DY257827

Overview
NameDY257827
Unique NameDY257827
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10018 contig Ccv1_Contig10018:4..719. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257827 vs. ExPASy Swiss-Prot
Match: MNMA1_BACTN (tRNA-specific 2-thiouridylase mnmA 1 OS=Bacteroides thetaiotaomicron GN=mnmA1 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.384e-16
Identity = 49/131 (37.40%), Postives = 76/131 (58.02%), Query Frame = 1
Query:    1 GFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISR---LQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY--QGTRCIGSGVI 378
            G+WF+TIGQR+GL L GGPW+V++KDV+ N+++VS  Y    +    FR+    +++  P ++  +   +  K+RH P F    L+    E+GG+    +  SE  QG+A GQF   Y  +   C+GSG I
Sbjct:  228 GYWFHTIGQRKGLGLSGGPWFVIKKDVEENIIYVSHGYGVETQFGSEFRINDFHFITENPWKDAGKEIDITFKIRHTPEFTKGKLV---QEEGGQ--FRILSSEKLQGIAPGQFGVIYDEEAGICVGSGEI 353          
BLAST of DY257827 vs. ExPASy Swiss-Prot
Match: MNMA_PARD8 (tRNA-specific 2-thiouridylase mnmA OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=mnmA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.999e-15
Identity = 45/133 (33.83%), Postives = 75/133 (56.39%), Query Frame = 1
Query:    1 GFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEI---SRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR--CIGSGVILE 384
            G+WF+TIGQR+GL L GGPW+V++KD+K N+++VS  Y    +  ++  +    +++  P  E      +  K+RH P F   +  I  + D    +  V+  E  QG+A GQ++  Y      C+GSG+I++
Sbjct:  229 GYWFHTIGQRKGLGLSGGPWFVIQKDIKRNIIYVSNGYDPETQYGKVINMQGFDFITEDPWGEFEGEKEITFKIRHTPEF--THGYIRRIGD----LYRVESDEKIQGIAPGQYSVIYDKDHHLCLGSGMIID 355          
BLAST of DY257827 vs. ExPASy Swiss-Prot
Match: MNMA_MARAV (tRNA-specific 2-thiouridylase mnmA OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=mnmA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.692e-14
Identity = 52/161 (32.30%), Postives = 79/161 (49.07%), Query Frame = 1
Query:    1 GFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVILESW-DDQGFPVCEKALEIARMEDKSKLG 462
            G  ++TIGQRQGL + G       PWYV EKD+K NV+   +  +      R    G + W++G PP +  R + K R+     +C +    V DGG  +      +  + +  GQ   FYQG  C+G GVI ++W D++  P        AR+E ++  G
Sbjct:  243 GLMYHTIGQRQGLGIGGLAEFGDEPWYVAEKDLKRNVLIAVQGKHHPLLFSRGLVSGPVDWVAGEPPAQKFRCKAKTRYRQPDQDCEVT---VIDGGVKVV---FDDAQRAVTPGQSVVFYQGEVCLGGGVIEQTWRDNEALP--------ARLEHQASEG 389          
BLAST of DY257827 vs. ExPASy Swiss-Prot
Match: MNMA_CHRSD (tRNA-specific 2-thiouridylase mnmA OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=mnmA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.097e-13
Identity = 43/137 (31.39%), Postives = 67/137 (48.91%), Query Frame = 1
Query:    1 GFWFYTIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVILESWD 393
            G  +YT+GQRQGL +      P  PWYV  KD++ NV+   +  +             ++W++G PP   +RLQ K R+      C++ +  +EDGG      +  E  + +  GQ    Y G  C+G GVI  +W+
Sbjct:  243 GLMYYTLGQRQGLGIGGLPNHPDAPWYVAAKDLERNVLIAVQGKHHPLLYTDSLSTEPVEWVAGQPPAPEARLQAKTRYRQQDVACHVRV--LEDGGVE---ARFDEPQRAVTPGQSLVLYDGDICLGGGVIRSTWN 374          
BLAST of DY257827 vs. ExPASy Swiss-Prot
Match: MNMA_PORG3 (tRNA-specific 2-thiouridylase mnmA OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=mnmA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.433e-13
Identity = 46/135 (34.07%), Postives = 70/135 (51.85%), Query Frame = 1
Query:    1 GFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG-------LPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR--CIGSGVI 378
            G+WF+TIGQR+GL L GGPW+VV+KD+K N++ VSR Y    +  +   + +  +++           E+ + +  K+RH P F    L        GE    ++  E  QG+A GQ+   Y      C GSG+I
Sbjct:  229 GYWFHTIGQRKGLGLSGGPWFVVKKDIKRNIILVSRGYDPDTQYGKTIEMETFDFITEDAYEAGYWNREDATPVTFKIRHTPEFTRGLLY------KGEKGYRLESEERIQGIAPGQYCVIYDEDHHLCYGSGMI 357          
BLAST of DY257827 vs. ExPASy Swiss-Prot
Match: MNMA_PORGI (tRNA-specific 2-thiouridylase mnmA OS=Porphyromonas gingivalis GN=mnmA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.871e-13
Identity = 46/135 (34.07%), Postives = 70/135 (51.85%), Query Frame = 1
Query:    1 GFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG-------LPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR--CIGSGVI 378
            G+WF+TIGQR+GL L GGPW+VV+KD+K N++ VSR Y    +  +   + +  +++           E+ + +  K+RH P F    L        GE    ++  E  QG+A GQ+   Y      C GSG+I
Sbjct:  229 GYWFHTIGQRKGLGLSGGPWFVVKKDIKRNIILVSRGYDPDAQYGKTIEMETFDFITEDAYEAGYWNREDATPVTFKIRHTPEFTRGLLY------KGEKGYRLESEERIQGIAPGQYCVIYDEDHHLCYGSGMI 357          
BLAST of DY257827 vs. ExPASy Swiss-Prot
Match: MNMA1_BACV8 (tRNA-specific 2-thiouridylase mnmA 1 OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=mnmA1 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.192e-13
Identity = 47/133 (35.34%), Postives = 65/133 (48.87%), Query Frame = 1
Query:    1 GFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNY-----YSFDKKRRLFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR--CIGSGVI 378
            G+WF+TIGQR+GL L GGPW+V+ KD+  N+++VS  Y     Y  D     F   +     G P  ++S    K+RH   F    L  E      +N+  +      QG+A GQF   Y      C+GSG I
Sbjct:  228 GYWFHTIGQRKGLGLGGGPWFVIRKDIDENIIYVSHGYDTDKQYGTDFALHDFHFITEDLWKGAPSADVS---FKIRHTDTFMKGILTRE------DNLFRIHSHVPLQGIAPGQFGVLYDKNAEICVGSGEI 351          
BLAST of DY257827 vs. ExPASy Swiss-Prot
Match: MNMA_HAHCH (tRNA-specific 2-thiouridylase mnmA OS=Hahella chejuensis (strain KCTC 2396) GN=mnmA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.110e-13
Identity = 47/136 (34.56%), Postives = 66/136 (48.53%), Query Frame = 1
Query:    1 GFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVI 378
            G  ++TIGQRQGL + G       PWYVVEKD+ NN + V++         RLF  G     L W++G+P +       K R+      C +    V+DGG  +      +  + +  GQ   FY G RC+G GVI
Sbjct:  234 GLMYHTIGQRQGLGIGGLKGYDDAPWYVVEKDLDNNELVVAQG----GDHPRLFSAGLTASKLDWINGVPAKSSFSCYAKTRYRQPDQLCRV---DVQDGGVRVT---FDKRQRAVTPGQSVVFYDGARCLGGGVI 359          
BLAST of DY257827 vs. ExPASy Swiss-Prot
Match: MTU1_CHICK (Mitochondrial tRNA-specific 2-thiouridylase 1 OS=Gallus gallus GN=TRMU PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.286e-13
Identity = 47/132 (35.61%), Postives = 70/132 (53.03%), Query Frame = 1
Query:    1 GFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISR---LQC--KVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVIL 381
            G++ YTIGQR  L    G W+VV+KDV    +FV+ +       R L R   + W++  PP E+ R   ++C  + RH      C L +   +DG   + +V+ +   + L  GQFA FY+G  C+GSG IL
Sbjct:  267 GWFLYTIGQRARLAGLQGAWFVVDKDVSTGDIFVAPSTDHPALFRDLLRTNRVHWIAEEPPAELVRDKMMECHFRFRHQMALVPCVLTLN--QDGSVWVTLVKPA---RALTPGQFAVFYKGDECLGSGKIL 393          
BLAST of DY257827 vs. ExPASy Swiss-Prot
Match: MNMA_DICNV (tRNA-specific 2-thiouridylase mnmA OS=Dichelobacter nodosus (strain VCS1703A) GN=mnmA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.069e-12
Identity = 46/132 (34.85%), Postives = 64/132 (48.48%), Query Frame = 1
Query:    1 GFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVI 378
            G  +YTIGQRQGL + G       PWYV+EKD+ NNV+ V +  +      R+   G L WL+  P         K R+      C   +++  DG   +   QL    + +  GQ+A  Y G RC+G GVI
Sbjct:  240 GLMYYTIGQRQGLGIGGIAGASEEPWYVLEKDLSNNVLIVGQGDHPL-LYHRVLIAGQLSWLNEAPIAG-RFYHAKTRYRQSDQKCR--VDYAADGRLQLTFEQL---QRAITLGQYAVIYDGERCLGGGVI 364          
The following BLAST results are available for this feature:
BLAST of DY257827 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
MNMA1_BACTN1.384e-1637.40tRNA-specific 2-thiouridylase mnmA 1 OS=Bacteroide... [more]
MNMA_PARD81.999e-1533.83tRNA-specific 2-thiouridylase mnmA OS=Parabacteroi... [more]
MNMA_MARAV1.692e-1432.30tRNA-specific 2-thiouridylase mnmA OS=Marinobacter... [more]
MNMA_CHRSD1.097e-1331.39tRNA-specific 2-thiouridylase mnmA OS=Chromohaloba... [more]
MNMA_PORG31.433e-1334.07tRNA-specific 2-thiouridylase mnmA OS=Porphyromona... [more]
MNMA_PORGI1.871e-1334.07tRNA-specific 2-thiouridylase mnmA OS=Porphyromona... [more]
MNMA1_BACV83.192e-1335.34tRNA-specific 2-thiouridylase mnmA 1 OS=Bacteroide... [more]
MNMA_HAHCH7.110e-1334.56tRNA-specific 2-thiouridylase mnmA OS=Hahella chej... [more]
MTU1_CHICK9.286e-1335.61Mitochondrial tRNA-specific 2-thiouridylase 1 OS=G... [more]
MNMA_DICNV2.069e-1234.85tRNA-specific 2-thiouridylase mnmA OS=Dichelobacte... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1CH01ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257827 ID=DY257827; Name=DY257827; organism=Citrus clementina; type=EST; length=716bp
GGATTTTGGTTCTACACAATCGGTCAACGCCAAGGGCTACGTCTTCCTGG
AGGACCCTGGTATGTTGTTGAGAAGGATGTTAAGAACAATGTAGTGTTTG
TGTCGAGAAATTATTATTCGTTTGACAAGAAAAGACGCCTATTTCGTGTT
GGCTCTTTGAAATGGCTCAGTGGATTGCCTCCAGAGGAAATCAGTCGGCT
TCAGTGTAAGGTCAGACATGGTCCTGGTTTCTACAATTGCAATTTGATGA
TTGAACATGTTGAAGATGGTGGTGAGAACATTGCAGTTGTCCAGTTATCA
GAAGACGATCAAGGACTGGCAGCCGGCCAGTTTGCTGCCTTCTACCAGGG
AACAAGATGCATTGGCTCTGGTGTGATTTTGGAATCTTGGGATGATCAGG
GTTTCCCTGTATGTGAAAAAGCTCTCGAGATTGCAAGAATGGAAGATAAA
TCAAAGCTTGGGAAACCCATAAAGATAAAGGTAAAACCGGAGACTCCTGA
GGAGTTTAATTCTAATAAAGGTGTTCAAAGTAGTAGAAACTTGGTTAATG
CTCAAAACAGCATAGCAGAGAAAAGCAATACAACATCTCAAGAAGAAGCA
ATTTCTAGATTCCCGATGAATTGGTTGCAAAAGCTTAGAGAAAAATGGCC
ACGTATATTGTAGCTTCCATCATTTGTAGGCTTCAGCTTTGCTATTTCAT
GAGATGCCTATTCTTT
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