DY257829

Overview
NameDY257829
Unique NameDY257829
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1326
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY257829_ssr144 microsatellite DY257829_ssr144:144..161. BLAST: Citrus ESTs to Prunus persica proteins V1
DY257829_ssr267 microsatellite DY257829_ssr267:267..278. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY257829 vs. ExPASy Swiss-Prot
Match: IF2B_ARCFU (Translation initiation factor 2 subunit beta OS=Archaeoglobus fulgidus GN=eif2b PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.568e-16
Identity = 51/138 (36.96%), Postives = 74/138 (53.62%), Query Frame = 3
Query:  426 YEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPI 839
            YEELL R F  L + +      R R  +    + REG + T+  NF  + KT++R  DH+  +++  LGT+G +D   RLV++G+F     +  +  YV  YV+C  C SPDT   KE R+  LRC  CG+   V  I
Sbjct:    5 YEELLERAFEKLADKD---VVRRERFEIPRVSIQREGAR-TILKNFSQIAKTLNRSEDHLYKYIVKSLGTAGFIDNG-RLVLQGKFTESELQKEVDDYVRLYVLCRECNSPDTEFIKEERVLMLRCLACGAKHPVRNI 137          
BLAST of DY257829 vs. ExPASy Swiss-Prot
Match: IF2B_METVS (Translation initiation factor 2 subunit beta OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=eIF2B PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.048e-16
Identity = 50/142 (35.21%), Postives = 78/142 (54.93%), Query Frame = 3
Query:  420 YEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKA 845
            ++Y+ELL R     R   PE+     R  +       EG + T+  NF D+ K M R       F++ ELGT+G ++G  RL+++G+F  +     ++ YVNEYV+C  C  PDT + KE R+ FL+C  CG   ++ P+K+
Sbjct:    5 FDYKELLKRA----RSQLPEVVFSDVRFEIPSADSFVEGNR-TIIKNFKDIAKFMERDTHEFAKFVMKELGTAGDMEGN-RLILQGKFGWRMVNEKIQNYVNEYVLCPECGKPDTKIIKEGRIHFLKCTACG---AMKPLKS 137          
BLAST of DY257829 vs. ExPASy Swiss-Prot
Match: IF2B_METMP (Translation initiation factor 2 subunit beta OS=Methanococcus maripaludis GN=eif2b PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 2.675e-16
Identity = 49/137 (35.77%), Postives = 74/137 (54.01%), Query Frame = 3
Query:  420 YEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSV 830
            ++Y  LL R     RE  PE      R  +       EG + T+  NF D+ K M R P     +++ ELGT+G ++G  RL+++G+F  +     ++ YVNEYV+C  C  PDT + KE R+ FL+C  CG+ + V
Sbjct:    5 FDYSSLLTRA----REQLPEEVFKDVRFEIPSADSFVEGNR-TIIKNFKDIAKFMERDPQEFAKYVMKELGTAGDMEGV-RLILQGKFGWRMVNEKIQNYVNEYVLCPECGKPDTKIVKEGRIHFLKCTACGAMKPV 135          
BLAST of DY257829 vs. ExPASy Swiss-Prot
Match: IF2B_METM7 (Translation initiation factor 2 subunit beta OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=eIF2B PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 2.675e-16
Identity = 49/137 (35.77%), Postives = 74/137 (54.01%), Query Frame = 3
Query:  420 YEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSV 830
            ++Y  LL R     RE  PE      R  +       EG + T+  NF D+ K M R P     +++ ELGT+G ++G  RL+++G+F  +     ++ YVNEYV+C  C  PDT + KE R+ FL+C  CG+ + V
Sbjct:    5 FDYNSLLTRA----REQLPEEVFKDVRFEIPSADSFVEGNR-TIIKNFKDIAKFMERDPQEFAKYVMKELGTAGDMEGV-RLILQGKFGWRMVNEKIQNYVNEYVLCPECGKPDTKIVKEGRIHFLKCTACGAMKPV 135          
BLAST of DY257829 vs. ExPASy Swiss-Prot
Match: IF2B_METM6 (Translation initiation factor 2 subunit beta OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=eIF2B PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 2.675e-16
Identity = 49/137 (35.77%), Postives = 74/137 (54.01%), Query Frame = 3
Query:  420 YEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSV 830
            ++Y  LL R     RE  PE      R  +       EG + T+  NF D+ K M R P     +++ ELGT+G ++G  RL+++G+F  +     ++ YVNEYV+C  C  PDT + KE R+ FL+C  CG+ + V
Sbjct:    5 FDYNSLLTRA----REQLPEEVFKDVRFEIPSADSFVEGNR-TIIKNFKDIAKFMERDPQEFAKYVMKELGTAGDMEGV-RLILQGKFGWRMVNEKIQNYVNEYVLCPECGKPDTKIVKEGRIHFLKCTACGAMKPV 135          
BLAST of DY257829 vs. ExPASy Swiss-Prot
Match: IF2B_METTH (Translation initiation factor 2 subunit beta OS=Methanobacterium thermoautotrophicum GN=eif2b PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 5.959e-16
Identity = 50/140 (35.71%), Postives = 81/140 (57.86%), Query Frame = 3
Query:  423 EYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIK 842
            +YE+LL R  + L    PE+   +R  V +   V++    +T   NF ++   ++R P H++ FLL ELGT+G+L+G  R +++G+F        +  YVN++VIC  C  PDT + +E R+  L+CE CG   + AP+K
Sbjct:    3 DYEKLLERAIDQLP---PEVFETKRFEVPKAYSVIQGN--RTFIQNFREVADALNRDPQHLLKFLLRELGTAGNLEGG-RAILQGKFTHFLINERIEDYVNKFVICHECNRPDTRIIREGRISLLKCEACG---AKAPLK 133          
BLAST of DY257829 vs. ExPASy Swiss-Prot
Match: IF2B_META3 (Translation initiation factor 2 subunit beta OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=eif2b PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 7.783e-16
Identity = 51/141 (36.17%), Postives = 82/141 (58.16%), Query Frame = 3
Query:  420 YEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIK 842
            Y+Y+ LL R  + L E   E+  D R  V      + EG + T+  NF+D+ K + R+P     ++L ELGT+G ++G  RL+++G+F        ++++V+EYV+C  C  PDT + KE R+ FL+C  CG   ++ PIK
Sbjct:    6 YDYDALLKRAVSQLPE---EVFKDVRFEVPHADSFV-EGNR-TMVKNFVDISKVIRREPQFFAKYVLKELGTAGDVEGP-RLILQGKFGNYIINSKIKKFVDEYVLCPECGKPDTKIIKEGRIHFLKCMACG---AMKPIK 137          
BLAST of DY257829 vs. ExPASy Swiss-Prot
Match: IF2B_SULSO (Translation initiation factor 2 subunit beta OS=Sulfolobus solfataricus GN=eif2b PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.264e-15
Identity = 44/139 (31.65%), Postives = 74/139 (53.24%), Query Frame = 3
Query:  423 EYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPI 839
            EY E+L R+++ L E      G +  T   P  ++      T+  NF + C  + R+    M +LL EL   G++D +  LV++G+F+ +    ++ R++  YV C  CKS DTIL KE + +++ C  CG+   V P+
Sbjct:    6 EYVEMLDRLYSKLPEK-----GRKEGTQSLPNMIILNIGNTTIIRNFAEYCDRIRREDKICMKYLLKELAAPGNVDDKGELVIQGKFSSQVINTLMERFLKAYVECSTCKSLDTILKKEKKSWYIVCLACGAQTPVKPL 139          
BLAST of DY257829 vs. ExPASy Swiss-Prot
Match: IF2B_METM5 (Translation initiation factor 2 subunit beta OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=eIF2B PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.264e-15
Identity = 48/137 (35.04%), Postives = 73/137 (53.28%), Query Frame = 3
Query:  420 YEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSV 830
            ++Y  LL R     RE  PE      R  +       EG + T+  NF D+ K M R       +++ ELGT+G ++G  RL+++G+F  +     ++ YVNEYV+C  C  PDT + KE R+ FL+C  CG+ + V
Sbjct:    5 FDYNSLLTRA----REQLPEEVFKDVRFEIPSADSFVEGNR-TIIKNFKDIAKFMERDAQEFAKYVMKELGTAGDIEGV-RLILQGKFGWRMVNEKIQNYVNEYVLCPECGKPDTKIVKEGRIHFLKCTACGAMKPV 135          
BLAST of DY257829 vs. ExPASy Swiss-Prot
Match: IF2B_THEPD (Translation initiation factor 2 subunit beta OS=Thermofilum pendens (strain Hrk 5) GN=eif2b PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.044e-15
Identity = 47/139 (33.81%), Postives = 78/139 (56.12%), Query Frame = 3
Query:  426 YEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIK 842
            YEELL R +++L        G+R   V+   +V + G KK    NF D+ + ++R+P  ++ F+L E+   G  +     V+ G  + +    +L R+ NEYV C  C++PDTIL KE +L +++C  CG   +V+P+K
Sbjct:    8 YEELLERAYSMLPRRRRRSTGER--FVLPTFEVSKTG-KKVYIHNFKDVAEKLNREPPVLLRFILKEIALPGVYENGTA-VIHGEVSAQTLNKLLERFYNEYVKCPVCEAPDTILVKEKKLMYIKCTACG---AVSPVK 139          
The following BLAST results are available for this feature:
BLAST of DY257829 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
IF2B_ARCFU1.568e-1636.96Translation initiation factor 2 subunit beta OS=Ar... [more]
IF2B_METVS2.048e-1635.21Translation initiation factor 2 subunit beta OS=Me... [more]
IF2B_METMP2.675e-1635.77Translation initiation factor 2 subunit beta OS=Me... [more]
IF2B_METM72.675e-1635.77Translation initiation factor 2 subunit beta OS=Me... [more]
IF2B_METM62.675e-1635.77Translation initiation factor 2 subunit beta OS=Me... [more]
IF2B_METTH5.959e-1635.71Translation initiation factor 2 subunit beta OS=Me... [more]
IF2B_META37.783e-1636.17Translation initiation factor 2 subunit beta OS=Me... [more]
IF2B_SULSO2.264e-1531.65Translation initiation factor 2 subunit beta OS=Su... [more]
IF2B_METM52.264e-1535.04Translation initiation factor 2 subunit beta OS=Me... [more]
IF2B_THEPD5.044e-1533.81Translation initiation factor 2 subunit beta OS=Th... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAB1CH04ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257829 ID=DY257829; Name=DY257829; organism=Citrus clementina; type=EST; length=1326bp
GGAATTCATTTCTTTAGCCGCAGGCCGTCAGCGACGGAAGAGAAGATCTC
AGTTTCGATTCTAGAAACTCGACTATGACGGACGAAAATCAAGTAGATGT
GAAGGACGAGGTGGCAGAACTTGCCCCCTTCGATCCTACTAAAAAGAAGA
AGAAGAAGAAGGTTGTAATACAGGATCCTTCAGATGATTCTGTGGACAAA
CTGGCCGAGATAACTGAAACTTCATCAGTCTCTGAGGGGCTTGAAAGTAC
TTTTACTGGTTTGAAAAAGAAGAAGAAGAAACCAGTAGAAAGCAGTCTAT
TGAACGATGAGATTGGGGATGCAGGAGACGATTTGGATGGTCACGTGGGT
GAGGATGATGAAGCTGATGGAAGTGGTGGTCCACGGCAGCGTTATCCATG
GGAAGGGAGTGATCGCGACTATGAATATGAGGAGCTTCTTGGTAGGGTCT
TTAACATCCTCCGAGAGAATAATCCTGAACTTGCAGGAGATAGGCGTAGA
ACAGTCATGAGACCTCCACAAGTTCTTCGTGAAGGAACAAAGAAAACTGT
TTTTGTCAATTTCATGGATCTCTGCAAGACCATGCATCGGCAGCCAGATC
ATGTCATGACATTTTTGCTTGCTGAACTGGGGACAAGTGGGTCACTGGAC
GGACAGCAAAGACTGGTCGTGAAGGGCCGATTTGCTCCCAAGAATTTTGA
AGGGATACTGCGTCGATATGTCAATGAATATGTCATCTGTCTTGGGTGCA
AAAGTCCTGACACGATACTTTCAAAGGAAAACCGCCTCTTCTTTCTCAGA
TGTGAGAAGTGTGGTTCTGGACGATCAGTTGCTCCCATCAAAGCTGGTTT
CAAGGCACGTGTTGGTCGTAGAAATGCTGGAATGTGATCTTGTGGTCCTG
CTTTTCTCAGCATTTTGAAAAAAAAGAGGTTTGTTTTCATTTTTACCTTA
TGCGTTTTACTACTAATTTGGTTTTGACTAATTGAATTTACCTAGGCCGG
GAAAATATTGGTTATGGATGACCCTTTGATAACTACAATGGATTGATAAA
TCCTTTTTTTCCCTTCCGGGGGGAAGGGCCAATTTTTTGAGCCCTCCCCC
CCAAAAAAAATTTTTTTGGGGACAGAAGGGCCACAAAGGGGGGCAAAAAA
AAAAAAAAAAAAAAGAAGAGGAAAAACCCCGTTTGGGGGCCGCCCCCGCG
CGGCCCCCCCCCACAAACTTAAAAAAACCAAAAAAAAAAAATTAAAGGTG
GGGGGGGGGCCGCCAAAATTTTTGGCGGGGTCCCTCTTGGGTGGGCGGAA
CTTTTTCTCCCCCCCTTCCTCATAAG
back to top