DY257830

Overview
NameDY257830
Unique NameDY257830
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1120
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12725 contig Ccv1_Contig12725:169..1287. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257830 vs. ExPASy Swiss-Prot
Match: AQPZ_PSEPK (Aquaporin Z OS=Pseudomonas putida (strain KT2440) GN=aqpZ PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 7.757e-27
Identity = 72/196 (36.73%), Postives = 105/196 (53.57%), Query Frame = 3
Query:  342 VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVV-------KGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNKDQAWDDPWIFWAGPFIGATL-AALY 905
            +G+ G+A+AFG  +  + +    ISG H+NPAV+FGL +  +      + Y+I Q +GAI  A V+        GF+ S      G A+    GY+ G G  +E+V T + +  +  ATDA+  A        AP+ IG A+ L+HL +IP+T T +NP+RS G AL      A    W+FW  P IGA +  ALY
Sbjct:   35 IGVLGVAFAFGLTVLTMAFAIGHISGCHLNPAVSFGLVVGGRFPAKELLPYVIAQVIGAILAAGVIYLIASGKAGFELSAGLASNGYADHSPGGYTLGAGFVSEVVMTAMFLVVIMGATDARAPAG------FAPIAIGLALTLIHLISIPVTNTSVNPARSTGPALFVG-GWALQQLWLFWVAPLIGAAIGGALY 223          
BLAST of DY257830 vs. ExPASy Swiss-Prot
Match: TIP21_ORYSJ (Probable aquaporin TIP2-1 OS=Oryza sativa subsp. japonica GN=TIP2-1 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.323e-26
Identity = 84/234 (35.90%), Postives = 123/234 (52.56%), Query Frame = 3
Query:  216 GELSSWSFYRAGIAEFVATFLFLYITVLTVM--GVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVF-SATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNKDQAWDDPWIFWAGPFIGATLAALYH 908
            G+  S +  +A +AEF+AT LF++  V + +  G   +       G+  IA A    +F  V   A ISGGH+NPAVTFGL +   +++ T +FY I Q LGA     ++K     +     G A     G S+ +G+  EIV TF LVYTV+ +A D K+ +    +  +AP+ IGF V    LA  P +G  +NP+RS G A+       +   W++W GP IG  LA L +
Sbjct:   10 GDSFSATSVKAYVAEFIATLLFVFAGVGSAIAYGQLTNGGALDPAGLVAIAIAHALALFVGVSVAANISGGHLNPAVTFGLAVGGHITILTGLFYWIAQLLGASIACLLLKFVTHGKAIPTHGVA-----GISELEGVVMEIVITFALVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVAAGN---FAGNWVYWVGPLIGGGLAGLVY 231          
BLAST of DY257830 vs. ExPASy Swiss-Prot
Match: MIP_CANFA (Lens fiber major intrinsic protein OS=Canis familiaris GN=MIP PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.323e-26
Identity = 82/235 (34.89%), Postives = 121/235 (51.49%), Query Frame = 3
Query:  219 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGA-NMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNKDQAWDDPWIFWAGPFIGATLAALYHQIVI 920
            EL S SF+RA  AEF AT  +++      +G S   +    + +  +A AFG  +  LV     ISG H+NPAVTF   +  ++SL  A  YM  Q LGA+ GAAV+  +  +   + G  A N L  G S G     EI  T   V  +F+  D +RN R   V     L +GF++ L HL  +  TG G+NP+RS   A++    + + + W++W GP IG  L +L +  ++
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFG----LGASLRWTP-GPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYMAAQLLGAVAGAAVL--YSVTPPAVRGNLALNTLHPGVSVGQATTVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAIL---TRNFTNHWVYWVGPIIGGGLGSLLYDFLL 223          
BLAST of DY257830 vs. ExPASy Swiss-Prot
Match: AQPZ_BRUAB (Aquaporin Z OS=Brucella abortus GN=aqpZ PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.323e-26
Identity = 68/193 (35.23%), Postives = 99/193 (51.30%), Query Frame = 3
Query:  342 VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGG------ANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNKDQAWDDPWIFWAGPFIGATLAAL 902
            +G  G+A AFG  +  + Y   GISGGH NPAV+ GL +A +L     + Y + Q LGAI  AA++      +     GG        +   GYS   GL  EI+ T   +  +  +T +   A        AP+ IGF + L+HL +IP+T T +NP+RS G AL  ++  A    W+FW  P +GA + A+
Sbjct:   34 IGFLGVALAFGLTVLTMAYAVGGISGGHFNPAVSLGLTVAGRLPAKDLIPYWVAQVLGAIAAAAILYVIASGKDGFSAGGLASNGYGELSPGGYSMMAGLLIEIILTAFFIIIILGSTSSLAPAG------FAPIAIGFGLTLIHLVSIPVTNTSVNPARSTGVALFADR-AALSQLWLFWVAPLVGAVIGAI 219          
BLAST of DY257830 vs. ExPASy Swiss-Prot
Match: AQPZ_BRUA2 (Aquaporin Z OS=Brucella abortus (strain 2308) GN=aqpZ PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.323e-26
Identity = 68/193 (35.23%), Postives = 99/193 (51.30%), Query Frame = 3
Query:  342 VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGG------ANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNKDQAWDDPWIFWAGPFIGATLAAL 902
            +G  G+A AFG  +  + Y   GISGGH NPAV+ GL +A +L     + Y + Q LGAI  AA++      +     GG        +   GYS   GL  EI+ T   +  +  +T +   A        AP+ IGF + L+HL +IP+T T +NP+RS G AL  ++  A    W+FW  P +GA + A+
Sbjct:   34 IGFLGVALAFGLTVLTMAYAVGGISGGHFNPAVSLGLTVAGRLPAKDLIPYWVAQVLGAIAAAAILYVIASGKDGFSAGGLASNGYGELSPGGYSMMAGLLIEIILTAFFIIIILGSTSSLAPAG------FAPIAIGFGLTLIHLVSIPVTNTSVNPARSTGVALFADR-AALSQLWLFWVAPLVGAVIGAI 219          
BLAST of DY257830 vs. ExPASy Swiss-Prot
Match: TIP2_TOBAC (Probable aquaporin TIP-type RB7-18C OS=Nicotiana tabacum PE=2 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 2.948e-26
Identity = 79/234 (33.76%), Postives = 122/234 (52.14%), Query Frame = 3
Query:  216 GELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSK--SKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVF-SATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNKDQAWDDPWIFWAGPFIGATLAALYH 908
            G+  S    +A +AEF+AT LF++  V + +  +K  + +     G+  +A A    +F  V   A ISGGH+NPAVT GL +   +++ T  FY I Q LG+     ++K         L    + ++ G +   G+  EI+ TF LVYTV+ +A D K+ +    +  +AP+ IGF V    LA  P +G  +NP+RS G A++      +   WI+WAGP IG  LA   +
Sbjct:   10 GDSFSVGSLKAYVAEFIATLLFVFAGVGSAIAYNKLTADAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAVGGNITILTGFFYWIAQLLGSTVACLLLKYVTNG----LAVPTHGVAAGLNGFQGVVMEIIITFALVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVAGD---FSQNWIYWAGPLIGGGLAGFIY 232          
BLAST of DY257830 vs. ExPASy Swiss-Prot
Match: TIP13_ARATH (Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3 PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.948e-26
Identity = 81/241 (33.61%), Postives = 119/241 (49.38%), Query Frame = 3
Query:  213 PGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSK--SKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGG---GANMLSKGYSKGDGLGAEIVGTFVLVYTVF-SATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNKDQAWDDPWIFWAGPFIGATLAALYHQIV 917
            PGE S     RA  AEF +  +F++    + M   K       +  G+   + +    +F  V   A +SGGH+NPAVTFG F+   ++L  A+ Y I Q LGA+    ++K          GG    A  LS G +  + +  EIV TF LVYTV+ +A D K+      + I+APL IG  V    L      G  +NP+ S G A++      W + W++W GPFIGA +AA+ +  +
Sbjct:   11 PGEASRPDAIRAAFAEFFSMVIFVFAGQGSGMAYGKLTGDGPATPAGLVAASLSHAFALFVAVSVGANVSGGHVNPAVTFGAFIGGNITLLRAILYWIAQLLGAVVACLLLK-------VSTGGMETAAFSLSYGVTPWNAVVFEIVMTFGLVYTVYATAVDPKK----GDIGIIAPLAIGLIVGANILVGGAFDGASMNPAVSFGPAVV---SWIWTNHWVYWVGPFIGAAIAAIVYDTI 237          
BLAST of DY257830 vs. ExPASy Swiss-Prot
Match: MIP_RAT (Lens fiber major intrinsic protein (Fragment) OS=Rattus norvegicus GN=Mip PE=1 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 2.948e-26
Identity = 80/235 (34.04%), Postives = 120/235 (51.06%), Query Frame = 3
Query:  219 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGA-NMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNKDQAWDDPWIFWAGPFIGATLAALYHQIVI 920
            EL S SF+RA  AEF AT  +++  +      S  +     + +  +A AFG  +  LV     ISG H+NPAVTF   +  ++SL  A  Y+  Q LGA+ GAAV+  +  +   + G  A N L  G S G     EI  T   V  +F+  D +RN R   V     L +GF++ L HL  +  TG G+NP+RS   A++    + + + W++W GP IG  L +L +  ++
Sbjct:    1 ELRSASFWRAIFAEFFATLFYVFFGL-----GSSLRWAPGPLHVLQVALAFGLALATLVQTVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYIAAQLLGAVAGAAVL--YSVTPPAVRGNLALNTLHAGVSVGQATTVEIFLTLQFVLCIFATYDERRNGRMGSV----ALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAIL---TRNFSNHWVYWVGPIIGGGLGSLLYDFLL 221          
BLAST of DY257830 vs. ExPASy Swiss-Prot
Match: MIP_MOUSE (Lens fiber major intrinsic protein OS=Mus musculus GN=Mip PE=1 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 2.948e-26
Identity = 81/235 (34.47%), Postives = 121/235 (51.49%), Query Frame = 3
Query:  219 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGA-NMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNKDQAWDDPWIFWAGPFIGATLAALYHQIVI 920
            EL S SF+RA  AEF AT  +++      +G S   +    + +  +A AFG  +  LV     ISG H+NPAVTF   +  ++SL  A  Y+  Q LGA+ GAAV+  +  +   + G  A N L  G S G     EI  T   V  +F+  D +RN R   V     L +GF++ L HL  +  TG G+NP+RS   A++    + + + W++W GP IG  L +L +  ++
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFG----LGASLRWAP-GPLHVLQVALAFGLALATLVQTVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYIAAQLLGAVAGAAVL--YSVTPPAVRGNLALNTLHAGVSVGQATTVEIFLTLQFVLCIFATYDERRNGRMGSV----ALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAIL---TRNFSNHWVYWVGPIIGGGLGSLLYDFLL 223          
BLAST of DY257830 vs. ExPASy Swiss-Prot
Match: TIP1_TOBAC (Probable aquaporin TIP-type RB7-5A OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 3.850e-26
Identity = 79/234 (33.76%), Postives = 122/234 (52.14%), Query Frame = 3
Query:  216 GELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSK--SKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVF-SATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNKDQAWDDPWIFWAGPFIGATLAALYH 908
            G+  S    +A +AEF+AT LF++  V + +  +K  + +     G+  +A A    +F  V   A ISGGH+NPAVT GL +   +++ T  FY I Q LG+     ++K         L    + ++ G +   G+  EI+ TF LVYTV+ +A D K+ +    +  +AP+ IGF V    LA  P +G  +NP+RS G A++      +   WI+WAGP IG  LA   +
Sbjct:   10 GDSFSVGSLKAYVAEFIATLLFVFAGVGSAIAYNKLTADAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAVGGNITILTGFFYWIAQLLGSTVACLLLKYVTNG----LAVPTHGVAAGLNGLQGVVMEIIITFALVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVAGD---FSQNWIYWAGPLIGGGLAGFIY 232          
The following BLAST results are available for this feature:
BLAST of DY257830 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 201
Match NameE-valueIdentityDescription
AQPZ_PSEPK7.757e-2736.73Aquaporin Z OS=Pseudomonas putida (strain KT2440) ... [more]
TIP21_ORYSJ1.323e-2635.90Probable aquaporin TIP2-1 OS=Oryza sativa subsp. j... [more]
MIP_CANFA1.323e-2634.89Lens fiber major intrinsic protein OS=Canis famili... [more]
AQPZ_BRUAB1.323e-2635.23Aquaporin Z OS=Brucella abortus GN=aqpZ PE=3 SV=1[more]
AQPZ_BRUA21.323e-2635.23Aquaporin Z OS=Brucella abortus (strain 2308) GN=a... [more]
TIP2_TOBAC2.948e-2633.76Probable aquaporin TIP-type RB7-18C OS=Nicotiana t... [more]
TIP13_ARATH2.948e-2633.61Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3... [more]
MIP_RAT2.948e-2634.04Lens fiber major intrinsic protein (Fragment) OS=R... [more]
MIP_MOUSE2.948e-2634.47Lens fiber major intrinsic protein OS=Mus musculus... [more]
TIP1_TOBAC3.850e-2633.76Probable aquaporin TIP-type RB7-5A OS=Nicotiana ta... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1CH07ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257830 ID=DY257830; Name=DY257830; organism=Citrus clementina; type=EST; length=1120bp
GGAGCCCGTTGTGCCATTTATTTATTCTATTCACTCCCAAGAAACTTGAA
CCTATCTTGTCTATTAATTTTCACAAGAACATAATGGAGGGCAAAGAAGA
GGATGTAAGAGTGGGAGCAAATAGGTATCGAGAGAGTCAACCTATTGGAA
CCGCGGCTCAAACTCAGGATGTGAAGGATTACACGGAGCCACCTCCGGCG
CCGCTCTTCGAGCCCGGCGAATTATCGTCGTGGTCCTTTTACAGGGCTGG
CATTGCGGAGTTTGTGGCCACGTTCTTGTTTCTTTACATCACTGTTCTAA
CAGTGATGGGCGTGTCCAAATCCAAAAGCAAATGTTCCACTGTGGGAATC
CAGGGCATCGCTTGGGCTTTTGGCGGCATGATCTTCGCTCTAGTCTACTG
CACTGCTGGCATTTCAGGGGGTCACATTAACCCAGCGGTGACATTCGGGC
TGTTCTTGGCCCGAAAGCTGTCGCTTACCACGGCAGTTTTTTACATGATA
ATGCAGTGTTTAGGGGCCATATGCGGTGCCGCCGTTGTAAAGGGCTTTCA
GAAAAGCCAATATGAAATGCTAGGCGGCGGTGCCAACATGCTCAGCAAAG
GCTACAGCAAGGGAGATGGCCTTGGAGCCGAGATTGTTGGTACCTTTGTT
CTTGTTTACACTGTCTTCTCGGCCACTGATGCCAAGCGCAATGCCCGCGA
TTCTCATGTTCCTATATTGGCACCCCTGCCCATAGGATTTGCTGTGTTTT
TGGTGCACTTGGCAACAATTCCTATCACAGGAACAGGCATTAACCCATCT
AGGAGTCTTGGCGCAGCTCTGATATACAACAAGGACCAAGCCTGGGATGA
TCCTTGGATTTTCTGGGCAGGACCATTCATTGGAGCAACGCTTGCCGCTT
TATATCATCAAATTGTGATCAGGGCCATCCCAATTCAGTCCAAATGGATA
GTCATTAATTTCAATCCGTTCAATTAAAACCCCTGTATGGAAGTTAAATT
GCCCCCTGTCCCGGGGGTTTGCTTTTAATTTTTCCCCGGGATAGGGACCA
CCCTTTTGGGGGTTTGGGCCTTTTAAATTGTGGTTGAGACCTTCCATGTT
TCAGGGGCCCATTTCCCTTT
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