DY257890

Overview
NameDY257890
Unique NameDY257890
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length438
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12665 contig Ccv1_Contig12665:656..1093. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257890 vs. ExPASy Swiss-Prot
Match: RL2_METTP (50S ribosomal protein L2P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.699e-11
Identity = 31/51 (60.78%), Postives = 35/51 (68.63%), Query Frame = 1
Query:    1 KFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 153
            K+R K   WP+VRGVAMN V+HP GGG  QH G   TV R  PPG+KVG I
Sbjct:  178 KYRSKAVKWPRVRGVAMNAVDHPFGGGGRQHPGRPKTVSRGTPPGRKVGSI 228          
BLAST of DY257890 vs. ExPASy Swiss-Prot
Match: RL2_PICTO (50S ribosomal protein L2P OS=Picrophilus torridus GN=rpl2p PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.219e-11
Identity = 29/38 (76.32%), Postives = 31/38 (81.58%), Query Frame = 1
Query:   34 VRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVG 147
            VRGVAMN V HPHGGGNHQH+G  STV R  PPG+KVG
Sbjct:  184 VRGVAMNAVNHPHGGGNHQHVGRPSTVGRGTPPGRKVG 221          
BLAST of DY257890 vs. ExPASy Swiss-Prot
Match: RL2_CENSY (50S ribosomal protein L2P OS=Cenarchaeum symbiosum GN=rpl2p PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.219e-11
Identity = 31/51 (60.78%), Postives = 36/51 (70.59%), Query Frame = 1
Query:    1 KFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 153
            +FR K   +P VRGVA     HPHGGG HQH+G +STV R+APPG KVG I
Sbjct:  179 RFRSKGRKYPIVRGVAQAAYVHPHGGGRHQHVGQSSTVSRNAPPGAKVGSI 229          
BLAST of DY257890 vs. ExPASy Swiss-Prot
Match: RL2_METKA (50S ribosomal protein L2P OS=Methanopyrus kandleri GN=rpl2p PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.898e-11
Identity = 31/49 (63.27%), Postives = 35/49 (71.43%), Query Frame = 1
Query:    7 RVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 153
            R K   WPKVRGVAMN V+HP GGGNHQ  G  +T+ R  PPG+KVG I
Sbjct:  184 RSKGGKWPKVRGVAMNAVDHPFGGGNHQSPGKPTTIARGDPPGRKVGHI 232          
BLAST of DY257890 vs. ExPASy Swiss-Prot
Match: RL2_NITMS (50S ribosomal protein L2P OS=Nitrosopumilus maritimus (strain SCM1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.785e-11
Identity = 30/50 (60.00%), Postives = 34/50 (68.00%), Query Frame = 1
Query:    4 FRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 153
            F+ K   +P VRGVA     HPHGGG HQH+G +STV RD PPG KVG I
Sbjct:  181 FKAKGKKYPIVRGVAQAAYVHPHGGGRHQHVGQSSTVSRDTPPGAKVGSI 230          
BLAST of DY257890 vs. ExPASy Swiss-Prot
Match: RL2_HALWD (50S ribosomal protein L2P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.785e-11
Identity = 29/49 (59.18%), Postives = 35/49 (71.43%), Query Frame = 1
Query:    1 KFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVG 147
            K + +   WP+VRGVAMN V+HP GGG  QH G   +V RDAPPG+KVG
Sbjct:  179 KMKARGIKWPRVRGVAMNAVDHPFGGGGRQHPGQPKSVSRDAPPGRKVG 227          
BLAST of DY257890 vs. ExPASy Swiss-Prot
Match: RL8_ENCCU (60S ribosomal protein L8 OS=Encephalitozoon cuniculi GN=RPL8 PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 8.432e-11
Identity = 29/52 (55.77%), Postives = 40/52 (76.92%), Query Frame = 1
Query:    1 KFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTV-RRDAPPGQKVGLI 153
            K + + + +P+VRGVAMNPVEH HGGGNHQH+G  +TV ++D    QK+GL+
Sbjct:  174 KAKARGHVFPRVRGVAMNPVEHIHGGGNHQHVGKPTTVSKKDISQEQKIGLV 225          
BLAST of DY257890 vs. ExPASy Swiss-Prot
Match: RL2_METS3 (50S ribosomal protein L2P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 8.432e-11
Identity = 30/50 (60.00%), Postives = 36/50 (72.00%), Query Frame = 1
Query:    4 FRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 153
            ++ K   +  VRGVAMN V+HPHGGGN QH G  +TV R APPG+KVG I
Sbjct:  183 YKAKGKKFMTVRGVAMNAVDHPHGGGNRQHPGRPTTVSRHAPPGRKVGSI 232          
BLAST of DY257890 vs. ExPASy Swiss-Prot
Match: RL2_METLZ (50S ribosomal protein L2P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 8.432e-11
Identity = 28/51 (54.90%), Postives = 34/51 (66.67%), Query Frame = 1
Query:    1 KFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 153
            K +     WP+VRGVAMN ++HP GGG HQH G   TV R A PG+KVG +
Sbjct:  181 KMKTSATRWPRVRGVAMNVIDHPFGGGGHQHPGKPKTVARGASPGRKVGSV 231          
The following BLAST results are available for this feature:
BLAST of DY257890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
RL2_METTP1.699e-1160.7850S ribosomal protein L2P OS=Methanosaeta thermoph... [more]
RL2_PICTO2.219e-1176.3250S ribosomal protein L2P OS=Picrophilus torridus ... [more]
RL2_CENSY2.219e-1160.7850S ribosomal protein L2P OS=Cenarchaeum symbiosum... [more]
RL2_METKA2.898e-1163.2750S ribosomal protein L2P OS=Methanopyrus kandleri... [more]
RL2_NITMS3.785e-1160.0050S ribosomal protein L2P OS=Nitrosopumilus mariti... [more]
RL2_HALWD3.785e-1159.1850S ribosomal protein L2P OS=Haloquadratum walsbyi... [more]
RL8_ENCCU8.432e-1155.7760S ribosomal protein L8 OS=Encephalitozoon cunicu... [more]
RL2_METS38.432e-1160.0050S ribosomal protein L2P OS=Methanobrevibacter sm... [more]
RL2_METLZ8.432e-1154.9050S ribosomal protein L2P OS=Methanocorpusculum la... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2AB07ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257890 ID=DY257890; Name=DY257890; organism=Citrus clementina; type=EST; length=438bp
AAATTCAGAGTGAAGCGAAACTGCTGGCCTAAGGTGCGTGGTGTGGCCAT
GAACCCAGTGGAGCATCCTCATGGAGGAGGTAACCACCAGCACATTGGTC
ATGCTAGCACTGTTAGGCGTGATGCTCCCCCTGGCCAGAAGGTTGGTCTT
ATTGCAGCCAGGAGGACTGGTCGGCTCAGAGGACAAGCTGCTGCCACTGC
AGCCAAGGCCGACAAGGCTTAAATCCTTTGTGTTACCACAAATCGTCTCT
CTATCGCGATCTGTCATTTTACTTTTCCTGCTGCATCATTACCTTGGAAA
AATTTGTTGAGATTTGGATCTCTGGGATGATCCTGATGTTAAATTATGTT
GGCTTAAAGTTTAGCTTAATTTGCTCTTATCCTAAACTTTAGTTGATTTT
GATATTTTTGGATATATTAATGGATGCCTTCATCGAAT
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