DY257962

Overview
NameDY257962
Unique NameDY257962
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length476
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257962 vs. ExPASy Swiss-Prot
Match: G3PC_CHLRE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Chlamydomonas reinhardtii GN=GAPC PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.677e-12
Identity = 33/48 (68.75%), Postives = 37/48 (77.08%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYNNEWGYSTRVVDLIVHMAK 145
            FV D  S   DAKAGI LS  FVKLV+WY+NEWGYS RVVDL +H+AK
Sbjct:  288 FVTDPASCTVDAKAGIMLSPTFVKLVAWYDNEWGYSNRVVDLALHVAK 335          
BLAST of DY257962 vs. ExPASy Swiss-Prot
Match: G3P1_TRIKO (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Trichoderma koningii GN=gpd1 PE=1 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 5.677e-12
Identity = 32/45 (71.11%), Postives = 40/45 (88.89%), Query Frame = 2
Query:   11 DSRSSIFDAKAGIALSKKFVKLVSWYNNEWGYSTRVVDLIVHMAK 145
            D  SS FDAKAGIAL+K FVK++SWY+NE+GYS RVVDLIV+++K
Sbjct:  287 DPHSSTFDAKAGIALNKNFVKVMSWYDNEYGYSRRVVDLIVYVSK 331          
BLAST of DY257962 vs. ExPASy Swiss-Prot
Match: G3P_ERYGR (Glyceraldehyde-3-phosphate dehydrogenase OS=Erysiphe graminis subsp. hordei GN=GPD PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 7.415e-12
Identity = 30/46 (65.22%), Postives = 40/46 (86.96%), Query Frame = 2
Query:    5 VGDSRSSIFDAKAGIALSKKFVKLVSWYNNEWGYSTRVVDLIVHMA 142
            +G++ SSIFDAKAGI+L+  FVKLV+WY+NEW YS RV+DLI ++A
Sbjct:  287 IGNNHSSIFDAKAGISLNDNFVKLVAWYDNEWAYSRRVIDLISYIA 332          
BLAST of DY257962 vs. ExPASy Swiss-Prot
Match: G3P_CRYNE (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryptococcus neoformans GN=GPD PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 7.415e-12
Identity = 32/47 (68.09%), Postives = 40/47 (85.11%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYNNEWGYSTRVVDLIVHMA 142
            F+G + SSIFDA+AGIAL+  FVKLVSWY+NE+GYS RV DLI ++A
Sbjct:  286 FIGSTESSIFDAQAGIALNANFVKLVSWYDNEYGYSRRVCDLISYIA 332          
BLAST of DY257962 vs. ExPASy Swiss-Prot
Match: G3P_COCIM (Glyceraldehyde-3-phosphate dehydrogenase OS=Coccidioides immitis GN=GPD PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 7.415e-12
Identity = 30/45 (66.67%), Postives = 38/45 (84.44%), Query Frame = 2
Query:    8 GDSRSSIFDAKAGIALSKKFVKLVSWYNNEWGYSTRVVDLIVHMA 142
            GD+ S IFDA AGIAL+  F+KLV+WY+NEWGYS RV+DLI ++A
Sbjct:  287 GDTHSCIFDATAGIALNDHFIKLVAWYDNEWGYSRRVIDLIAYIA 331          
BLAST of DY257962 vs. ExPASy Swiss-Prot
Match: G3PT_DANRE (Glyceraldehyde 3-phosphate dehydrogenase, testis-specific OS=Danio rerio GN=gapdhs PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 7.415e-12
Identity = 31/46 (67.39%), Postives = 40/46 (86.96%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYNNEWGYSTRVVDLIVHM 139
            FVGD+ SSIFDA AGI+L+  FVKL+SWY+NE+GYS RV DL+++M
Sbjct:  286 FVGDTHSSIFDAGAGISLNDNFVKLISWYDNEFGYSHRVADLLMYM 331          
BLAST of DY257962 vs. ExPASy Swiss-Prot
Match: G3P_HUMAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Homo sapiens GN=GAPDH PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 9.684e-12
Identity = 32/50 (64.00%), Postives = 39/50 (78.00%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYNNEWGYSTRVVDLIVHMAKTQ 151
            F  D+ SS FDA AGIAL+  FVKL+SWY+NE+GYS RVVDL+ HMA  +
Sbjct:  286 FNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMAHMASKE 335          
BLAST of DY257962 vs. ExPASy Swiss-Prot
Match: G3P_FELCA (Glyceraldehyde-3-phosphate dehydrogenase OS=Felis catus GN=GAPDH PE=2 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 9.684e-12
Identity = 32/50 (64.00%), Postives = 39/50 (78.00%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYNNEWGYSTRVVDLIVHMAKTQ 151
            F  D+ SS FDA AGIAL+  FVKL+SWY+NE+GYS RVVDL+ HMA  +
Sbjct:  284 FNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMAHMASKE 333          
BLAST of DY257962 vs. ExPASy Swiss-Prot
Match: G3P2_AGABI (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Agaricus bisporus GN=gpd2 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 9.684e-12
Identity = 29/48 (60.42%), Postives = 39/48 (81.25%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYNNEWGYSTRVVDLIVHMAK 145
            F+ D+ S +FDAKAGI LS  FVKL++WY+NEWGYS RV +L+ ++AK
Sbjct:  284 FISDNNSCVFDAKAGIQLSPNFVKLIAWYDNEWGYSRRVCNLLQYVAK 331          
BLAST of DY257962 vs. ExPASy Swiss-Prot
Match: G3P1_CANGA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Candida glabrata GN=GPD1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 9.684e-12
Identity = 31/48 (64.58%), Postives = 41/48 (85.42%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYNNEWGYSTRVVDLIVHMAK 145
            F+GD+ SSIFDA AGI LS +FVKLVSWY+NE+G+S RVVD++  ++K
Sbjct:  284 FLGDTHSSIFDASAGIQLSPRFVKLVSWYDNEYGFSARVVDMVELVSK 331          
The following BLAST results are available for this feature:
BLAST of DY257962 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
G3PC_CHLRE5.677e-1268.75Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P1_TRIKO5.677e-1271.11Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Tric... [more]
G3P_ERYGR7.415e-1265.22Glyceraldehyde-3-phosphate dehydrogenase OS=Erysip... [more]
G3P_CRYNE7.415e-1268.09Glyceraldehyde-3-phosphate dehydrogenase OS=Crypto... [more]
G3P_COCIM7.415e-1266.67Glyceraldehyde-3-phosphate dehydrogenase OS=Coccid... [more]
G3PT_DANRE7.415e-1267.39Glyceraldehyde 3-phosphate dehydrogenase, testis-s... [more]
G3P_HUMAN9.684e-1264.00Glyceraldehyde-3-phosphate dehydrogenase OS=Homo s... [more]
G3P_FELCA9.684e-1264.00Glyceraldehyde-3-phosphate dehydrogenase OS=Felis ... [more]
G3P2_AGABI9.684e-1260.42Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Agar... [more]
G3P1_CANGA9.684e-1264.58Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Cand... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2BE08ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257962 ID=DY257962; Name=DY257962; organism=Citrus clementina; type=EST; length=476bp
CTTTGTTGGTGACAGTAGGTCAAGTATCTTTGATGCCAAGGCTGGTATTG
CTTTGAGTAAGAAATTTGTGAAGCTTGTCTCATGGTATAACAATGAGTGG
GGCTACAGTACTCGTGTGGTGGATTTGATTGTCCACATGGCGAAGACCCA
GTAACTTACTCGGCGTGGCTTGAGTATGTAACACGCTTAGTTGTGCTAAG
TGTGGTGTTTCTTTGCGCTAAATGTGGTGTTTCTTTGCGCTAAATGTGGT
GTTTGTGTTTCTATGTAGAGGGTCTGAGTTTAAATAAAATTGTTTCCAAG
ACATTATCCAGAGCCTTACCTGCTCATGCAGGGTTGTGCTTAGATTTTCC
CTTGTAGTATGCAAGAAGAGTTGGTGAACCAACTTATGTTTTGTTAGCGA
GAAAACAATTGTCTATTGGAAACTTGCTTTTATAATTTTTCATCTAGTTA
GTATCGAAGACCTGTTCTTCAGCCGT
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