DY257830

Overview
NameDY257830
Unique NameDY257830
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1120
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12725 contig Ccv1_Contig12725:169..1287. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257830 vs. ExPASy Swiss-Prot
Match: TIP21_ARATH (Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1 PE=1 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 9.163e-28
Identity = 83/228 (36.40%), Postives = 124/228 (54.39%), Query Frame = 3
Query:  243 RAGIAEFVATFLFLYITVLTVMGVSK--SKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGA---NMLSKGYSKGDGLGAEIVGTFVLVYTVF-SATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNKDQAWDDPWIFWAGPFIGATLAALYH 908
            RA +AEF++T LF++  V + +  +K  S +   T G+  IA   G  +F  V   A ISGGH+NPAVTFGL +  ++++ T VFY I Q LG+     ++K        + GG A   + ++ G    +G+  EI+ TF LVYTV+ +A D K+ +    +  +APL IG  V    LA  P +G  +NP+RS G A+       +   W++W GP IG  LA L +
Sbjct:   19 RAYLAEFISTLLFVFAGVGSAIAYAKLTSDAALDTPGLVAIAVCHGFALFVAVAIGANISGGHVNPAVTFGLAVGGQITVITGVFYWIAQLLGSTAACFLLK-------YVTGGLAVPTHSVAAGLGSIEGVVMEIIITFALVYTVYATAADPKKGS----LGTIAPLAIGLIVGANILAAGPFSGGSMNPARSFGPAVAAGD---FSGHWVYWVGPLIGGGLAGLIY 232          
BLAST of DY257830 vs. ExPASy Swiss-Prot
Match: TIP1_MEDSA (Probable aquaporin TIP-type OS=Medicago sativa GN=MCP1 PE=2 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 9.163e-28
Identity = 81/238 (34.03%), Postives = 128/238 (53.78%), Query Frame = 3
Query:  213 PGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSK--SKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFS-ATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNKDQAWDDPWIFWAGPFIGATLAALYHQIV 917
            P E +     +AG+AEF++TF+F++    + +  +K  +    +  G+   + A    +F  V   A ISGGH+NPAV FG F+   ++L   + Y+I Q LG+I  +A++     S     G     LS+G   G  L  EIV TF LVYTV++ A D K+     ++ I+AP+ IGF V    L     TG  +NP+ S G A++     +W + W++WAGP IG  +A L ++++
Sbjct:   11 PQEATHPDTLKAGLAEFISTFIFVFAGSGSGIAYNKLTNDGAATPAGLISASIAHAFALFVAVSVGANISGGHVNPAV-FGAFVGGNITLLRGIVYIIAQLLGSIVCSALLVFVTASSVPAFG-----LSEGVGVGPALVLEIVMTFGLVYTVYATAVDPKKG----NIGIIAPIAIGFIVGANILVGGAFTGASMNPAVSFGPAVV---SWSWSNHWVYWAGPLIGGGIAGLVYEVL 235          
BLAST of DY257830 vs. ExPASy Swiss-Prot
Match: AQP2_RAT (Aquaporin-2 OS=Rattus norvegicus GN=Aqp2 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 9.163e-28
Identity = 83/235 (35.32%), Postives = 123/235 (52.34%), Query Frame = 3
Query:  219 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGG-GANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNKDQAWDDPWIFWAGPFIGATLAALYHQIVI 920
            EL S +F RA +AEF+AT LF++  + + +  + S        +  IA AFG  I  LV     +SG HINPAVT    +   +S   A FY+  Q LGA+ GAA++   + +  E+ G    N L    + G  +  E+  T  LV  +F++TD +R            L IGF+V L HL  I  TG  +NP+RSL  A++  K   +DD W+FW GP +GA + +L +  ++
Sbjct:    3 ELRSIAFSRAVLAEFLATLLFVFFGLGSALQWASSPPS-----VLQIAVAFGLGIGILVQALGHVSGAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAAIL--HEITPVEIRGDLAVNALHNNATAGQAVTVELFLTMQLVLCIFASTDERRGDNLGS----PALSIGFSVTLGHLLGIYFTGCSMNPARSLAPAVVTGK---FDDHWVFWIGPLVGAIIGSLLYNYLL 223          
BLAST of DY257830 vs. ExPASy Swiss-Prot
Match: MIP_RABIT (Lens fiber major intrinsic protein OS=Oryctolagus cuniculus GN=MIP PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.197e-27
Identity = 83/235 (35.32%), Postives = 123/235 (52.34%), Query Frame = 3
Query:  219 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGA-NMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNKDQAWDDPWIFWAGPFIGATLAALYHQIVI 920
            EL S SF+RA  AEF AT  +++      +G S   +    + +  +A AFG  +  LV     ISG H+NPAVTF   +  ++SL  A+ YM  Q LGA+ GAAV+  +  +   + G  A N L  G S G     EI  T   V  +F+  D +RN R   V     L +GF++ L HL  +  TG G+NP+RS   A++    + + + W++W GP IG  LA+L +  ++
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFG----LGASLRWAP-GPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYMAAQLLGAVAGAAVL--YSVTPAAVRGNLALNTLHPGVSLGQATTVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAIL---TRNFTNHWVYWVGPIIGGGLASLLYDFLL 223          
BLAST of DY257830 vs. ExPASy Swiss-Prot
Match: AQPZ1_RHIME (Aquaporin Z 1 OS=Rhizobium meliloti GN=aqpZ1 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.197e-27
Identity = 74/199 (37.19%), Postives = 109/199 (54.77%), Query Frame = 3
Query:  342 VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAV--VKGFQKSQYEMLGGGANMLSK----GYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPI-LAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNKDQAWDDPWIFWAGPFIGATLAALYHQIV 917
            +G+ G+++AFG  +  + Y   GISGGH NPAV+ GL +A ++   + V Y++ Q  GAI  AAV  V    K+ +++ G  AN   +    GYS    L  E+V T   +  +  +T        S VP+  AP+ IG  + L+HL +IP+T T +NP+RS G AL    D A    W+FW  P IGA +A +  +IV
Sbjct:   34 IGLLGVSFAFGLTVLTMAYAVGGISGGHFNPAVSVGLAVAGRMPPASLVGYILAQVTGAIAAAAVLYVIASGKADFQLGGFAANGYGEHSPGGYSLTAALVTEVVMTAFFLLIILGST-------HSRVPVGFAPIAIGLGLTLIHLVSIPVTNTSVNPARSTGQALFVG-DWAISQLWLFWVAPLIGAVIAGIVWKIV 224          
BLAST of DY257830 vs. ExPASy Swiss-Prot
Match: TIP31_ORYSJ (Probable aquaporin TIP3-1 OS=Oryza sativa subsp. japonica GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.563e-27
Identity = 79/234 (33.76%), Postives = 121/234 (51.71%), Query Frame = 3
Query:  243 RAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVG-IQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLG------AEIVGTFVLVYTVFSAT-DAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNKDQAWDDPWIFWAGPFIGATLAALYHQIVI 920
            RA I+EF+AT +F++    +++ + K     ST G +  ++ A    +   V     ISGGH+NPA+TFG  L  +LSL  A+FY + Q LGA+    +++        +  GG  M   G++   G+G       E   TF L+Y  ++   D KR     HV  +APL +GF +    LA  P  G G+NP+R  G AL+      W   W++W GPF+GA LA L ++ ++
Sbjct:   27 RAAISEFLATAIFVFAAEGSILSLGKLYQDMSTPGGLVAVSLAHALALAVAVAVAVNISGGHVNPAITFGALLGGRLSLIRALFYWLAQLLGAVVATLLLR--------LTTGG--MRPPGFALASGVGDWHAVLLEATMTFGLMYAYYATVIDPKR----GHVGTIAPLAVGFLLGANMLAGGPFDGAGMNPARVFGPALV---GWRWRHHWVYWLGPFVGAGLAGLLYEYLV 243          
BLAST of DY257830 vs. ExPASy Swiss-Prot
Match: TIPA_PHAVU (Probable aquaporin TIP-type alpha OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 2.041e-27
Identity = 85/241 (35.27%), Postives = 125/241 (51.87%), Query Frame = 3
Query:  243 RAGIAEFVATFLFLYITVLTVMGVSK--SKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGA------EIVGTFVLVYTVF-SATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNKDQAWDDPWIFWAGPFIGATLAALYHQIVIRAIPIQ 938
            RA +AEF +TF+F++    + + + K    S  S   +  +A A    +FA V  +  +SGGH+NPAV+FG  +  ++S+  AV+Y I Q LG+I  A V++              NM   G+    G+G       E+V TF L+YTV+ +A D KR A    V  +APL IG  V    L   P  G  +NP+ + G +L+      W   WIFW GP +GA LAAL ++  +  IPI+
Sbjct:   21 RASLAEFASTFIFVFAGEGSGLALVKIYQDSAFSAGELLALALAHAFALFAAVSASMHVSGGHVNPAVSFGALIGGRISVIRAVYYWIAQLLGSIVAALVLRLVTN----------NMRPSGFHVSPGVGVGHMFILEVVMTFGLMYTVYGTAIDPKRGA----VSYIAPLAIGLIVGANILVGGPFDGACMNPALAFGPSLV---GWQWHQHWIFWVGPLLGAALAALVYEYAV--IPIE 242          
BLAST of DY257830 vs. ExPASy Swiss-Prot
Match: TIP32_MAIZE (Aquaporin TIP3-2 OS=Zea mays GN=TIP3-2 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 2.666e-27
Identity = 79/235 (33.62%), Postives = 119/235 (50.64%), Query Frame = 3
Query:  243 RAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTV----GIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGAN----MLSKGYSKGDGLGAEIVGTFVLVYTVF-SATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNKDQAWDDPWIFWAGPFIGATLAALYHQIVI 920
            RA I+EF+AT +F++    +V+ + K     ST+    G+  +A A    +   V     +SGGH+NPAVTFG  +  ++SL  AV Y   Q LGA+    +++        +  GGA      L+ G   G  +  E V TF  VY  + +  D KR     H+  +APL +GF +    LA  P  G G+NP+R  G AL+      W   W++W GPF+GA LA L ++ ++
Sbjct:   28 RAAISEFIATAIFVFAAEGSVLSLGKMYHDHSTISTAGGLVAVALAHALGLAVAVAVAVNVSGGHVNPAVTFGALVGGRVSLVRAVLYWAAQLLGAVAATLLLR--------LATGGARPPGFALASGVGDGHAVLLEAVMTFGFVYAYYATVVDPKR----GHLGTIAPLAVGFLLGANVLAGGPFDGAGMNPARVFGPALV---GWRWRHHWVYWLGPFLGAGLAGLVYEYLL 247          
BLAST of DY257830 vs. ExPASy Swiss-Prot
Match: MIP_SHEEP (Lens fiber major intrinsic protein OS=Ovis aries GN=MIP PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 3.482e-27
Identity = 82/235 (34.89%), Postives = 124/235 (52.77%), Query Frame = 3
Query:  219 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGA-NMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNKDQAWDDPWIFWAGPFIGATLAALYHQIVI 920
            EL S SF+RA  AEF AT  +++      +G S   +    + +  +A AFG  +  LV     ISG H+NPAVTF   +  ++SL  A+ Y++ Q LGA+ GAAV+  +  +   + G  A N L  G S G     EI  T   V  +F+  D +RN R   V     L +GF++ L HL  +  TG G+NP+RS   A++    + + + W++W GP IGA L +L +  ++
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFG----LGASLRWAP-GPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVL--YSVTPPAVRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAIL---TRNFTNHWVYWVGPVIGAGLGSLLYDFLL 223          
BLAST of DY257830 vs. ExPASy Swiss-Prot
Match: MIP_BOVIN (Lens fiber major intrinsic protein OS=Bos taurus GN=MIP PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 4.547e-27
Identity = 82/235 (34.89%), Postives = 124/235 (52.77%), Query Frame = 3
Query:  219 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGA-NMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNKDQAWDDPWIFWAGPFIGATLAALYHQIVI 920
            EL S SF+RA  AEF A+  +++      +G S   +    + +  +A AFG  +  LV     ISG H+NPAVTF   +  ++SL  A+ YM+ Q LGA+ GAAV+  +  +   + G  A N L  G S G     EI  T   V  +F+  D +RN R   V     L +GF++ L HL  +  TG G+NP+RS   A++    + + + W++W GP IGA L +L +  ++
Sbjct:    3 ELRSASFWRAICAEFFASLFYVFFG----LGASLRWAP-GPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVL--YSVTPPAVRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAIL---TRNFTNHWVYWVGPVIGAGLGSLLYDFLL 223          
The following BLAST results are available for this feature:
BLAST of DY257830 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 201
Match NameE-valueIdentityDescription
TIP21_ARATH9.163e-2836.40Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1... [more]
TIP1_MEDSA9.163e-2834.03Probable aquaporin TIP-type OS=Medicago sativa GN=... [more]
AQP2_RAT9.163e-2835.32Aquaporin-2 OS=Rattus norvegicus GN=Aqp2 PE=1 SV=1[more]
MIP_RABIT1.197e-2735.32Lens fiber major intrinsic protein OS=Oryctolagus ... [more]
AQPZ1_RHIME1.197e-2737.19Aquaporin Z 1 OS=Rhizobium meliloti GN=aqpZ1 PE=3 ... [more]
TIP31_ORYSJ1.563e-2733.76Probable aquaporin TIP3-1 OS=Oryza sativa subsp. j... [more]
TIPA_PHAVU2.041e-2735.27Probable aquaporin TIP-type alpha OS=Phaseolus vul... [more]
TIP32_MAIZE2.666e-2733.62Aquaporin TIP3-2 OS=Zea mays GN=TIP3-2 PE=2 SV=1[more]
MIP_SHEEP3.482e-2734.89Lens fiber major intrinsic protein OS=Ovis aries G... [more]
MIP_BOVIN4.547e-2734.89Lens fiber major intrinsic protein OS=Bos taurus G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1CH07ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257830 ID=DY257830; Name=DY257830; organism=Citrus clementina; type=EST; length=1120bp
GGAGCCCGTTGTGCCATTTATTTATTCTATTCACTCCCAAGAAACTTGAA
CCTATCTTGTCTATTAATTTTCACAAGAACATAATGGAGGGCAAAGAAGA
GGATGTAAGAGTGGGAGCAAATAGGTATCGAGAGAGTCAACCTATTGGAA
CCGCGGCTCAAACTCAGGATGTGAAGGATTACACGGAGCCACCTCCGGCG
CCGCTCTTCGAGCCCGGCGAATTATCGTCGTGGTCCTTTTACAGGGCTGG
CATTGCGGAGTTTGTGGCCACGTTCTTGTTTCTTTACATCACTGTTCTAA
CAGTGATGGGCGTGTCCAAATCCAAAAGCAAATGTTCCACTGTGGGAATC
CAGGGCATCGCTTGGGCTTTTGGCGGCATGATCTTCGCTCTAGTCTACTG
CACTGCTGGCATTTCAGGGGGTCACATTAACCCAGCGGTGACATTCGGGC
TGTTCTTGGCCCGAAAGCTGTCGCTTACCACGGCAGTTTTTTACATGATA
ATGCAGTGTTTAGGGGCCATATGCGGTGCCGCCGTTGTAAAGGGCTTTCA
GAAAAGCCAATATGAAATGCTAGGCGGCGGTGCCAACATGCTCAGCAAAG
GCTACAGCAAGGGAGATGGCCTTGGAGCCGAGATTGTTGGTACCTTTGTT
CTTGTTTACACTGTCTTCTCGGCCACTGATGCCAAGCGCAATGCCCGCGA
TTCTCATGTTCCTATATTGGCACCCCTGCCCATAGGATTTGCTGTGTTTT
TGGTGCACTTGGCAACAATTCCTATCACAGGAACAGGCATTAACCCATCT
AGGAGTCTTGGCGCAGCTCTGATATACAACAAGGACCAAGCCTGGGATGA
TCCTTGGATTTTCTGGGCAGGACCATTCATTGGAGCAACGCTTGCCGCTT
TATATCATCAAATTGTGATCAGGGCCATCCCAATTCAGTCCAAATGGATA
GTCATTAATTTCAATCCGTTCAATTAAAACCCCTGTATGGAAGTTAAATT
GCCCCCTGTCCCGGGGGTTTGCTTTTAATTTTTCCCCGGGATAGGGACCA
CCCTTTTGGGGGTTTGGGCCTTTTAAATTGTGGTTGAGACCTTCCATGTT
TCAGGGGCCCATTTCCCTTT
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