DY257827
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DY257827 vs. ExPASy Swiss-Prot
Match: MNMA1_BACTN (tRNA-specific 2-thiouridylase mnmA 1 OS=Bacteroides thetaiotaomicron GN=mnmA1 PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.384e-16 Identity = 49/131 (37.40%), Postives = 76/131 (58.02%), Query Frame = 1 Query: 1 GFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISR---LQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY--QGTRCIGSGVI 378 G+WF+TIGQR+GL L GGPW+V++KDV+ N+++VS Y + FR+ +++ P ++ + + K+RH P F L+ E+GG+ + SE QG+A GQF Y + C+GSG I Sbjct: 228 GYWFHTIGQRKGLGLSGGPWFVIKKDVEENIIYVSHGYGVETQFGSEFRINDFHFITENPWKDAGKEIDITFKIRHTPEFTKGKLV---QEEGGQ--FRILSSEKLQGIAPGQFGVIYDEEAGICVGSGEI 353
BLAST of DY257827 vs. ExPASy Swiss-Prot
Match: MNMA_PARD8 (tRNA-specific 2-thiouridylase mnmA OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=mnmA PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.999e-15 Identity = 45/133 (33.83%), Postives = 75/133 (56.39%), Query Frame = 1 Query: 1 GFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEI---SRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR--CIGSGVILE 384 G+WF+TIGQR+GL L GGPW+V++KD+K N+++VS Y + ++ + +++ P E + K+RH P F + I + D + V+ E QG+A GQ++ Y C+GSG+I++ Sbjct: 229 GYWFHTIGQRKGLGLSGGPWFVIQKDIKRNIIYVSNGYDPETQYGKVINMQGFDFITEDPWGEFEGEKEITFKIRHTPEF--THGYIRRIGD----LYRVESDEKIQGIAPGQYSVIYDKDHHLCLGSGMIID 355
BLAST of DY257827 vs. ExPASy Swiss-Prot
Match: MNMA_MARAV (tRNA-specific 2-thiouridylase mnmA OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=mnmA PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.692e-14 Identity = 52/161 (32.30%), Postives = 79/161 (49.07%), Query Frame = 1 Query: 1 GFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVILESW-DDQGFPVCEKALEIARMEDKSKLG 462 G ++TIGQRQGL + G PWYV EKD+K NV+ + + R G + W++G PP + R + K R+ +C + V DGG + + + + GQ FYQG C+G GVI ++W D++ P AR+E ++ G Sbjct: 243 GLMYHTIGQRQGLGIGGLAEFGDEPWYVAEKDLKRNVLIAVQGKHHPLLFSRGLVSGPVDWVAGEPPAQKFRCKAKTRYRQPDQDCEVT---VIDGGVKVV---FDDAQRAVTPGQSVVFYQGEVCLGGGVIEQTWRDNEALP--------ARLEHQASEG 389
BLAST of DY257827 vs. ExPASy Swiss-Prot
Match: MNMA_CHRSD (tRNA-specific 2-thiouridylase mnmA OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=mnmA PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.097e-13 Identity = 43/137 (31.39%), Postives = 67/137 (48.91%), Query Frame = 1 Query: 1 GFWFYTIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVILESWD 393 G +YT+GQRQGL + P PWYV KD++ NV+ + + ++W++G PP +RLQ K R+ C++ + +EDGG + E + + GQ Y G C+G GVI +W+ Sbjct: 243 GLMYYTLGQRQGLGIGGLPNHPDAPWYVAAKDLERNVLIAVQGKHHPLLYTDSLSTEPVEWVAGQPPAPEARLQAKTRYRQQDVACHVRV--LEDGGVE---ARFDEPQRAVTPGQSLVLYDGDICLGGGVIRSTWN 374
BLAST of DY257827 vs. ExPASy Swiss-Prot
Match: MNMA_PORG3 (tRNA-specific 2-thiouridylase mnmA OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=mnmA PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.433e-13 Identity = 46/135 (34.07%), Postives = 70/135 (51.85%), Query Frame = 1 Query: 1 GFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG-------LPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR--CIGSGVI 378 G+WF+TIGQR+GL L GGPW+VV+KD+K N++ VSR Y + + + + +++ E+ + + K+RH P F L GE ++ E QG+A GQ+ Y C GSG+I Sbjct: 229 GYWFHTIGQRKGLGLSGGPWFVVKKDIKRNIILVSRGYDPDTQYGKTIEMETFDFITEDAYEAGYWNREDATPVTFKIRHTPEFTRGLLY------KGEKGYRLESEERIQGIAPGQYCVIYDEDHHLCYGSGMI 357
BLAST of DY257827 vs. ExPASy Swiss-Prot
Match: MNMA_PORGI (tRNA-specific 2-thiouridylase mnmA OS=Porphyromonas gingivalis GN=mnmA PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.871e-13 Identity = 46/135 (34.07%), Postives = 70/135 (51.85%), Query Frame = 1 Query: 1 GFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG-------LPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR--CIGSGVI 378 G+WF+TIGQR+GL L GGPW+VV+KD+K N++ VSR Y + + + + +++ E+ + + K+RH P F L GE ++ E QG+A GQ+ Y C GSG+I Sbjct: 229 GYWFHTIGQRKGLGLSGGPWFVVKKDIKRNIILVSRGYDPDAQYGKTIEMETFDFITEDAYEAGYWNREDATPVTFKIRHTPEFTRGLLY------KGEKGYRLESEERIQGIAPGQYCVIYDEDHHLCYGSGMI 357
BLAST of DY257827 vs. ExPASy Swiss-Prot
Match: MNMA1_BACV8 (tRNA-specific 2-thiouridylase mnmA 1 OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=mnmA1 PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 3.192e-13 Identity = 47/133 (35.34%), Postives = 65/133 (48.87%), Query Frame = 1 Query: 1 GFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNY-----YSFDKKRRLFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR--CIGSGVI 378 G+WF+TIGQR+GL L GGPW+V+ KD+ N+++VS Y Y D F + G P ++S K+RH F L E +N+ + QG+A GQF Y C+GSG I Sbjct: 228 GYWFHTIGQRKGLGLGGGPWFVIRKDIDENIIYVSHGYDTDKQYGTDFALHDFHFITEDLWKGAPSADVS---FKIRHTDTFMKGILTRE------DNLFRIHSHVPLQGIAPGQFGVLYDKNAEICVGSGEI 351
BLAST of DY257827 vs. ExPASy Swiss-Prot
Match: MNMA_HAHCH (tRNA-specific 2-thiouridylase mnmA OS=Hahella chejuensis (strain KCTC 2396) GN=mnmA PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 7.110e-13 Identity = 47/136 (34.56%), Postives = 66/136 (48.53%), Query Frame = 1 Query: 1 GFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVI 378 G ++TIGQRQGL + G PWYVVEKD+ NN + V++ RLF G L W++G+P + K R+ C + V+DGG + + + + GQ FY G RC+G GVI Sbjct: 234 GLMYHTIGQRQGLGIGGLKGYDDAPWYVVEKDLDNNELVVAQG----GDHPRLFSAGLTASKLDWINGVPAKSSFSCYAKTRYRQPDQLCRV---DVQDGGVRVT---FDKRQRAVTPGQSVVFYDGARCLGGGVI 359
BLAST of DY257827 vs. ExPASy Swiss-Prot
Match: MTU1_CHICK (Mitochondrial tRNA-specific 2-thiouridylase 1 OS=Gallus gallus GN=TRMU PE=2 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 9.286e-13 Identity = 47/132 (35.61%), Postives = 70/132 (53.03%), Query Frame = 1 Query: 1 GFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISR---LQC--KVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVIL 381 G++ YTIGQR L G W+VV+KDV +FV+ + R L R + W++ PP E+ R ++C + RH C L + +DG + +V+ + + L GQFA FY+G C+GSG IL Sbjct: 267 GWFLYTIGQRARLAGLQGAWFVVDKDVSTGDIFVAPSTDHPALFRDLLRTNRVHWIAEEPPAELVRDKMMECHFRFRHQMALVPCVLTLN--QDGSVWVTLVKPA---RALTPGQFAVFYKGDECLGSGKIL 393
BLAST of DY257827 vs. ExPASy Swiss-Prot
Match: MNMA_DICNV (tRNA-specific 2-thiouridylase mnmA OS=Dichelobacter nodosus (strain VCS1703A) GN=mnmA PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.069e-12 Identity = 46/132 (34.85%), Postives = 64/132 (48.48%), Query Frame = 1 Query: 1 GFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVI 378 G +YTIGQRQGL + G PWYV+EKD+ NNV+ V + + R+ G L WL+ P K R+ C +++ DG + QL + + GQ+A Y G RC+G GVI Sbjct: 240 GLMYYTIGQRQGLGIGGIAGASEEPWYVLEKDLSNNVLIVGQGDHPL-LYHRVLIAGQLSWLNEAPIAG-RFYHAKTRYRQSDQKCR--VDYAADGRLQLTFEQL---QRAITLGQYAVIYDGERCLGGGVI 364 The following BLAST results are available for this feature:
BLAST of DY257827 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 51
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Sequences
The
following sequences are available for this feature:
EST sequence >DY257827 ID=DY257827; Name=DY257827; organism=Citrus clementina; type=EST; length=716bpback to top |