DY257962

Overview
NameDY257962
Unique NameDY257962
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length476
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257962 vs. ExPASy Swiss-Prot
Match: G3PC_GRAVE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Gracilaria verrucosa GN=GAPC PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.951e-12
Identity = 31/50 (62.00%), Postives = 39/50 (78.00%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYNNEWGYSTRVVDLIVHMAKTQ 151
            F+ +  S +FDA AGI L+ +F KLV+WY+NEWGYS RVVDLI H+AK Q
Sbjct:  286 FIHEEASCVFDAGAGIMLNSRFCKLVAWYDNEWGYSNRVVDLIAHVAKLQ 335          
BLAST of DY257962 vs. ExPASy Swiss-Prot
Match: G3P_PICCI (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia ciferrii GN=GPD PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.548e-12
Identity = 32/47 (68.09%), Postives = 43/47 (91.49%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYNNEWGYSTRVVDLIVHMA 142
            F+ D+RSSIFDA+AGI LS +FVKL++WY+NE+GYSTRVVDL+ ++A
Sbjct:  285 FLTDNRSSIFDAEAGIWLSPRFVKLIAWYDNEYGYSTRVVDLLEYVA 331          
BLAST of DY257962 vs. ExPASy Swiss-Prot
Match: G3P1_DROME (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Drosophila melanogaster GN=Gapdh1 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 2.548e-12
Identity = 31/46 (67.39%), Postives = 40/46 (86.96%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYNNEWGYSTRVVDLIVHM 139
            F  D+ SS+FDAKAGI+L+ KFVKL+SWY+NE+GYS RV+DLI +M
Sbjct:  283 FFSDTHSSVFDAKAGISLNDKFVKLISWYDNEFGYSNRVIDLIKYM 328          
BLAST of DY257962 vs. ExPASy Swiss-Prot
Match: G3P1_AGABI (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Agaricus bisporus GN=gpd1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.548e-12
Identity = 31/48 (64.58%), Postives = 41/48 (85.42%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYNNEWGYSTRVVDLIVHMAK 145
            FVG + S IFDAKAGIAL+ +F+KLV+WY+NEWGY+ RV D +V++AK
Sbjct:  288 FVGSNYSMIFDAKAGIALNSRFMKLVAWYDNEWGYARRVCDEVVYVAK 335          
BLAST of DY257962 vs. ExPASy Swiss-Prot
Match: G3P_SPECI (Glyceraldehyde-3-phosphate dehydrogenase OS=Spermophilus citellus GN=GAPDH PE=2 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 3.328e-12
Identity = 33/50 (66.00%), Postives = 40/50 (80.00%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYNNEWGYSTRVVDLIVHMAKTQ 151
            F  D+ SS FDA AGIAL+  FVKL+SWY+NE+GYS RVVDL+VHMA  +
Sbjct:  284 FNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 333          
BLAST of DY257962 vs. ExPASy Swiss-Prot
Match: G3P_SHEEP (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Ovis aries GN=GAPDH PE=2 SV=4)

HSP 1 Score: 70.8626 bits (172), Expect = 3.328e-12
Identity = 33/50 (66.00%), Postives = 40/50 (80.00%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYNNEWGYSTRVVDLIVHMAKTQ 151
            F  D+ SS FDA AGIAL+  FVKL+SWY+NE+GYS RVVDL+VHMA  +
Sbjct:  273 FNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 322          
BLAST of DY257962 vs. ExPASy Swiss-Prot
Match: G3P_PIG (Glyceraldehyde-3-phosphate dehydrogenase OS=Sus scrofa GN=GAPDH PE=1 SV=4)

HSP 1 Score: 70.8626 bits (172), Expect = 3.328e-12
Identity = 33/50 (66.00%), Postives = 40/50 (80.00%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYNNEWGYSTRVVDLIVHMAKTQ 151
            F  D+ SS FDA AGIAL+  FVKL+SWY+NE+GYS RVVDL+VHMA  +
Sbjct:  284 FNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 333          
BLAST of DY257962 vs. ExPASy Swiss-Prot
Match: G3P_BOVIN (Glyceraldehyde-3-phosphate dehydrogenase OS=Bos taurus GN=GAPDH PE=1 SV=4)

HSP 1 Score: 70.8626 bits (172), Expect = 3.328e-12
Identity = 33/50 (66.00%), Postives = 40/50 (80.00%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYNNEWGYSTRVVDLIVHMAKTQ 151
            F  D+ SS FDA AGIAL+  FVKL+SWY+NE+GYS RVVDL+VHMA  +
Sbjct:  284 FNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 333          
BLAST of DY257962 vs. ExPASy Swiss-Prot
Match: G3P1_RHIRA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Rhizomucor racemosus GN=GPD1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.328e-12
Identity = 32/48 (66.67%), Postives = 40/48 (83.33%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYNNEWGYSTRVVDLIVHMAK 145
            FVG+  SS+FDA AGI L+  FVKL++WY+NE+GYS RVVDL+VH AK
Sbjct:  285 FVGEVCSSVFDAAAGIQLTPTFVKLIAWYDNEYGYSNRVVDLLVHAAK 332          
BLAST of DY257962 vs. ExPASy Swiss-Prot
Match: G3P_PHARH (Glyceraldehyde-3-phosphate dehydrogenase OS=Phaffia rhodozyma GN=GPD PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.677e-12
Identity = 31/47 (65.96%), Postives = 38/47 (80.85%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYNNEWGYSTRVVDLIVHMA 142
            F GDS SS FDA+ GI+L+  FVKLVSWY+NEWGYS RV DL+ ++A
Sbjct:  286 FTGDSASSTFDAQGGISLNGNFVKLVSWYDNEWGYSARVCDLVSYIA 332          
The following BLAST results are available for this feature:
BLAST of DY257962 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
G3PC_GRAVE1.951e-1262.00Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_PICCI2.548e-1268.09Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3P1_DROME2.548e-1267.39Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Dros... [more]
G3P1_AGABI2.548e-1264.58Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Agar... [more]
G3P_SPECI3.328e-1266.00Glyceraldehyde-3-phosphate dehydrogenase OS=Spermo... [more]
G3P_SHEEP3.328e-1266.00Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P_PIG3.328e-1266.00Glyceraldehyde-3-phosphate dehydrogenase OS=Sus sc... [more]
G3P_BOVIN3.328e-1266.00Glyceraldehyde-3-phosphate dehydrogenase OS=Bos ta... [more]
G3P1_RHIRA3.328e-1266.67Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Rhiz... [more]
G3P_PHARH5.677e-1265.96Glyceraldehyde-3-phosphate dehydrogenase OS=Phaffi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2BE08ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257962 ID=DY257962; Name=DY257962; organism=Citrus clementina; type=EST; length=476bp
CTTTGTTGGTGACAGTAGGTCAAGTATCTTTGATGCCAAGGCTGGTATTG
CTTTGAGTAAGAAATTTGTGAAGCTTGTCTCATGGTATAACAATGAGTGG
GGCTACAGTACTCGTGTGGTGGATTTGATTGTCCACATGGCGAAGACCCA
GTAACTTACTCGGCGTGGCTTGAGTATGTAACACGCTTAGTTGTGCTAAG
TGTGGTGTTTCTTTGCGCTAAATGTGGTGTTTCTTTGCGCTAAATGTGGT
GTTTGTGTTTCTATGTAGAGGGTCTGAGTTTAAATAAAATTGTTTCCAAG
ACATTATCCAGAGCCTTACCTGCTCATGCAGGGTTGTGCTTAGATTTTCC
CTTGTAGTATGCAAGAAGAGTTGGTGAACCAACTTATGTTTTGTTAGCGA
GAAAACAATTGTCTATTGGAAACTTGCTTTTATAATTTTTCATCTAGTTA
GTATCGAAGACCTGTTCTTCAGCCGT
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