DY257830

Overview
NameDY257830
Unique NameDY257830
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1120
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12725 contig Ccv1_Contig12725:169..1287. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257830 vs. ExPASy Swiss-Prot
Match: TIP_ANTMA (Probable aquaporin TIP-type OS=Antirrhinum majus GN=DIP PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.082e-28
Identity = 84/245 (34.29%), Postives = 131/245 (53.47%), Query Frame = 3
Query:  216 GELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSK--SKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKG----DGLGAEIVGTFVLVYTVF-SATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNKDQAWDDPWIFWAGPFIGATLAA-LYHQIVIRA 926
            G+  S +  +A +AEF+AT LF++  V + +  +K  S +     G+  +A A    +F  V   A +SGGH+NPAVT GL +   +++ T +FY I QCLG+     ++K         +  G ++ + G + G     G+  EI+ TF LVYTV+ +A D K+ +    + ++AP+ IGF V    LA  P +G  +NP+RS G A+       +   WI+WAGP IG  LA  +Y  + I A
Sbjct:   10 GDSFSVASIKAYVAEFIATLLFVFAGVGSAIAYNKLTSDAALDPAGLVAVAVAHAFALFVGVSMAANVSGGHLNPAVTLGLAVGGNITILTGLFYWIAQCLGSTVACLLLK--------FVTNGLSVPTHGVAAGMDAIQGVVMEIIITFALVYTVYATAADPKKGS----LGVIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGD---FSQNWIYWAGPLIGGALAGFIYGDVFITA 239          
BLAST of DY257830 vs. ExPASy Swiss-Prot
Match: TIP23_ARATH (Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3 PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.846e-28
Identity = 84/234 (35.90%), Postives = 122/234 (52.14%), Query Frame = 3
Query:  216 GELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSK--SKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVF-SATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNKDQAWDDPWIFWAGPFIGATLAALYH 908
            G+  S S  +A ++EF+AT LF++  V + +  +K  S       G+  IA A    +F  V   A ISGGH+NPAVT GL +   ++L T  FY I QCLG+I    ++      +     G    +S G    +G+  EIV TF LVYTV+ +A D K+ +    +  +AP+ IGF V    LA  P +G  +NP+RS G A++          WI+W GP +G  LA L +
Sbjct:   10 GDSFSVSSLKAYLSEFIATLLFVFAGVGSAVAFAKLTSDGALDPAGLVAIAIAHAFALFVGVSIAANISGGHLNPAVTLGLAIGGNITLITGFFYWIAQCLGSIVACLLLVFVTNGKSVPTHG----VSAGLGAVEGVVMEIVVTFALVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGD---LSQIWIYWVGPLVGGALAGLIY 232          
BLAST of DY257830 vs. ExPASy Swiss-Prot
Match: AQP2_BOVIN (Aquaporin-2 OS=Bos taurus GN=AQP2 PE=2 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 1.846e-28
Identity = 84/235 (35.74%), Postives = 125/235 (53.19%), Query Frame = 3
Query:  219 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGG-GANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNKDQAWDDPWIFWAGPFIGATLAALYHQIVI 920
            EL S +F RA +AEF+AT LF++  + + +   ++        +  IA AFG  I  LV     +SG HINPAVT    +   +S   AVFY+  Q LGA+ GAA++   + +   + G    N L+   + G  +  E+  T  LV  +F++TD +R            L IGF+V L HL  I  TG  +NP+RSL  A++  K   +DD W+FW GP +GA +A+L +  V+
Sbjct:    3 ELRSIAFSRAVLAEFLATLLFVFFGLGSALNWPQALPS-----VLQIAMAFGLAIGTLVQALGHVSGAHINPAVTVACLVGCHVSFLRAVFYVAAQLLGAVAGAALL--HEITPPAIRGDLAVNALNNNSTAGQAVTVELFLTLQLVLCIFASTDERRGDNVG----TPALSIGFSVALGHLLGIHYTGCSMNPARSLAPAIVTGK---FDDHWVFWIGPLVGAIVASLLYNYVL 223          
BLAST of DY257830 vs. ExPASy Swiss-Prot
Match: TIP22_ORYSJ (Probable aquaporin TIP2-2 OS=Oryza sativa subsp. japonica GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 2.411e-28
Identity = 83/231 (35.93%), Postives = 126/231 (54.55%), Query Frame = 3
Query:  243 RAGIAEFVATFLFLYITVLTVMGVSK--SKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVK---GFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVF-SATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNKDQAWDDPWIFWAGPFIGATLAALYHQIV 917
            +A +AEF++T +F++  V + +  +K    +     G+  +A   G  +F  V   A ISGGH+NPAVTFGL L  ++++ T VFY I Q LGAI GA +V+   G     + + G GA          +G+  EI+ TF LVYTV+ +A D K+ +    +  +AP+ IGF V    L   P +G  +NP+RS G A+       + + WI+W GP +G  LA L ++ V
Sbjct:   20 KAYVAEFISTLVFVFAGVGSAIAYTKLTGGAPLDPAGLVAVAVCHGFGLFVAVAIGANISGGHVNPAVTFGLALGGQITILTGVFYWIAQLLGAIVGAVLVQFCTGVATPTHGLSGVGA---------FEGVVMEIIVTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILVAGPFSGGSMNPARSFGPAVASGD---YTNIWIYWVGPLVGGGLAGLVYRYV 234          
BLAST of DY257830 vs. ExPASy Swiss-Prot
Match: TIP31_ARATH (Aquaporin TIP3-1 OS=Arabidopsis thaliana GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 3.149e-28
Identity = 80/234 (34.19%), Postives = 124/234 (52.99%), Query Frame = 3
Query:  243 RAGIAEFVATFLFLYITVLTVMGVSK-------SKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFSA-TDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNKDQAWDDPWIFWAGPFIGATLAALYHQIVI 920
            RA +AEF++TF+F++    +++ + K            +  G+  +A A    +FA V     +SGGH+NPAVTFG  +  +++   A++Y I Q LGAI    +++        +       L+ G    +GL  EI+ TF LVY V+S   D KR +    + I+APL IG  V    L   P +G  +NP+R+ G AL+      W D WI+W GPFIG+ LAAL ++ ++
Sbjct:   24 RATLAEFLSTFVFVFAAEGSILSLDKLYWEHAAHAGTNTPGGLILVALAHAFALFAAVSAAINVSGGHVNPAVTFGALVGGRVTAIRAIYYWIAQLLGAILACLLLRLTTNGMRPV----GFRLASGVGAVNGLVLEIILTFGLVYVVYSTLIDPKRGS----LGIIAPLAIGLIVGANILVGGPFSGASMNPARAFGPALV---GWRWHDHWIYWVGPFIGSALAALIYEYMV 246          
BLAST of DY257830 vs. ExPASy Swiss-Prot
Match: TIP31_MAIZE (Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 4.113e-28
Identity = 81/234 (34.62%), Postives = 121/234 (51.71%), Query Frame = 3
Query:  243 RAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVG-IQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLG------AEIVGTFVLVYTVFSAT-DAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNKDQAWDDPWIFWAGPFIGATLAALYHQIVI 920
            RA I+EF+AT +F++    +V+ + K     ST G +  +A A    +   V     ISGGH+NPAVTFG  +  ++SL  AV Y + Q LGA+    +++        +  GG  M   G++   G+G       E V TF L+Y  ++   D KR     HV  +APL +GF +    LA  P  G G+NP+R  G AL+      W   W++W GPF+GA LA L ++ ++
Sbjct:   26 RAAISEFIATAIFVFAAEGSVLSLGKMYHDMSTAGGLVAVALAHALALAVAVAVAVNISGGHVNPAVTFGALVGGRVSLVRAVLYWVAQLLGAVAATLLLR--------LATGG--MRPPGFALASGVGDWHAVLLEAVMTFGLMYAYYATVIDPKR----GHVGTIAPLAVGFLLGANVLAGGPFDGAGMNPARVFGPALV---GWRWRHHWVYWLGPFLGAGLAGLVYEYLV 242          
BLAST of DY257830 vs. ExPASy Swiss-Prot
Match: AQP2_MOUSE (Aquaporin-2 OS=Mus musculus GN=Aqp2 PE=2 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 4.113e-28
Identity = 83/235 (35.32%), Postives = 124/235 (52.77%), Query Frame = 3
Query:  219 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGG-GANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNKDQAWDDPWIFWAGPFIGATLAALYHQIVI 920
            EL S +F RA +AEF+AT LF++  + + +  + S        +  IA AFG  I  LV     +SG HINPAVT    +   +S   A FY+  Q LGA+ GAA++   + +  E+ G    N L    + G  +  E+  T  LV  +F++TD +R+           L IGF+V L HL  I  TG  +NP+RSL  A++  K   +DD W+FW GP +GA + +L +  ++
Sbjct:    3 ELRSIAFSRAVLAEFLATLLFVFFGLGSALQWASSPPS-----VLQIAVAFGLGIGTLVQALGHVSGAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAAIL--HEITPVEIRGDLAVNALHNNATAGQAVTVELFLTMQLVLCIFASTDERRSDNLGS----PALSIGFSVTLGHLLGIYFTGCSMNPARSLAPAVVTGK---FDDHWVFWIGPLVGAVIGSLLYNYLL 223          
BLAST of DY257830 vs. ExPASy Swiss-Prot
Match: TIP32_ARATH (Probable aquaporin TIP3-2 OS=Arabidopsis thaliana GN=TIP3-2 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 7.016e-28
Identity = 80/238 (33.61%), Postives = 126/238 (52.94%), Query Frame = 3
Query:  243 RAGIAEFVATFLFLYITVLTVMGVSK-------SKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVK----GFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFS-ATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNKDQAWDDPWIFWAGPFIGATLAALYHQIVI 920
            RA +AEF++TF+F++    +++ + K            +  G+  +A A    +FA V     +SGGH+NPAVTF   +  ++S+  A++Y + Q +GAI    +++    G +   +         ++ G S+  GL  EI+ TF LVY V+S A D KR +    + I+APL IG  V    L   P  G  +NP+R+ G AL+      W + WI+W GPFIG  LAAL ++ +I
Sbjct:   24 RATLAEFLSTFVFVFAGEGSILALDKLYWDTAAHTGTNTPGGLVLVALAHALALFAAVSAAINVSGGHVNPAVTFAALIGGRISVIRAIYYWVAQLIGAILACLLLRLATNGLRPVGFH--------VASGVSELHGLLMEIILTFALVYVVYSTAIDPKRGS----IGIIAPLAIGLIVGANILVGGPFDGASMNPARAFGPALV---GWRWSNHWIYWVGPFIGGALAALIYEYMI 246          
BLAST of DY257830 vs. ExPASy Swiss-Prot
Match: MIP_RANPI (Lens fiber major intrinsic protein OS=Rana pipiens PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 7.016e-28
Identity = 82/235 (34.89%), Postives = 120/235 (51.06%), Query Frame = 3
Query:  219 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGA-NMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNKDQAWDDPWIFWAGPFIGATLAALYHQIVI 920
            E  S+SF+RA  AEF  T  +++      +G S  K       +  IA AFG ++  +V     +SG HINPAVTF   +  ++SL  A+FY+  Q LGA+ GAAV+ G   +   + G  A N L  G S G     EI  T   V  +F+  D +RN R   V     L IGF++ L HL  +  TG  +NP+RS   A++    + + + W++W GP IG  L  L +  ++
Sbjct:    3 EFRSFSFWRAVFAEFFGTMFYVFFG----LGASL-KWAAGPANVLVIALAFGLVLATMVQSIGHVSGAHINPAVTFAFLIGSQMSLFRAIFYIAAQLLGAVAGAAVLYGVTPA--AIRGNLALNTLHPGVSLGQATTVEIFLTLQFVLCIFATYDERRNGRLGSV----SLAIGFSLTLGHLFGLYYTGASMNPARSFAPAVL---TRNFTNHWVYWVGPIIGGALGGLVYDFIL 223          
BLAST of DY257830 vs. ExPASy Swiss-Prot
Match: TIP22_ARATH (Probable aquaporin TIP2-2 OS=Arabidopsis thaliana GN=TIP2-2 PE=1 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 9.163e-28
Identity = 80/234 (34.19%), Postives = 124/234 (52.99%), Query Frame = 3
Query:  216 GELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSK--SKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVF-SATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNKDQAWDDPWIFWAGPFIGATLAALYH 908
            G+  S +  +A ++EF+AT LF++  V + +  +K  S +     G+  +A A    +F  V   A ISGGH+NPAVT GL +   +++ T  FY I QCLG+I    ++      +     G    ++ G    +G+  EIV TF LVYTV+ +A D K+ +    +  +AP+ IGF V    LA  P +G  +NP+RS G A++      +   WI+W GP +G  LA L +
Sbjct:   10 GDSFSVASLKAYLSEFIATLLFVFAGVGSALAFAKLTSDAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAVGGNITVITGFFYWIAQCLGSIVACLLLVFVTNGESVPTHG----VAAGLGAIEGVVMEIVVTFALVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGD---FSQIWIYWVGPLVGGALAGLIY 232          
The following BLAST results are available for this feature:
BLAST of DY257830 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 201
Match NameE-valueIdentityDescription
TIP_ANTMA1.082e-2834.29Probable aquaporin TIP-type OS=Antirrhinum majus G... [more]
TIP23_ARATH1.846e-2835.90Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3... [more]
AQP2_BOVIN1.846e-2835.74Aquaporin-2 OS=Bos taurus GN=AQP2 PE=2 SV=2[more]
TIP22_ORYSJ2.411e-2835.93Probable aquaporin TIP2-2 OS=Oryza sativa subsp. j... [more]
TIP31_ARATH3.149e-2834.19Aquaporin TIP3-1 OS=Arabidopsis thaliana GN=TIP3-1... [more]
TIP31_MAIZE4.113e-2834.62Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1[more]
AQP2_MOUSE4.113e-2835.32Aquaporin-2 OS=Mus musculus GN=Aqp2 PE=2 SV=2[more]
TIP32_ARATH7.016e-2833.61Probable aquaporin TIP3-2 OS=Arabidopsis thaliana ... [more]
MIP_RANPI7.016e-2834.89Lens fiber major intrinsic protein OS=Rana pipiens... [more]
TIP22_ARATH9.163e-2834.19Probable aquaporin TIP2-2 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1CH07ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257830 ID=DY257830; Name=DY257830; organism=Citrus clementina; type=EST; length=1120bp
GGAGCCCGTTGTGCCATTTATTTATTCTATTCACTCCCAAGAAACTTGAA
CCTATCTTGTCTATTAATTTTCACAAGAACATAATGGAGGGCAAAGAAGA
GGATGTAAGAGTGGGAGCAAATAGGTATCGAGAGAGTCAACCTATTGGAA
CCGCGGCTCAAACTCAGGATGTGAAGGATTACACGGAGCCACCTCCGGCG
CCGCTCTTCGAGCCCGGCGAATTATCGTCGTGGTCCTTTTACAGGGCTGG
CATTGCGGAGTTTGTGGCCACGTTCTTGTTTCTTTACATCACTGTTCTAA
CAGTGATGGGCGTGTCCAAATCCAAAAGCAAATGTTCCACTGTGGGAATC
CAGGGCATCGCTTGGGCTTTTGGCGGCATGATCTTCGCTCTAGTCTACTG
CACTGCTGGCATTTCAGGGGGTCACATTAACCCAGCGGTGACATTCGGGC
TGTTCTTGGCCCGAAAGCTGTCGCTTACCACGGCAGTTTTTTACATGATA
ATGCAGTGTTTAGGGGCCATATGCGGTGCCGCCGTTGTAAAGGGCTTTCA
GAAAAGCCAATATGAAATGCTAGGCGGCGGTGCCAACATGCTCAGCAAAG
GCTACAGCAAGGGAGATGGCCTTGGAGCCGAGATTGTTGGTACCTTTGTT
CTTGTTTACACTGTCTTCTCGGCCACTGATGCCAAGCGCAATGCCCGCGA
TTCTCATGTTCCTATATTGGCACCCCTGCCCATAGGATTTGCTGTGTTTT
TGGTGCACTTGGCAACAATTCCTATCACAGGAACAGGCATTAACCCATCT
AGGAGTCTTGGCGCAGCTCTGATATACAACAAGGACCAAGCCTGGGATGA
TCCTTGGATTTTCTGGGCAGGACCATTCATTGGAGCAACGCTTGCCGCTT
TATATCATCAAATTGTGATCAGGGCCATCCCAATTCAGTCCAAATGGATA
GTCATTAATTTCAATCCGTTCAATTAAAACCCCTGTATGGAAGTTAAATT
GCCCCCTGTCCCGGGGGTTTGCTTTTAATTTTTCCCCGGGATAGGGACCA
CCCTTTTGGGGGTTTGGGCCTTTTAAATTGTGGTTGAGACCTTCCATGTT
TCAGGGGCCCATTTCCCTTT
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