DY257830

Overview
NameDY257830
Unique NameDY257830
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1120
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12725 contig Ccv1_Contig12725:169..1287. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257830 vs. ExPASy Swiss-Prot
Match: TIP12_ORYSJ (Probable aquaporin TIP1-2 OS=Oryza sativa subsp. japonica GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.973e-30
Identity = 88/241 (36.51%), Postives = 127/241 (52.70%), Query Frame = 3
Query:  213 PGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTV--GIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGG---GANMLSKGYSKGDGLGAEIVGTFVLVYTVF-SATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNKDQAWDDPWIFWAGPFIGATLAALYHQIV 917
            PGELS     +A +AEF++  +F++    + M  SK      T   G+   + A    +F  V   A ISGGH+NPAVTFG F+   +SL  AV Y + Q LG++    ++K          GG   GA  LS G    + +  EIV TF LVYTV+ +A D K+      + ++AP+ IGF V    LA     G  +NP+ S G A++      WD+ W++W GPF+GA +AAL + I+
Sbjct:   11 PGELSHPDTAKAAVAEFISMLIFVFAGSGSGMAFSKLTDGGGTTPSGLIAASLAHALALFVAVAVGANISGGHVNPAVTFGAFVGGNISLVKAVVYWVAQLLGSVVACLLLK-------IATGGAAVGAFSLSAGVGAWNAVVFEIVMTFGLVYTVYATAVDPKK----GDLGVIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVTG---VWDNHWVYWLGPFVGAAIAALIYDII 237          
BLAST of DY257830 vs. ExPASy Swiss-Prot
Match: AQP5_SHEEP (Aquaporin-5 OS=Ovis aries GN=AQP5 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.973e-30
Identity = 82/232 (35.34%), Postives = 130/232 (56.03%), Query Frame = 3
Query:  219 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGG-GANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAP-LPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNKDQAWDDPWIFWAGPFIGATLAALYH 908
            E+ S +F +A  AEF+AT +F++  + + +     K   +   +  I+ AFG  I  +      +SGGH+NPA+T  L +  ++SL  AVFY++ Q +GAI GAA++ G   + Y        N L+   + G  + AE++ TF L   VFS+TD++R +     P+ +P L IG +V L HL  I  TG  +NP+RS G A+I ++  +    W+FW GP +GA  AA+ +
Sbjct:    4 EVCSAAFLKAVFAEFLATLIFVFFGLGSAL-----KWPSAMPSVLQISLAFGLAIGTMAQALGPVSGGHMNPAITLALLVGNQISLLRAVFYLVAQLVGAIAGAAILYGL--APYNARSNLAVNALNNNTTAGQAVVAEMILTFQLALCVFSSTDSRRTS-----PVGSPALSIGLSVTLGHLVGIYFTGCSMNPARSFGPAVIMSRFSS--AHWVFWVGPIVGAATAAIIY 221          
BLAST of DY257830 vs. ExPASy Swiss-Prot
Match: AQP5_MOUSE (Aquaporin-5 OS=Mus musculus GN=Aqp5 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.973e-30
Identity = 84/237 (35.44%), Postives = 129/237 (54.43%), Query Frame = 3
Query:  219 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGA------NMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAP-LPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNKDQAWDDPWIFWAGPFIGATLAALYH 908
            E+ S +F++A  AEF+AT +F++  + + +     K   +   I  I+ AFG  I  L      +SGGHINPA+T  L +  ++SL  A+FY+  Q +GAI GA ++       Y +  G A      N LS   + G  +  E++ TF L   +FS+TD++R +     P+ +P L IG +V L HL  I  TG  +NP+RS G A++ N+       W+FW GP +GA LAA+ +
Sbjct:    4 EVCSVAFFKAVFAEFLATLIFVFFGLGSAL-----KWPSALPTILQISIAFGLAIGTLAQALGPVSGGHINPAITLALLIGNQISLLRAIFYVAAQLVGAIAGAGIL-------YWLAPGNARGNLAVNALSNNTTPGKAVVVELILTFQLALCIFSSTDSRRTS-----PVGSPALSIGLSVTLGHLVGIYFTGCSMNPARSFGPAVVMNRFS--PSHWVFWVGPIVGAVLAAILY 221          
BLAST of DY257830 vs. ExPASy Swiss-Prot
Match: TIP1_MEDTR (Probable aquaporin TIP-type OS=Medicago truncatula GN=AQP1 PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 4.394e-30
Identity = 82/238 (34.45%), Postives = 129/238 (54.20%), Query Frame = 3
Query:  213 PGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSK--SKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVF-SATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNKDQAWDDPWIFWAGPFIGATLAALYHQIV 917
            P E +     +AG+AEF++TF+F++    + +  +K  +    +  G+   + A    +F  V   A ISGGH+NPAVTFG F+   ++L   + Y+I Q LG+I  +A++     S     G     LS+G   G  L  EIV TF LVYTV+ +A D K+     ++ I+AP+ IGF V    L     TG  +NP+ S G A++     +W + W++WAGP IG  +A L ++++
Sbjct:   11 PQEATHPDTLKAGLAEFISTFIFVFAGSGSGIAYNKLTNDGAATPAGLISASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLLRGIVYIIAQLLGSIVASALLVFVTASSVPAFG-----LSEGVGVGPALVLEIVMTFGLVYTVYATAVDPKK----GNIGIIAPIAIGFIVGANILVGGAFTGASMNPAVSFGPAVV---SWSWSNHWVYWAGPLIGGGIAGLVYEVL 236          
BLAST of DY257830 vs. ExPASy Swiss-Prot
Match: AQP5_RAT (Aquaporin-5 OS=Rattus norvegicus GN=Aqp5 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 4.394e-30
Identity = 82/232 (35.34%), Postives = 128/232 (55.17%), Query Frame = 3
Query:  219 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGG-GANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAP-LPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNKDQAWDDPWIFWAGPFIGATLAALYH 908
            E+ S +F++A  AEF+AT +F++  + + +     K   +   I  I+ AFG  I  L      +SGGHINPA+T  L +  ++SL  AVFY+  Q +GAI GA ++  +  +     G    N L+   + G  +  E++ TF L   +FS+TD++R +     P+ +P L IG +V L HL  I  TG  +NP+RS G A++ N+       W+FW GP +GA LAA+ +
Sbjct:    4 EVCSLAFFKAVFAEFLATLIFVFFGLGSAL-----KWPSALPTILQISIAFGLAIGTLAQALGPVSGGHINPAITLALLIGNQISLLRAVFYVAAQLVGAIAGAGIL--YWLAPLNARGNLAVNALNNNTTPGKAMVVELILTFQLALCIFSSTDSRRTS-----PVGSPALSIGLSVTLGHLVGIYFTGCSMNPARSFGPAVVMNRFS--PSHWVFWVGPIVGAMLAAILY 221          
BLAST of DY257830 vs. ExPASy Swiss-Prot
Match: AQP_HAEIX (Aquaporin OS=Haematobia irritans exigua PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 5.739e-30
Identity = 79/228 (34.65%), Postives = 119/228 (52.19%), Query Frame = 3
Query:  240 YRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNKDQAWDDPWIFWAGPFIGATLAALYHQIVIR 923
            +R  +AE + TF  + I V +  G S+         I  IA+ FG  +  L      ISG HINPAVT G  +  ++S+  +V Y+ +QC+GAI GAAV+K         L  G +  S   + G  +  E + TF+LV  V   +D  R    + +   APL +G ++   HL  I +TG  +NP+RS G A++ N    W D W++W GP +GA +AAL ++ V +
Sbjct:   23 WRQLMAELIGTFFLVVIGVGSCTGGSEWSPS-----IPQIAFTFGLTVATLAQAIGHISGCHINPAVTVGFLIVGEMSIIKSVLYIAVQCVGAIAGAAVIKVGVSEAVSGLDLGVSSFSSTLTVGQAVLIEALITFILVVVVKGVSDPGR----TDIKGSAPLAVGLSIAAGHLCAIKLTGASMNPARSFGPAVVQN---MWIDHWVYWVGPIVGAIVAALLYKFVFK 238          
BLAST of DY257830 vs. ExPASy Swiss-Prot
Match: AQP5_HUMAN (Aquaporin-5 OS=Homo sapiens GN=AQP5 PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.279e-29
Identity = 82/232 (35.34%), Postives = 127/232 (54.74%), Query Frame = 3
Query:  219 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGG-GANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAP-LPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNKDQAWDDPWIFWAGPFIGATLAALYH 908
            E+ S +F +A  AEF+AT +F++  + + +     K   +   I  IA AFG  I  L      +SGGHINPA+T  L +  ++SL  A FY+  Q +GAI GA ++ G   +     G    N L+   ++G  +  E++ TF L   +F++TD++R +     P+ +P L IG +V L HL  I  TG  +NP+RS G A++ N+       W+FW GP +GA LAA+ +
Sbjct:    4 EVCSVAFLKAVFAEFLATLIFVFFGLGSAL-----KWPSALPTILQIALAFGLAIGTLAQALGPVSGGHINPAITLALLVGNQISLLRAFFYVAAQLVGAIAGAGILYGV--APLNARGNLAVNALNNNTTQGQAMVVELILTFQLALCIFASTDSRRTS-----PVGSPALSIGLSVTLGHLVGIYFTGCSMNPARSFGPAVVMNRFS--PAHWVFWVGPIVGAVLAAILY 221          
BLAST of DY257830 vs. ExPASy Swiss-Prot
Match: AQP2_SHEEP (Aquaporin-2 OS=Ovis aries GN=AQP2 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 2.181e-29
Identity = 85/235 (36.17%), Postives = 126/235 (53.62%), Query Frame = 3
Query:  219 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGG-GANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNKDQAWDDPWIFWAGPFIGATLAALYHQIVI 920
            EL S +F RA +AEF+AT LF++  + + +   ++        +  IA AFG  I  LV     +SG HINPAVT    +   +S   AVFY+  Q LGA+ GAA++   + +   + G    N L+   + G  +  E+  T  LV  +F +TD +R  +  H      L IGF+V L HL  I  TG  +NP+RSL  A++  K   +DD W+FW GP +GA +A+L +  V+
Sbjct:    3 ELRSIAFSRAVLAEFLATLLFVFFGLGSALNWPQALPS-----VLQIAMAFGLAIGTLVQALGHVSGAHINPAVTVACLVGCHVSFLRAVFYVAAQLLGAVAGAALL--HEITPPAIRGDLAVNALNNNSTAGQAVTVELFLTLQLVLCIFPSTDKRRGKQLGH----PALSIGFSVALGHLLGIHYTGCSMNPARSLAPAIVTGK---FDDHWVFWIGPLVGAIVASLLYNYVL 223          
BLAST of DY257830 vs. ExPASy Swiss-Prot
Match: AQP2_HUMAN (Aquaporin-2 OS=Homo sapiens GN=AQP2 PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 3.720e-29
Identity = 86/235 (36.60%), Postives = 125/235 (53.19%), Query Frame = 3
Query:  219 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGG-GANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNKDQAWDDPWIFWAGPFIGATLAALYHQIVI 920
            EL S +F RA  AEF+AT LF++  + + +   ++        +  IA AFG  I  LV     ISG HINPAVT    +   +S+  A FY+  Q LGA+ GAA++   + +  ++ G    N LS   + G  +  E+  T  LV  +F++TD +R       P    L IGF+V L HL  I  TG  +NP+RSL  A++  K   +DD W+FW GP +GA L +L +  V+
Sbjct:    3 ELRSIAFSRAVFAEFLATLLFVFFGLGSALNWPQALPS-----VLQIAMAFGLGIGTLVQALGHISGAHINPAVTVACLVGCHVSVLRAAFYVAAQLLGAVAGAALL--HEITPADIRGDLAVNALSNSTTAGQAVTVELFLTLQLVLCIFASTDERRGEN----PGTPALSIGFSVALGHLLGIHYTGCSMNPARSLAPAVVTGK---FDDHWVFWIGPLVGAILGSLLYNYVL 223          
BLAST of DY257830 vs. ExPASy Swiss-Prot
Match: TIP12_MAIZE (Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 8.287e-29
Identity = 84/241 (34.85%), Postives = 126/241 (52.28%), Query Frame = 3
Query:  213 PGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSK--SKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGG---GANMLSKGYSKGDGLGAEIVGTFVLVYTVF-SATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNKDQAWDDPWIFWAGPFIGATLAALYHQIV 917
            PGELS     +A +AEF++T +F++    + M  SK       +  G+   + A    +F  V   A ISGGH+NPAVTFG F+   +SL  A+ Y + Q LG++    ++K          GG   GA  LS G    + +  E+V TF LVYTV+ +A D K+      + ++AP+ IGF V    LA     G  +NP+ S G A++      W++ W++W GP  GA +AAL + I+
Sbjct:   11 PGELSHPDTAKAAVAEFISTLIFVFAGSGSGMAFSKLTDGGAATPAGLIAASLAHALALFVAVSVGANISGGHVNPAVTFGAFVGGNISLLKALVYWVAQLLGSVVACLLLK-------IATGGAALGAFSLSAGVGAMNAVVLEMVMTFGLVYTVYATAVDPKK----GDLGVIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVTG---VWENHWVYWVGPLAGAAIAALVYDII 237          
The following BLAST results are available for this feature:
BLAST of DY257830 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 201
Match NameE-valueIdentityDescription
TIP12_ORYSJ1.973e-3036.51Probable aquaporin TIP1-2 OS=Oryza sativa subsp. j... [more]
AQP5_SHEEP1.973e-3035.34Aquaporin-5 OS=Ovis aries GN=AQP5 PE=2 SV=1[more]
AQP5_MOUSE1.973e-3035.44Aquaporin-5 OS=Mus musculus GN=Aqp5 PE=2 SV=1[more]
TIP1_MEDTR4.394e-3034.45Probable aquaporin TIP-type OS=Medicago truncatula... [more]
AQP5_RAT4.394e-3035.34Aquaporin-5 OS=Rattus norvegicus GN=Aqp5 PE=2 SV=1[more]
AQP_HAEIX5.739e-3034.65Aquaporin OS=Haematobia irritans exigua PE=2 SV=1[more]
AQP5_HUMAN1.279e-2935.34Aquaporin-5 OS=Homo sapiens GN=AQP5 PE=1 SV=1[more]
AQP2_SHEEP2.181e-2936.17Aquaporin-2 OS=Ovis aries GN=AQP2 PE=2 SV=1[more]
AQP2_HUMAN3.720e-2936.60Aquaporin-2 OS=Homo sapiens GN=AQP2 PE=1 SV=1[more]
TIP12_MAIZE8.287e-2934.85Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1CH07ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257830 ID=DY257830; Name=DY257830; organism=Citrus clementina; type=EST; length=1120bp
GGAGCCCGTTGTGCCATTTATTTATTCTATTCACTCCCAAGAAACTTGAA
CCTATCTTGTCTATTAATTTTCACAAGAACATAATGGAGGGCAAAGAAGA
GGATGTAAGAGTGGGAGCAAATAGGTATCGAGAGAGTCAACCTATTGGAA
CCGCGGCTCAAACTCAGGATGTGAAGGATTACACGGAGCCACCTCCGGCG
CCGCTCTTCGAGCCCGGCGAATTATCGTCGTGGTCCTTTTACAGGGCTGG
CATTGCGGAGTTTGTGGCCACGTTCTTGTTTCTTTACATCACTGTTCTAA
CAGTGATGGGCGTGTCCAAATCCAAAAGCAAATGTTCCACTGTGGGAATC
CAGGGCATCGCTTGGGCTTTTGGCGGCATGATCTTCGCTCTAGTCTACTG
CACTGCTGGCATTTCAGGGGGTCACATTAACCCAGCGGTGACATTCGGGC
TGTTCTTGGCCCGAAAGCTGTCGCTTACCACGGCAGTTTTTTACATGATA
ATGCAGTGTTTAGGGGCCATATGCGGTGCCGCCGTTGTAAAGGGCTTTCA
GAAAAGCCAATATGAAATGCTAGGCGGCGGTGCCAACATGCTCAGCAAAG
GCTACAGCAAGGGAGATGGCCTTGGAGCCGAGATTGTTGGTACCTTTGTT
CTTGTTTACACTGTCTTCTCGGCCACTGATGCCAAGCGCAATGCCCGCGA
TTCTCATGTTCCTATATTGGCACCCCTGCCCATAGGATTTGCTGTGTTTT
TGGTGCACTTGGCAACAATTCCTATCACAGGAACAGGCATTAACCCATCT
AGGAGTCTTGGCGCAGCTCTGATATACAACAAGGACCAAGCCTGGGATGA
TCCTTGGATTTTCTGGGCAGGACCATTCATTGGAGCAACGCTTGCCGCTT
TATATCATCAAATTGTGATCAGGGCCATCCCAATTCAGTCCAAATGGATA
GTCATTAATTTCAATCCGTTCAATTAAAACCCCTGTATGGAAGTTAAATT
GCCCCCTGTCCCGGGGGTTTGCTTTTAATTTTTCCCCGGGATAGGGACCA
CCCTTTTGGGGGTTTGGGCCTTTTAAATTGTGGTTGAGACCTTCCATGTT
TCAGGGGCCCATTTCCCTTT
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