DY257827

Overview
NameDY257827
Unique NameDY257827
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10018 contig Ccv1_Contig10018:4..719. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257827 vs. ExPASy Swiss-Prot
Match: MNMA_FRATF (tRNA-specific 2-thiouridylase mnmA OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=mnmA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.987e-11
Identity = 41/133 (30.83%), Postives = 66/133 (49.62%), Query Frame = 1
Query:    1 GFWFYTIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVIL 381
            G  +YTIGQRQGL +      P  PW+  +KD++NNV+   + +      ++  +   L W++G+ P +  R   KVR+     +C   +E  +DG  N   V   +  + +  GQ   FY    C+G GVI+
Sbjct:  232 GLMYYTIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSWVAGMAPADKFRCAAKVRYRQKDQSCE--VEVNQDGSVN---VTFDQPQRAITPGQSVVFYIDDVCLGGGVII 359          
BLAST of DY257827 vs. ExPASy Swiss-Prot
Match: MNMA_FRAT1 (tRNA-specific 2-thiouridylase mnmA OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=mnmA PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.987e-11
Identity = 41/133 (30.83%), Postives = 66/133 (49.62%), Query Frame = 1
Query:    1 GFWFYTIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVIL 381
            G  +YTIGQRQGL +      P  PW+  +KD++NNV+   + +      ++  +   L W++G+ P +  R   KVR+     +C   +E  +DG  N   V   +  + +  GQ   FY    C+G GVI+
Sbjct:  232 GLMYYTIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSWVAGMAPADKFRCAAKVRYRQKDQSCE--VEVNQDGSVN---VTFDQPQRAITPGQSVVFYIDDVCLGGGVII 359          
BLAST of DY257827 vs. ExPASy Swiss-Prot
Match: MNMA_FRAP2 (tRNA-specific 2-thiouridylase mnmA OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=mnmA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.987e-11
Identity = 39/133 (29.32%), Postives = 64/133 (48.12%), Query Frame = 1
Query:    1 GFWFYTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVIL 381
            G  +YTIGQRQGL + G       PW+  +KD++NNV+   + +      +   +   L W++G  P +  R   KVR+      C++ + +  DG  N+      E  + +  GQ   FY    C+G G+I+
Sbjct:  232 GLMYYTIGQRQGLGIGGVKNRPEIPWFAAQKDLENNVLIAVQGHDHPMLFKDTLQAIDLSWVAGSAPADSFRCSAKVRYRQKDQPCSVEVNN--DGSVNVV---FDEPQRAITPGQSVVFYDNDVCLGGGIII 359          
BLAST of DY257827 vs. ExPASy Swiss-Prot
Match: MNMA_CHLCV (tRNA-specific 2-thiouridylase mnmA OS=Chlamydophila caviae GN=mnmA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.987e-11
Identity = 45/128 (35.16%), Postives = 65/128 (50.78%), Query Frame = 1
Query:    1 GFWFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVI 378
            G  +YTIGQR+GL L G   P YVV KD++ N+V++ R        +       L W   + PE I+R   KVR+      C ++  H ++  E    V+ S   + +  GQ  AFY G +C+G GVI
Sbjct:  232 GAHYYTIGQRRGLDLGGSEKPCYVVGKDMEKNIVYIVRGEDHPLLYQTELTAKELNWF--VSPESITRCSAKVRYRSEDEECEIL--HSDEDSE--VRVRFSSPVKAITPGQTIAFYDGEKCLGGGVI 353          
BLAST of DY257827 vs. ExPASy Swiss-Prot
Match: MNMA2_GEOKA (tRNA-specific 2-thiouridylase mnmA 2 OS=Geobacillus kaustophilus GN=mnmA2 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.987e-11
Identity = 42/130 (32.31%), Postives = 63/130 (48.46%), Query Frame = 1
Query:    1 GFWFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVILE 384
            G  +YTIGQR GL + G   PW+VV KDV+ NV++V++ + +        +   + W+S   PE   R   K R+     +  + +  + DGG   A V      + +  GQ   FY G  C+G G I E
Sbjct:  235 GVMYYTIGQRHGLGIGGSGEPWFVVGKDVRENVLYVAQGFENEYLYSTSLKAVDVNWVSDRKPEAPFRCTAKFRYRQP--DVGVTVHPLADGG---AEVVFDAPARAVTPGQAVVFYNGEECLGGGTIDE 359          
BLAST of DY257827 vs. ExPASy Swiss-Prot
Match: MNMA_NITMU (tRNA-specific 2-thiouridylase mnmA OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=mnmA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.901e-11
Identity = 44/138 (31.88%), Postives = 63/138 (45.65%), Query Frame = 1
Query:    1 GFWFYTIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVILESWDD 396
            G  +YTIGQRQGL +       G PW+V EKDVK NV+ V + +   D  R       L W+SG  P        K+R+      C++          N   ++ ++    +A GQ    Y+   C+G GVI  + DD
Sbjct:  231 GLMYYTIGQRQGLGIGGTRGGDGEPWFVSEKDVKRNVLTVVQGHDHPDLLRPALAATDLTWVSGKMPRCNWVYAAKIRYRQSDAPCSITYLDC-----NKCKIEFAQPQWAVAPGQSVVVYESKVCLGGGVIAATQDD 363          
BLAST of DY257827 vs. ExPASy Swiss-Prot
Match: MNMA_LACC3 (tRNA-specific 2-thiouridylase mnmA OS=Lactobacillus casei (strain ATCC 334) GN=mnmA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.901e-11
Identity = 41/131 (31.30%), Postives = 59/131 (45.04%), Query Frame = 1
Query:    1 GFWFYTIGQRQGLRLPGG-----PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVI 378
            G  +YTIGQRQGL + G      PW+VV KD+  N+++V + + +           +L W +G  P E + +  K R+        L   H  D G   A V      + +  GQ   FY G  C+G G I
Sbjct:  239 GLMYYTIGQRQGLGIGGNSDNSEPWFVVGKDLDKNILYVGQGFDNPALMATSLSASNLNWTTGQAPAEGTHMTAKFRYRQRDTGVTL---HYHDDG--TATVDFDVPVRAITPGQAVVFYDGDECLGGGTI 364          
BLAST of DY257827 vs. ExPASy Swiss-Prot
Match: MNMA_SHELP (tRNA-specific 2-thiouridylase mnmA OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=mnmA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.095e-11
Identity = 45/136 (33.09%), Postives = 66/136 (48.53%), Query Frame = 1
Query:    1 GFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVI 378
            G  ++T+GQR+GL + G       PWYVV+KD++ NV+ V +      K  RL  VG     L W+    P + +++  K R+      C L  E    G + I V+   E    +  GQ A FY G  C+G G+I
Sbjct:  239 GLMYHTLGQRKGLGIGGMKNSNDDPWYVVDKDLERNVLVVGQG----GKHPRLMSVGFYADQLHWVDRTGPNDGAKITVKTRYRQQDVACTLTYE----GDDRIKVI-FDEPVAAVTPGQSAVFYDGEVCLGGGII 365          
BLAST of DY257827 vs. ExPASy Swiss-Prot
Match: MNMA_GEOTN (tRNA-specific 2-thiouridylase mnmA OS=Geobacillus thermodenitrificans (strain NG80-2) GN=mnmA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.095e-11
Identity = 42/130 (32.31%), Postives = 63/130 (48.46%), Query Frame = 1
Query:    1 GFWFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVILE 384
            G  +YTIGQR GL + G   PW+VV KDV+ NV++V++ + +        +   + W+S   PE   R   K R+     +  +M+  + DG    A V      + +  GQ   FY G  C+G G I E
Sbjct:  235 GVMYYTIGQRHGLGIGGSGEPWFVVGKDVRENVLYVAQGFENEYLYSTSLKAVDVNWVSDRKPEAPFRCTAKFRYRQP--DIGVMVHPLADGK---AEVVFDAPARAVTPGQAVVFYNGDECLGGGTIDE 359          
BLAST of DY257827 vs. ExPASy Swiss-Prot
Match: MNMA_PSEHT (tRNA-specific 2-thiouridylase mnmA OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=mnmA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.655e-11
Identity = 39/132 (29.55%), Postives = 63/132 (47.73%), Query Frame = 1
Query:    1 GFWFYTIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVI 378
            G  ++T+GQR+GL +       G PWYVV+KD++ NV+ V +                L W+  + P+  +R   K R+     +C L++     G + +A V   E  + +  GQ A FY    C+G G+I
Sbjct:  235 GLMYHTLGQRKGLLIGGMKEGSGEPWYVVDKDLERNVLIVGQGKDHPRLYSNGLNANQLHWVDRIGPKGTTRCTVKTRYRQEDLSCTLLV-----GEDGMARVLFDEPQKAVTPGQSAVFYAEDVCLGGGII 361          
The following BLAST results are available for this feature:
BLAST of DY257827 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
MNMA_FRATF2.987e-1130.83tRNA-specific 2-thiouridylase mnmA OS=Francisella ... [more]
MNMA_FRAT12.987e-1130.83tRNA-specific 2-thiouridylase mnmA OS=Francisella ... [more]
MNMA_FRAP22.987e-1129.32tRNA-specific 2-thiouridylase mnmA OS=Francisella ... [more]
MNMA_CHLCV2.987e-1135.16tRNA-specific 2-thiouridylase mnmA OS=Chlamydophil... [more]
MNMA2_GEOKA2.987e-1132.31tRNA-specific 2-thiouridylase mnmA 2 OS=Geobacillu... [more]
MNMA_NITMU3.901e-1131.88tRNA-specific 2-thiouridylase mnmA OS=Nitrosospira... [more]
MNMA_LACC33.901e-1131.30tRNA-specific 2-thiouridylase mnmA OS=Lactobacillu... [more]
MNMA_SHELP5.095e-1133.09tRNA-specific 2-thiouridylase mnmA OS=Shewanella l... [more]
MNMA_GEOTN5.095e-1132.31tRNA-specific 2-thiouridylase mnmA OS=Geobacillus ... [more]
MNMA_PSEHT6.655e-1129.55tRNA-specific 2-thiouridylase mnmA OS=Pseudoaltero... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1CH01ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257827 ID=DY257827; Name=DY257827; organism=Citrus clementina; type=EST; length=716bp
GGATTTTGGTTCTACACAATCGGTCAACGCCAAGGGCTACGTCTTCCTGG
AGGACCCTGGTATGTTGTTGAGAAGGATGTTAAGAACAATGTAGTGTTTG
TGTCGAGAAATTATTATTCGTTTGACAAGAAAAGACGCCTATTTCGTGTT
GGCTCTTTGAAATGGCTCAGTGGATTGCCTCCAGAGGAAATCAGTCGGCT
TCAGTGTAAGGTCAGACATGGTCCTGGTTTCTACAATTGCAATTTGATGA
TTGAACATGTTGAAGATGGTGGTGAGAACATTGCAGTTGTCCAGTTATCA
GAAGACGATCAAGGACTGGCAGCCGGCCAGTTTGCTGCCTTCTACCAGGG
AACAAGATGCATTGGCTCTGGTGTGATTTTGGAATCTTGGGATGATCAGG
GTTTCCCTGTATGTGAAAAAGCTCTCGAGATTGCAAGAATGGAAGATAAA
TCAAAGCTTGGGAAACCCATAAAGATAAAGGTAAAACCGGAGACTCCTGA
GGAGTTTAATTCTAATAAAGGTGTTCAAAGTAGTAGAAACTTGGTTAATG
CTCAAAACAGCATAGCAGAGAAAAGCAATACAACATCTCAAGAAGAAGCA
ATTTCTAGATTCCCGATGAATTGGTTGCAAAAGCTTAGAGAAAAATGGCC
ACGTATATTGTAGCTTCCATCATTTGTAGGCTTCAGCTTTGCTATTTCAT
GAGATGCCTATTCTTT
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