DY257890

Overview
NameDY257890
Unique NameDY257890
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length438
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12665 contig Ccv1_Contig12665:656..1093. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257890 vs. ExPASy Swiss-Prot
Match: RL8_XENLA (60S ribosomal protein L8 OS=Xenopus laevis GN=rpl8 PE=2 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 3.415e-20
Identity = 41/51 (80.39%), Postives = 46/51 (90.20%), Query Frame = 1
Query:    1 KFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 153
            K++ KRNCWP+VRGVAMNPVEHP GGGNHQHIG  ST+RRDAP G+KVGLI
Sbjct:  188 KYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLI 238          
BLAST of DY257890 vs. ExPASy Swiss-Prot
Match: RL8_RAT (60S ribosomal protein L8 OS=Rattus norvegicus GN=Rpl8 PE=2 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 3.415e-20
Identity = 41/51 (80.39%), Postives = 46/51 (90.20%), Query Frame = 1
Query:    1 KFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 153
            K++ KRNCWP+VRGVAMNPVEHP GGGNHQHIG  ST+RRDAP G+KVGLI
Sbjct:  188 KYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLI 238          
BLAST of DY257890 vs. ExPASy Swiss-Prot
Match: RL8_PONAB (60S ribosomal protein L8 OS=Pongo abelii GN=RPL8 PE=2 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 3.415e-20
Identity = 41/51 (80.39%), Postives = 46/51 (90.20%), Query Frame = 1
Query:    1 KFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 153
            K++ KRNCWP+VRGVAMNPVEHP GGGNHQHIG  ST+RRDAP G+KVGLI
Sbjct:  188 KYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLI 238          
BLAST of DY257890 vs. ExPASy Swiss-Prot
Match: RL8_MOUSE (60S ribosomal protein L8 OS=Mus musculus GN=Rpl8 PE=2 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 3.415e-20
Identity = 41/51 (80.39%), Postives = 46/51 (90.20%), Query Frame = 1
Query:    1 KFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 153
            K++ KRNCWP+VRGVAMNPVEHP GGGNHQHIG  ST+RRDAP G+KVGLI
Sbjct:  188 KYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLI 238          
BLAST of DY257890 vs. ExPASy Swiss-Prot
Match: RL8_ICTPU (60S ribosomal protein L8 OS=Ictalurus punctatus GN=rpl8 PE=2 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 3.415e-20
Identity = 41/51 (80.39%), Postives = 46/51 (90.20%), Query Frame = 1
Query:    1 KFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 153
            K++VKRNCWP+VRGVAMNPVEHP GGGNHQHIG  ST+RRD P G+KVGLI
Sbjct:  188 KYKVKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDVPAGRKVGLI 238          
BLAST of DY257890 vs. ExPASy Swiss-Prot
Match: RL8_HUMAN (60S ribosomal protein L8 OS=Homo sapiens GN=RPL8 PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 3.415e-20
Identity = 41/51 (80.39%), Postives = 46/51 (90.20%), Query Frame = 1
Query:    1 KFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 153
            K++ KRNCWP+VRGVAMNPVEHP GGGNHQHIG  ST+RRDAP G+KVGLI
Sbjct:  188 KYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLI 238          
BLAST of DY257890 vs. ExPASy Swiss-Prot
Match: RL8_DANRE (60S ribosomal protein L8 OS=Danio rerio GN=rpl8 PE=2 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 3.415e-20
Identity = 41/51 (80.39%), Postives = 46/51 (90.20%), Query Frame = 1
Query:    1 KFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 153
            K++ KRNCWP+VRGVAMNPVEHP GGGNHQHIG  ST+RRDAP G+KVGLI
Sbjct:  188 KYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLI 238          
BLAST of DY257890 vs. ExPASy Swiss-Prot
Match: RL8_BOVIN (60S ribosomal protein L8 OS=Bos taurus GN=RPL8 PE=2 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 3.415e-20
Identity = 41/51 (80.39%), Postives = 46/51 (90.20%), Query Frame = 1
Query:    1 KFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 153
            K++ KRNCWP+VRGVAMNPVEHP GGGNHQHIG  ST+RRDAP G+KVGLI
Sbjct:  188 KYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLI 238          
BLAST of DY257890 vs. ExPASy Swiss-Prot
Match: RL82_ARATH (60S ribosomal protein L8-2 OS=Arabidopsis thaliana GN=RPL8B PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 4.461e-20
Identity = 42/51 (82.35%), Postives = 44/51 (86.27%), Query Frame = 1
Query:    1 KFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 153
            K++ KRNCWP VRGVAMNPVEHPHGGGNHQHIGHASTVRRD   G KVG I
Sbjct:  189 KYKAKRNCWPVVRGVAMNPVEHPHGGGNHQHIGHASTVRRDKSAGAKVGQI 239          
BLAST of DY257890 vs. ExPASy Swiss-Prot
Match: RL8_SPOFR (60S ribosomal protein L8 OS=Spodoptera frugiperda GN=RpL8 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.214e-19
Identity = 41/51 (80.39%), Postives = 45/51 (88.24%), Query Frame = 1
Query:    1 KFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 153
            K++VKRNCWP VRGVAMNPVEHPHGGGNHQHIG ASTV+R    G+KVGLI
Sbjct:  188 KYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLI 238          
The following BLAST results are available for this feature:
BLAST of DY257890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
RL8_XENLA3.415e-2080.3960S ribosomal protein L8 OS=Xenopus laevis GN=rpl8... [more]
RL8_RAT3.415e-2080.3960S ribosomal protein L8 OS=Rattus norvegicus GN=R... [more]
RL8_PONAB3.415e-2080.3960S ribosomal protein L8 OS=Pongo abelii GN=RPL8 P... [more]
RL8_MOUSE3.415e-2080.3960S ribosomal protein L8 OS=Mus musculus GN=Rpl8 P... [more]
RL8_ICTPU3.415e-2080.3960S ribosomal protein L8 OS=Ictalurus punctatus GN... [more]
RL8_HUMAN3.415e-2080.3960S ribosomal protein L8 OS=Homo sapiens GN=RPL8 P... [more]
RL8_DANRE3.415e-2080.3960S ribosomal protein L8 OS=Danio rerio GN=rpl8 PE... [more]
RL8_BOVIN3.415e-2080.3960S ribosomal protein L8 OS=Bos taurus GN=RPL8 PE=... [more]
RL82_ARATH4.461e-2082.3560S ribosomal protein L8-2 OS=Arabidopsis thaliana... [more]
RL8_SPOFR2.214e-1980.3960S ribosomal protein L8 OS=Spodoptera frugiperda ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2AB07ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257890 ID=DY257890; Name=DY257890; organism=Citrus clementina; type=EST; length=438bp
AAATTCAGAGTGAAGCGAAACTGCTGGCCTAAGGTGCGTGGTGTGGCCAT
GAACCCAGTGGAGCATCCTCATGGAGGAGGTAACCACCAGCACATTGGTC
ATGCTAGCACTGTTAGGCGTGATGCTCCCCCTGGCCAGAAGGTTGGTCTT
ATTGCAGCCAGGAGGACTGGTCGGCTCAGAGGACAAGCTGCTGCCACTGC
AGCCAAGGCCGACAAGGCTTAAATCCTTTGTGTTACCACAAATCGTCTCT
CTATCGCGATCTGTCATTTTACTTTTCCTGCTGCATCATTACCTTGGAAA
AATTTGTTGAGATTTGGATCTCTGGGATGATCCTGATGTTAAATTATGTT
GGCTTAAAGTTTAGCTTAATTTGCTCTTATCCTAAACTTTAGTTGATTTT
GATATTTTTGGATATATTAATGGATGCCTTCATCGAAT
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