DY257890

Overview
NameDY257890
Unique NameDY257890
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length438
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12665 contig Ccv1_Contig12665:656..1093. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257890 vs. ExPASy Swiss-Prot
Match: RL8_MAMBR (60S ribosomal protein L8 OS=Mamestra brassicae GN=RpL8 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.214e-19
Identity = 41/51 (80.39%), Postives = 45/51 (88.24%), Query Frame = 1
Query:    1 KFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 153
            K++VKRNCWP VRGVAMNPVEHPHGGGNHQHIG ASTV+R    G+KVGLI
Sbjct:  188 KYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLI 238          
BLAST of DY257890 vs. ExPASy Swiss-Prot
Match: RL8_DROME (60S ribosomal protein L8 OS=Drosophila melanogaster GN=RpL8 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.932e-19
Identity = 41/51 (80.39%), Postives = 45/51 (88.24%), Query Frame = 1
Query:    1 KFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 153
            K++VKRN WPKVRGVAMNPVEHPHGGGNHQHIG ASTV+R    G+KVGLI
Sbjct:  188 KYKVKRNSWPKVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLI 238          
BLAST of DY257890 vs. ExPASy Swiss-Prot
Match: RL2_YEAST (60S ribosomal protein L2 OS=Saccharomyces cerevisiae GN=RPL2A PE=1 SV=3)

HSP 1 Score: 90.1225 bits (222), Expect = 4.175e-18
Identity = 39/51 (76.47%), Postives = 43/51 (84.31%), Query Frame = 1
Query:    1 KFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 153
            K+R+KRN WPK RGVAMNPV+HPHGGGNHQHIG AST+ R A  GQK GLI
Sbjct:  188 KYRLKRNSWPKTRGVAMNPVDHPHGGGNHQHIGKASTISRGAVSGQKAGLI 238          
BLAST of DY257890 vs. ExPASy Swiss-Prot
Match: RL2_ASHGO (60S ribosomal protein L2 OS=Ashbya gossypii GN=RPL2 PE=4 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 4.175e-18
Identity = 39/51 (76.47%), Postives = 43/51 (84.31%), Query Frame = 1
Query:    1 KFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 153
            K++VKRN WPK RGVAMNPV+HPHGGGNHQHIG AST+ R A  GQK GLI
Sbjct:  188 KYKVKRNSWPKTRGVAMNPVDHPHGGGNHQHIGKASTISRGAVSGQKAGLI 238          
BLAST of DY257890 vs. ExPASy Swiss-Prot
Match: RL2_CANGA (60S ribosomal protein L2 OS=Candida glabrata GN=RPL2 PE=4 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 9.301e-18
Identity = 38/51 (74.51%), Postives = 43/51 (84.31%), Query Frame = 1
Query:    1 KFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 153
            K+++KRN WPK RGVAMNPV+HPHGGGNHQHIG AST+ R A  GQK GLI
Sbjct:  188 KYKLKRNSWPKTRGVAMNPVDHPHGGGNHQHIGKASTISRGAVSGQKAGLI 238          
BLAST of DY257890 vs. ExPASy Swiss-Prot
Match: RL2_STAMF (50S ribosomal protein L2P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.939e-15
Identity = 35/51 (68.63%), Postives = 41/51 (80.39%), Query Frame = 1
Query:    1 KFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 153
            K++VK   WPKVRGVAMN V HPHGGG+HQH+G  STV R+ PPG+KVG I
Sbjct:  179 KWKVKAKKWPKVRGVAMNAVSHPHGGGSHQHVGKPSTVARETPPGRKVGHI 229          
BLAST of DY257890 vs. ExPASy Swiss-Prot
Match: RL2_DESK1 (50S ribosomal protein L2P OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.777e-14
Identity = 33/51 (64.71%), Postives = 38/51 (74.51%), Query Frame = 1
Query:    1 KFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 153
            K+  K   WPKVRGVAMN   HPHGGG+HQH+G  STV R+ PPG+KVG I
Sbjct:  179 KWSAKSRVWPKVRGVAMNAAFHPHGGGSHQHVGRPSTVARNTPPGRKVGHI 229          
BLAST of DY257890 vs. ExPASy Swiss-Prot
Match: RL2_IGNH4 (50S ribosomal protein L2P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 8.148e-14
Identity = 34/51 (66.67%), Postives = 39/51 (76.47%), Query Frame = 1
Query:    1 KFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 153
            K++ K   WP VRGVAMN V HPHGGGNHQ  G+ +TV R+APPGQKVG I
Sbjct:  182 KWKAKAKKWPVVRGVAMNAVNHPHGGGNHQSPGYPTTVARNAPPGQKVGHI 232          
BLAST of DY257890 vs. ExPASy Swiss-Prot
Match: RL2_AERPE (50S ribosomal protein L2P OS=Aeropyrum pernix GN=rpl2p PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.064e-13
Identity = 34/51 (66.67%), Postives = 39/51 (76.47%), Query Frame = 1
Query:    1 KFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 153
            K++VK   WP+VRGVAMN V+HP GGG HQH G  STV R APPG+KVG I
Sbjct:  178 KWKVKARKWPRVRGVAMNAVDHPFGGGRHQHKGRPSTVARTAPPGRKVGHI 228          
BLAST of DY257890 vs. ExPASy Swiss-Prot
Match: RL2_SULTO (50S ribosomal protein L2P OS=Sulfolobus tokodaii GN=rpl2p PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 3.096e-13
Identity = 33/51 (64.71%), Postives = 38/51 (74.51%), Query Frame = 1
Query:    1 KFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 153
            K++VK   WP VRGVAMN V HPHGGG HQ +   STV R+APPG+KVG I
Sbjct:  177 KYKVKAKKWPHVRGVAMNAVSHPHGGGLHQSVSRPSTVSRNAPPGRKVGHI 227          
The following BLAST results are available for this feature:
BLAST of DY257890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
RL8_MAMBR2.214e-1980.3960S ribosomal protein L8 OS=Mamestra brassicae GN=... [more]
RL8_DROME4.932e-1980.3960S ribosomal protein L8 OS=Drosophila melanogaste... [more]
RL2_YEAST4.175e-1876.4760S ribosomal protein L2 OS=Saccharomyces cerevisi... [more]
RL2_ASHGO4.175e-1876.4760S ribosomal protein L2 OS=Ashbya gossypii GN=RPL... [more]
RL2_CANGA9.301e-1874.5160S ribosomal protein L2 OS=Candida glabrata GN=RP... [more]
RL2_STAMF1.939e-1568.6350S ribosomal protein L2P OS=Staphylothermus marin... [more]
RL2_DESK14.777e-1464.7150S ribosomal protein L2P OS=Desulfurococcus kamch... [more]
RL2_IGNH48.148e-1466.6750S ribosomal protein L2P OS=Ignicoccus hospitalis... [more]
RL2_AERPE1.064e-1366.6750S ribosomal protein L2P OS=Aeropyrum pernix GN=r... [more]
RL2_SULTO3.096e-1364.7150S ribosomal protein L2P OS=Sulfolobus tokodaii G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2AB07ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257890 ID=DY257890; Name=DY257890; organism=Citrus clementina; type=EST; length=438bp
AAATTCAGAGTGAAGCGAAACTGCTGGCCTAAGGTGCGTGGTGTGGCCAT
GAACCCAGTGGAGCATCCTCATGGAGGAGGTAACCACCAGCACATTGGTC
ATGCTAGCACTGTTAGGCGTGATGCTCCCCCTGGCCAGAAGGTTGGTCTT
ATTGCAGCCAGGAGGACTGGTCGGCTCAGAGGACAAGCTGCTGCCACTGC
AGCCAAGGCCGACAAGGCTTAAATCCTTTGTGTTACCACAAATCGTCTCT
CTATCGCGATCTGTCATTTTACTTTTCCTGCTGCATCATTACCTTGGAAA
AATTTGTTGAGATTTGGATCTCTGGGATGATCCTGATGTTAAATTATGTT
GGCTTAAAGTTTAGCTTAATTTGCTCTTATCCTAAACTTTAGTTGATTTT
GATATTTTTGGATATATTAATGGATGCCTTCATCGAAT
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