S... [more]
CHIP_TOBAC9.529e-6754.43Acidic endochitinase P OS=Nicotiana tabacum PE=1 S... [more]
CHI8_ORYSJ4.729e-6654.01Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIB_POPTR1.797e-6551.65Acidic endochitinase WIN6.2B OS=Populus trichocarp... [more]
CHIT_PETHY2.347e-6554.01Acidic endochitinase OS=Petunia hybrida PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1CE08ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257816 ID=DY257816; Name=DY257816; organism=Citrus clementina; type=EST; length=897bp
GGGAGATGTTTGAAGACTTGCTTGAGTATAGAAATGATAAACGATGCCCT
GCCAGATGCTTCTACACTTATGATGCTTTTATAGAGGCAGCCAAAGCTTT
TCCAGCCTTTGGTAACTCTGGAAATGAAACCATGCGTAAAAGAGAAATTG
CTGCCTTTTTTGCCCAAACTGGCCATGAAACTACTGGGGGATGGCCCGAT
GCACCTGGTGGCGAATATGCTTGGGGATATTGCTTTAATAGGGAAGTTGG
CGCTGCGTCGTCCGACTACTGTGATCCTAACTATCCATGTCGAGGGAAGT
ACTATGGCCGAGGTCCAATTCAACTCACTTGGAATTACAATTACTTACGG
TGCGGAGAAGGCCTAGGGCGAGGAGAGGACTTGTTGAACAATCCAGACCT
TCTTGCTACTAATGATAAAGAAGGACGAGTACTATCATTCAAGTCAGCAA
TCTGGTTCTGGATGACTGCACAGCCACCAAAGCCATCGTGCCACGAAGTC
ATTATCGACGAATGGAAACCATCAGCAAATGACGTAAACGCCGGCCGGCT
TCCGGGATACGGTCTAACCACAAATATAATCAACGGTGGAATTGAATGTG
GCTACGGTGGGAATGACGCTGTACGTAACCGTATTGGGTTCTTTACCACT
TTCTGTGGCAAGTTTGGGATTCAGCCTGGTGACAATCTTGATTGCTCCAA
CCAACGGCCTTATGGCCTTAATCTGATGGCACAATCTATGTGATCATCAT
GATCAACGTTTTAGTAAAATAAGCTTAATAAAAGCTACTTAATAAAAACT
TTAGATGTCACACTTGTANGTGGACAACTAAACTGTTACGCTCTTATTGT
AAGTAAATTAAATAAGACTGATCCAACATGGATCAATGAGTCTTCTG
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