DY257874
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY257874 vs. ExPASy Swiss-Prot
Match: RL3_NITWN (50S ribosomal protein L3 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=rplC PE=3 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 2.298e-39 Identity = 71/163 (43.56%), Postives = 98/163 (60.12%), Query Frame = 1 Query: 220 RTGLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 R+G+IA K G+T + + G IPV+VL + + V +T EK G+ +LQ+G G +K +M K E G F V KRK+ EF V+ED+L+P+G + HF+ GQ+VD+ RW F G+ A+HG S+SHRS+GSTG R PGK FK KK G Sbjct: 2 RSGVIAQKVGMTRVFTEAGEHIPVTVLKLSNCQVLGHRTSEKNGYVALQLGSGARKTVYMPKAERGQFAVAKVAPKRKVAEFRVSEDSLIPVGAEIQADHFVVGQFVDVTGTSVGKGYAGGMKRWNFGGLRATHGVSISHRSIGSTGGRQDPGKTFKNKKMPG 164 HSP 2 Score: 47.3654 bits (111), Expect = 2.298e-39 Identity = 26/61 (42.62%), Postives = 37/61 (60.66%), Query Frame = 3 Query: 693 QKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVXQKPDVKLLPFP 875 +KMPG MG + T N+ V + D R L+ V G VPG+ G ++ ++DAV +KP K P P Sbjct: 160 KKMPGHMGVDRITTLNLRVVQTDVERGLILVEGAVPGSKGGWIAVRDAV-KKPLPKEAPKP 219
BLAST of DY257874 vs. ExPASy Swiss-Prot
Match: RL3_PARDP (50S ribosomal protein L3 OS=Paracoccus denitrificans (strain Pd 1222) GN=rplC PE=3 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 2.298e-39 Identity = 72/163 (44.17%), Postives = 96/163 (58.90%), Query Frame = 1 Query: 220 RTGLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 RTG+IA K G+T + + G ++PV+VL VD+ V +T E++G+ +LQ+G G+ K K T GHF V KRK+ EF V+ + L+ +G + H+ GQYVDI R F G+ ASHG S+SHRS GSTGQ PGKVFKGKK G Sbjct: 3 RTGVIAKKLGMTRLFLEDGRQVPVTVLHVDNVQVIAQRTAEQDGYVALQLGAGEAKAKRTTAALRGHFAKANVAPKRKIAEFRVSPENLVEVGEEIVADHYFEGQYVDIAGTSIGKGFAGAMKRHNFGGLRASHGVSISHRSHGSTGQCQDPGKVFKGKKMAG 165 HSP 2 Score: 53.9138 bits (128), Expect = 2.298e-39 Identity = 29/68 (42.65%), Postives = 41/68 (60.29%), Query Frame = 3 Query: 690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVXQKPDVKLLPFPHTLQQK 893 G+KM G +G + T +N+ V K D R L+ V+G VPG+ G +V IKDAV +KP + FP + K Sbjct: 160 GKKMAGHLGAVRVTTQNLQVVKTDAERGLIMVKGSVPGSKGGWVTIKDAV-KKPLAESTVFPAATRSK 226
BLAST of DY257874 vs. ExPASy Swiss-Prot
Match: RL3_RHOP2 (50S ribosomal protein L3 OS=Rhodopseudomonas palustris (strain HaA2) GN=rplC PE=3 SV=1) HSP 1 Score: 138.658 bits (348), Expect = 2.996e-39 Identity = 72/163 (44.17%), Postives = 98/163 (60.12%), Query Frame = 1 Query: 220 RTGLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 R+G+IA K G+T + + G IPV+VL + + V +T EK G+ +LQ+G G +K +M K E G F V KRK+ EF V+EDAL+P+G + HF+ GQ+VD+ RW F G+ A+HG S+SHRS+GSTG R PGK FK KK G Sbjct: 2 RSGVIAQKVGMTRVFTETGEHIPVTVLKLGNCQVLAHRTTEKNGYVALQLGSGARKTVYMPKAERGQFAVAKVEPKRKVAEFRVSEDALIPVGAEIQADHFVVGQFVDVTGTSVGKGFAGGMKRWNFGGLRATHGVSVSHRSIGSTGGRQDPGKTFKNKKMPG 164 HSP 2 Score: 45.8246 bits (107), Expect = 2.996e-39 Identity = 21/49 (42.86%), Postives = 32/49 (65.31%), Query Frame = 3 Query: 693 QKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 839 +KMPG MG + T N+ V ++D R L+ V G VPG+ G ++ ++DAV Sbjct: 160 KKMPGHMGVDRITTLNLRVVQLDVERGLILVEGAVPGSKGGWISVRDAV 208
BLAST of DY257874 vs. ExPASy Swiss-Prot
Match: RL3_SPHAL (50S ribosomal protein L3 OS=Sphingopyxis alaskensis GN=rplC PE=3 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 3.898e-39 Identity = 70/163 (42.94%), Postives = 95/163 (58.28%), Query Frame = 1 Query: 220 RTGLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 RTG+IA K G+T + G +PV+VL ++ V V+ E++G+ ++Q+G G K K++ KP+ G + V K KL EF V +DA L +G L HF+ GQ VDI RWGF GM A+HG S+SHR+ GSTG R PG+VFK KK G Sbjct: 2 RTGVIAKKMGMTRLFQDDGRHVPVTVLSLEGCQVVSVRDKERDGYVAVQLGAGTAKAKNVAKPQRGAYGKAEVEPKAKLVEFRVADDATLDVGAELSADHFVAGQMVDIQGVTQGKGFAGAMKRWGFGGMRATHGVSISHRAHGSTGNRQDPGRVFKNKKMAG 164 HSP 2 Score: 51.2174 bits (121), Expect = 3.898e-39 Identity = 23/65 (35.38%), Postives = 42/65 (64.62%), Query Frame = 3 Query: 693 QKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVXQKPDVKLLPFPHTLQ 887 +KM G MG + RT +N+ + + D R L++V+G VPG+ G ++ ++DAV + P P+P +++ Sbjct: 160 KKMAGHMGARNRTQQNLEIVRTDAERGLLFVKGSVPGSKGGWLLVRDAV-KLPRHPEAPYPASIK 223
BLAST of DY257874 vs. ExPASy Swiss-Prot
Match: RL3_RHOP5 (50S ribosomal protein L3 OS=Rhodopseudomonas palustris (strain BisA53) GN=rplC PE=3 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 3.903e-39 Identity = 72/163 (44.17%), Postives = 99/163 (60.74%), Query Frame = 1 Query: 220 RTGLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 R+G+IA K G+T + + G IPV+VL + + V +T EK G+ +LQ+G G +K +M K E G F A V KRK+ EF V+ED+++PIG + HF+ GQ+VD+ RW F G+ A+HG S+SHRS+GSTG R PGK FK KK G Sbjct: 2 RSGVIAQKVGMTRVFTETGEHIPVTVLKLGNCQVLGHRTSEKNGYTALQLGSGSRKTVYMPKAERGQFAAAKVEPKRKVAEFRVSEDSMIPIGAEIQADHFVVGQFVDVTGTSVGKGFAGGIKRWNFGGLRATHGVSVSHRSIGSTGGRQDPGKTFKNKKMPG 164 HSP 2 Score: 45.8246 bits (107), Expect = 3.903e-39 Identity = 21/49 (42.86%), Postives = 32/49 (65.31%), Query Frame = 3 Query: 693 QKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 839 +KMPG MG + T N+ V ++D R L+ V G VPG+ G ++ ++DAV Sbjct: 160 KKMPGHMGVDRITTLNLRVVQLDVERGLILVEGAVPGSKGGWIAVRDAV 208
BLAST of DY257874 vs. ExPASy Swiss-Prot
Match: RL3_RHOPB (50S ribosomal protein L3 OS=Rhodopseudomonas palustris (strain BisB18) GN=rplC PE=3 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 8.630e-39 Identity = 70/163 (42.94%), Postives = 98/163 (60.12%), Query Frame = 1 Query: 220 RTGLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 R+G+IA K G+T + + G IPV+VL + + V +T EK G+ ++Q+G G +K ++ K E G F V KRK+ EF V+EDAL+P+G + HF+ GQ+VD+ RW F G+ A+HG S+SHRS+GSTG R PGK FK KK G Sbjct: 2 RSGVIAQKVGMTRVFTETGEHIPVTVLKLGNCQVLGHRTTEKNGYVAMQLGSGTRKTVYLPKAERGQFAVAKVEPKRKVAEFRVSEDALIPVGAEIQADHFVVGQFVDVTGTSVGKGFAGGIKRWNFGGLRATHGVSVSHRSIGSTGGRQDPGKTFKNKKMPG 164 HSP 2 Score: 46.595 bits (109), Expect = 8.630e-39 Identity = 22/49 (44.90%), Postives = 32/49 (65.31%), Query Frame = 3 Query: 693 QKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 839 +KMPG MG + T N+ V + D AR L+ V G VPG+ G ++ ++DAV Sbjct: 160 KKMPGHMGVDRITTLNLRVVQTDVARGLILVEGAVPGSKGGWIAVRDAV 208
BLAST of DY257874 vs. ExPASy Swiss-Prot
Match: RL3_RHOPS (50S ribosomal protein L3 OS=Rhodopseudomonas palustris (strain BisB5) GN=rplC PE=3 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 8.632e-39 Identity = 72/163 (44.17%), Postives = 98/163 (60.12%), Query Frame = 1 Query: 220 RTGLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 R+G+IA K G+T + + G IPV+VL + + V +T EK G+ +LQ+G G +K +M K E G F V KRK+ EF V+EDAL+P+G + HF+ GQ+VD+ RW F G+ A+HG S+SHRS+GSTG R PGK FK KK G Sbjct: 2 RSGVIAQKVGMTRVFTEAGEHIPVTVLKLGNCQVVAHRTTEKNGYVALQLGSGARKTVYMPKAERGQFAVAKVEPKRKVAEFRVSEDALIPVGAEIQADHFVVGQFVDVTGTSTGKGFAGGMKRWNFGGLRATHGVSVSHRSIGSTGGRQDPGKTFKNKKMPG 164 HSP 2 Score: 44.669 bits (104), Expect = 8.632e-39 Identity = 21/49 (42.86%), Postives = 31/49 (63.27%), Query Frame = 3 Query: 693 QKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 839 +KMPG MG + T N+ V + D R L+ V G VPG+ G ++ ++DAV Sbjct: 160 KKMPGHMGVDRITTLNLRVVQTDVERGLILVEGAVPGSKGGWISVRDAV 208
BLAST of DY257874 vs. ExPASy Swiss-Prot
Match: RL3_RICAH (50S ribosomal protein L3 OS=Rickettsia akari (strain Hartford) GN=rplC PE=3 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 8.650e-39 Identity = 73/163 (44.79%), Postives = 97/163 (59.51%), Query Frame = 1 Query: 220 RTGLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 RTG+IA K G+T+ ++ G RIP++++ VDD V KT EK G+ +L +G KK +TKP F + K KL+EF ++E + I +L V HF+ GQ+VDI R F+G+ ASHG S+SHRS GSTGQR PGKVFKGKK G Sbjct: 2 RTGIIAQKIGMTSVFNDKGERIPLTLVKVDDCQVVGHKTLEKHGYNALVIGIKDKKISRVTKPMKQVFANAKISPKTKLKEFRISEGNFIDIAANLEVDHFMAGQFVDITATTIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAG 164 HSP 2 Score: 50.447 bits (119), Expect = 8.650e-39 Identity = 21/50 (42.00%), Postives = 34/50 (68.00%), Query Frame = 3 Query: 690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 839 G+KM G MG Q T++N+ ++ +D R L+ +RG +PG +++ IKDAV Sbjct: 159 GKKMAGHMGCNQVTIQNLKIFAVDRERKLIMIRGSIPGHKNSYLSIKDAV 208
BLAST of DY257874 vs. ExPASy Swiss-Prot
Match: RL3_XANP2 (50S ribosomal protein L3 OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=rplC PE=3 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 1.125e-38 Identity = 70/163 (42.94%), Postives = 98/163 (60.12%), Query Frame = 1 Query: 220 RTGLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 R+G+IA K G+T + G +PV+VL V+ V +T +K G+ ++Q+G G++K K++T+ E GHF V K KL EF V E+AL+P+G + HF+ GQYVD+ R F G+ A+HG S+SHRS+GSTG R PGK FK KK G Sbjct: 2 RSGVIAQKVGMTRIFTDAGEHVPVTVLKVESCQVVAHRTLDKNGYVAVQLGAGRRKPKNVTRAERGHFAVAQVEPKHKLAEFRVPEEALIPVGAEITADHFVVGQYVDVTGTTIGKGFAGGMKRHNFGGLRATHGVSISHRSIGSTGGRQDPGKTFKNKKMPG 164 HSP 2 Score: 45.4394 bits (106), Expect = 1.125e-38 Identity = 22/52 (42.31%), Postives = 32/52 (61.54%), Query Frame = 3 Query: 693 QKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVXQK 848 +KMPG MG T +N+ V D R L+ V G VPG +G ++ ++DAV +K Sbjct: 160 KKMPGHMGDVTVTTQNLKVVMTDVERGLIAVEGAVPGHAGGWITVRDAVKKK 211
BLAST of DY257874 vs. ExPASy Swiss-Prot
Match: RL3_RICBR (50S ribosomal protein L3 OS=Rickettsia bellii (strain RML369-C) GN=rplC PE=3 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 1.127e-38 Identity = 72/163 (44.17%), Postives = 96/163 (58.90%), Query Frame = 1 Query: 220 RTGLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 RTG+IA K G+T+ ++ G R+P++++ VDD V K EK G+ +L +G KK +TKP F V K KL+EF ++ED + I SL V HF GQ++D+ R F+G+ ASHG S+SHRS GSTGQR PGKVFKGKK G Sbjct: 2 RTGIIAQKVGMTSVFNNNGKRVPLTLVKVDDCQVVGHKIAEKHGYNALVIGIKDKKISRVTKPMKQVFANAKVSPKTKLKEFRISEDNFIDIAASLEVDHFTAGQFIDVTATTIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAG 164 HSP 2 Score: 50.8322 bits (120), Expect = 1.127e-38 Identity = 20/50 (40.00%), Postives = 35/50 (70.00%), Query Frame = 3 Query: 690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 839 G+KM G MG Q T++N+ ++ ID + L+ ++G +PG G+++ IKDA+ Sbjct: 159 GKKMAGHMGCSQVTIQNLKIFAIDKEQGLIMIQGSIPGHKGSYISIKDAI 208 The following BLAST results are available for this feature:
BLAST of DY257874 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >DY257874 ID=DY257874; Name=DY257874; organism=Citrus clementina; type=EST; length=1221bpback to top |