DY257890

Overview
NameDY257890
Unique NameDY257890
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length438
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12665 contig Ccv1_Contig12665:656..1093. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257890 vs. ExPASy Swiss-Prot
Match: RL2_SULSO (50S ribosomal protein L2P OS=Sulfolobus solfataricus GN=rpl2p PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 4.044e-13
Identity = 33/51 (64.71%), Postives = 39/51 (76.47%), Query Frame = 1
Query:    1 KFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 153
            K++VK   WP VRGVAMN V+HPHGGG HQ +   STV R+APPG+KVG I
Sbjct:  177 KYKVKAKKWPIVRGVAMNVVDHPHGGGLHQSVSRPSTVSRNAPPGRKVGHI 227          
BLAST of DY257890 vs. ExPASy Swiss-Prot
Match: RL2_SULIY (50S ribosomal protein L2P OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 4.044e-13
Identity = 33/51 (64.71%), Postives = 39/51 (76.47%), Query Frame = 1
Query:    1 KFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 153
            K++VK   WP VRGVAMN V+HPHGGG HQ +   STV R+APPG+KVG I
Sbjct:  177 KYKVKAKKWPIVRGVAMNVVDHPHGGGLHQSVSRPSTVSRNAPPGRKVGHI 227          
BLAST of DY257890 vs. ExPASy Swiss-Prot
Match: RL2_SULIN (50S ribosomal protein L2P OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 4.044e-13
Identity = 33/51 (64.71%), Postives = 39/51 (76.47%), Query Frame = 1
Query:    1 KFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 153
            K++VK   WP VRGVAMN V+HPHGGG HQ +   STV R+APPG+KVG I
Sbjct:  177 KYKVKAKKWPIVRGVAMNVVDHPHGGGLHQSVSRPSTVSRNAPPGRKVGHI 227          
BLAST of DY257890 vs. ExPASy Swiss-Prot
Match: RL2_SULIM (50S ribosomal protein L2P OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 4.044e-13
Identity = 33/51 (64.71%), Postives = 39/51 (76.47%), Query Frame = 1
Query:    1 KFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 153
            K++VK   WP VRGVAMN V+HPHGGG HQ +   STV R+APPG+KVG I
Sbjct:  177 KYKVKAKKWPIVRGVAMNVVDHPHGGGLHQSVSRPSTVSRNAPPGRKVGHI 227          
BLAST of DY257890 vs. ExPASy Swiss-Prot
Match: RL2_SULIL (50S ribosomal protein L2P OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 4.044e-13
Identity = 33/51 (64.71%), Postives = 39/51 (76.47%), Query Frame = 1
Query:    1 KFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 153
            K++VK   WP VRGVAMN V+HPHGGG HQ +   STV R+APPG+KVG I
Sbjct:  177 KYKVKAKKWPIVRGVAMNVVDHPHGGGLHQSVSRPSTVSRNAPPGRKVGHI 227          
BLAST of DY257890 vs. ExPASy Swiss-Prot
Match: RL2_SULIK (50S ribosomal protein L2P OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 4.044e-13
Identity = 33/51 (64.71%), Postives = 39/51 (76.47%), Query Frame = 1
Query:    1 KFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 153
            K++VK   WP VRGVAMN V+HPHGGG HQ +   STV R+APPG+KVG I
Sbjct:  177 KYKVKAKKWPIVRGVAMNVVDHPHGGGLHQSVSRPSTVSRNAPPGRKVGHI 227          
BLAST of DY257890 vs. ExPASy Swiss-Prot
Match: RL2_SULIA (50S ribosomal protein L2P OS=Sulfolobus islandicus (strain M.16.27) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 4.044e-13
Identity = 33/51 (64.71%), Postives = 39/51 (76.47%), Query Frame = 1
Query:    1 KFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 153
            K++VK   WP VRGVAMN V+HPHGGG HQ +   STV R+APPG+KVG I
Sbjct:  177 KYKVKAKKWPIVRGVAMNVVDHPHGGGLHQSVSRPSTVSRNAPPGRKVGHI 227          
BLAST of DY257890 vs. ExPASy Swiss-Prot
Match: RL2_ARCFU (50S ribosomal protein L2P OS=Archaeoglobus fulgidus GN=rpl2p PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 4.044e-13
Identity = 32/51 (62.75%), Postives = 38/51 (74.51%), Query Frame = 1
Query:    1 KFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 153
            K + K   WP+VRGVAMN V+HP GGG HQH+G   TV R+APPG+KVG I
Sbjct:  178 KMKSKAAKWPRVRGVAMNAVDHPFGGGKHQHVGKPKTVSRNAPPGRKVGSI 228          
BLAST of DY257890 vs. ExPASy Swiss-Prot
Match: RL2_METS5 (50S ribosomal protein L2P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.898e-13
Identity = 32/51 (62.75%), Postives = 38/51 (74.51%), Query Frame = 1
Query:    1 KFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 153
            K++VK   WP VRGVAMN V HPHGGG HQ +  +STV R+ PPG+KVG I
Sbjct:  177 KYKVKATKWPDVRGVAMNVVSHPHGGGLHQSVSRSSTVARNTPPGRKVGHI 227          
BLAST of DY257890 vs. ExPASy Swiss-Prot
Match: RL2_SULAC (50S ribosomal protein L2P OS=Sulfolobus acidocaldarius GN=rpl2p PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 9.009e-13
Identity = 33/51 (64.71%), Postives = 38/51 (74.51%), Query Frame = 1
Query:    1 KFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 153
            K+RV+   WP VRGVAMN V HPHGGG HQ +   STV R+APPG+KVG I
Sbjct:  177 KYRVRAVKWPVVRGVAMNAVSHPHGGGLHQSVSRPSTVSRNAPPGRKVGHI 227          
The following BLAST results are available for this feature:
BLAST of DY257890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
RL2_SULSO4.044e-1364.7150S ribosomal protein L2P OS=Sulfolobus solfataric... [more]
RL2_SULIY4.044e-1364.7150S ribosomal protein L2P OS=Sulfolobus islandicus... [more]
RL2_SULIN4.044e-1364.7150S ribosomal protein L2P OS=Sulfolobus islandicus... [more]
RL2_SULIM4.044e-1364.7150S ribosomal protein L2P OS=Sulfolobus islandicus... [more]
RL2_SULIL4.044e-1364.7150S ribosomal protein L2P OS=Sulfolobus islandicus... [more]
RL2_SULIK4.044e-1364.7150S ribosomal protein L2P OS=Sulfolobus islandicus... [more]
RL2_SULIA4.044e-1364.7150S ribosomal protein L2P OS=Sulfolobus islandicus... [more]
RL2_ARCFU4.044e-1362.7550S ribosomal protein L2P OS=Archaeoglobus fulgidu... [more]
RL2_METS56.898e-1362.7550S ribosomal protein L2P OS=Metallosphaera sedula... [more]
RL2_SULAC9.009e-1364.7150S ribosomal protein L2P OS=Sulfolobus acidocalda... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2AB07ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257890 ID=DY257890; Name=DY257890; organism=Citrus clementina; type=EST; length=438bp
AAATTCAGAGTGAAGCGAAACTGCTGGCCTAAGGTGCGTGGTGTGGCCAT
GAACCCAGTGGAGCATCCTCATGGAGGAGGTAACCACCAGCACATTGGTC
ATGCTAGCACTGTTAGGCGTGATGCTCCCCCTGGCCAGAAGGTTGGTCTT
ATTGCAGCCAGGAGGACTGGTCGGCTCAGAGGACAAGCTGCTGCCACTGC
AGCCAAGGCCGACAAGGCTTAAATCCTTTGTGTTACCACAAATCGTCTCT
CTATCGCGATCTGTCATTTTACTTTTCCTGCTGCATCATTACCTTGGAAA
AATTTGTTGAGATTTGGATCTCTGGGATGATCCTGATGTTAAATTATGTT
GGCTTAAAGTTTAGCTTAATTTGCTCTTATCCTAAACTTTAGTTGATTTT
GATATTTTTGGATATATTAATGGATGCCTTCATCGAAT
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