DY258048

Overview
NameDY258048
Unique NameDY258048
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1117
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258048 vs. ExPASy Swiss-Prot
Match: SYW_SULAC (Tryptophanyl-tRNA synthetase OS=Sulfolobus acidocaldarius GN=trpS PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 4.693e-48
Identity = 106/253 (41.90%), Postives = 147/253 (58.10%), Query Frame = 3
Query:   15 SVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLE-DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAF 770
            ++++++  + EN  DIIA GFD  KTFIF D +Y+    Y   VK+AK +T+N+V   FG     +IG + +P +Q V              +  RCLIP  IDQDPY+R+ RD+A  +GY K A I S F P L G  GKMS+S P +AIY+TD           YAFSGGQ +VELHRK G N ++D+  ++L  F E DD  +  I+++Y +G MLTGE+KQ L   L   +E H+  R    D +V+ F
Sbjct:  125 TLDQTKEWSYENILDIIAVGFDPNKTFIFQDTEYIKN-MYPLSVKIAKKLTFNEVRATFGLDTSSNIGIIFYPALQIVPTMF----------EKRRCLIPAGIDQDPYWRLQRDIAESLGYFKAAQIHSKFLPPLTGPEGKMSSSQPETAIYLTDDPKTVERKIMKYAFSGGQATVELHRKYGGNPDIDVAFQWLYMFFEPDDQRIRKIEEDYRSGAMLTGELKQILVDKLNAFLEEHREKREKAKD-LVNVF 365          
BLAST of DY258048 vs. ExPASy Swiss-Prot
Match: SYW_SULSO (Tryptophanyl-tRNA synthetase OS=Sulfolobus solfataricus GN=trpS PE=3 SV=2)

HSP 1 Score: 191.43 bits (485), Expect = 8.006e-48
Identity = 105/253 (41.50%), Postives = 149/253 (58.89%), Query Frame = 3
Query:   15 SVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYL-SFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAF 770
            ++++++  A +N  DIIA GF+  KTFIF D +Y+    Y   VK+AK +T+++V   FG     +IG + +P +Q                +  RCLIP  IDQDPY+R+ RD+A  +GY+K A I S F P L G  GKMS+S+P +AIY+ D           YAFSGGQ ++ELHRK G N E+D+P ++L  FF EDD  ++ I++EY +G MLTGE+KQ L   L   +E H+  R     E+V  F
Sbjct:  124 TLDQTRSWAYDNILDIIAVGFNPDKTFIFQDTEYIRN-MYPITVKIAKKLTFSEVRATFGLDASSNIGLIFYPALQIAPTMF----------EKKRCLIPAGIDQDPYWRLQRDIAESLGYYKAAQIHSKFLPPLTGPEGKMSSSNPETAIYLVDDPKTVERKIMKYAFSGGQPTIELHRKYGGNPEIDVPFQWLYYFFEEDDNRIKEIEEEYRSGKMLTGELKQILIDKLNNFLEEHR-RRREEAKELVHVF 364          
BLAST of DY258048 vs. ExPASy Swiss-Prot
Match: SYW_SULTO (Tryptophanyl-tRNA synthetase OS=Sulfolobus tokodaii GN=trpS PE=3 SV=2)

HSP 1 Score: 186.037 bits (471), Expect = 3.363e-46
Identity = 97/242 (40.08%), Postives = 147/242 (60.74%), Query Frame = 3
Query:   15 SVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLE-DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVAR 737
            +++++++ A +N  DIIA GF+  KTFIF D +Y+    Y   +K+AK +T+++V   FG     +IG + +P +Q                +  RCLIP  IDQDPY+R+ RD+A  +GY+K A I S F P L G  GKMS+S P +AIY+TD           YAFSGGQ ++ELHRK G N ++D+  ++L  F E DD +++ I+++Y +G +LTGE+KQ L + L + +E H+  R
Sbjct:  125 TLDQTRQWAYDNILDIIAVGFNPDKTFIFQDTEYIRN-MYPIAIKIAKKLTFSEVRATFGLDTSSNIGIIWYPALQIAPTMF----------EKRRCLIPAGIDQDPYWRLQRDIAESLGYYKAAQIHSKFLPPLTGPEGKMSSSQPETAIYLTDDPKTVERKIMKYAFSGGQPTIELHRKYGGNPDIDVSFQWLYMFFEPDDNKIKKIEEDYRSGALLTGELKQILIEKLNDFLEEHRQKR 355          
BLAST of DY258048 vs. ExPASy Swiss-Prot
Match: SYW_PYRFU (Tryptophanyl-tRNA synthetase OS=Pyrococcus furiosus GN=trpS PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 2.335e-39
Identity = 95/256 (37.11%), Postives = 142/256 (55.47%), Query Frame = 3
Query:    6 KNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLE-DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAF 770
            +NL+ E+++  A +N  DIIA GFD  KTFIF + ++     Y+  + +AK + ++    +FGFT +  IG + FP +QA               +  RCLIP AIDQDPY+R+ RD A  +GY+K A + S FFP L G  GKMSAS P +AIY+TD+          +A +GGQ +++  R+ G N E  +  K+L  F E DD +L         G +L GE K+ L + + E ++ HQ  R    +++V+ F
Sbjct:  122 ENLTFEDTKYWAYQNILDIIAVGFDPDKTFIFQNSEFT--KIYEMAIPIAKKINFSMAKAVFGFTEQSKIGMIFFPAIQAAPTFF----------EKKRCLIPAAIDQDPYWRLQRDFAESLGYYKTAALHSKFFPPLTGLEGKMSASKPETAIYLTDNPEEAGKKIWKFALTGGQPTLKEQREKGGNPEKCVVFKWLEIFFEPDDKKLMERYYACKNGELLCGECKRYLIQRVQEFLKEHQEKRKK-AEKLVEKF 364          
BLAST of DY258048 vs. ExPASy Swiss-Prot
Match: SYW_PYRAB (Tryptophanyl-tRNA synthetase OS=Pyrococcus abyssi GN=trpS PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 7.510e-38
Identity = 91/247 (36.84%), Postives = 136/247 (55.06%), Query Frame = 3
Query:    6 KNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGA---GGMLTGEVKQRLAKVLTELVERHQVAR 737
            +NL+ E+++  A EN  DIIA GFD  KTFIF + ++     Y+  + +AK + ++    +FGFT +  IG + FP +Q                +  RCLIP AIDQDPY+R+ RD A  +GY+K A I S F P+L   +GKMSAS P +AIY+TDS          +A +GG+ +++  R+ G   E  +  K+L  F E+D   + +K+ Y A   G +  GE K+ L   + E ++ HQ  R
Sbjct:  122 ENLTFEDTKHWAYENILDIIAVGFDPDKTFIFQNSEFT--KIYEMAIPIAKKINFSMAKAVFGFTEQSKIGMIFFPAIQIAPTFF----------EKRRCLIPAAIDQDPYWRLQRDFAESLGYYKTAAIHSKFVPSLTSLSGKMSASKPETAIYLTDSPEDVEKKVWKFALTGGRPTLKEQREKGGEPEKCVVFKWLEIFFEEDD--KKLKERYYACKNGELTCGECKRYLISKIQEFLKEHQKRR 354          
BLAST of DY258048 vs. ExPASy Swiss-Prot
Match: SYW_THEON (Tryptophanyl-tRNA synthetase OS=Thermococcus onnurineus (strain NA1) GN=trpS PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.281e-37
Identity = 91/243 (37.45%), Postives = 131/243 (53.91%), Query Frame = 3
Query:   12 LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLS-FFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVAR 737
            L+ E+++  A +N  DIIA GFD  +TFIF D ++     Y+  + +AK + ++    +FGFT +  IG + +P +QA               +  RCLIP AIDQDPY+R+ RD A  +GY+K A I S F P L G  GKMSAS P +AIY+TD           YA +GG+ + +  R+ G   E  +  K+L  FF EDD +L         G +L G+ K+ L K + E ++ HQ  R
Sbjct:  123 LTFEDTKYWAYQNILDIIAVGFDPDRTFIFQDSEFT--KIYEMAIPIAKKINFSMAKAVFGFTEQSKIGMIFYPAIQAAPTFF----------EKKRCLIPAAIDQDPYWRLQRDFAESLGYYKTAAIHSKFVPGLMGLEGKMSASKPETAIYLTDDPEEVGRKIWKYALTGGRATAKEQREKGGEPEKCVVFKWLEIFFEEDDKKLMERYHACKNGELLCGQCKRYLIKKVQEFLKEHQKKR 353          
BLAST of DY258048 vs. ExPASy Swiss-Prot
Match: SYW_PYRHO (Tryptophanyl-tRNA synthetase OS=Pyrococcus horikoshii GN=trpS PE=1 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 2.185e-37
Identity = 90/258 (34.88%), Postives = 142/258 (55.04%), Query Frame = 3
Query:    6 KNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGA---GGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAF 770
            +NL+ ++++R A +N  DIIA GFD  KTFIF + ++     Y+  + +AK + ++    +FGFT +  IG + FP +Q                +  RCLIP AIDQDPY+R+ RD A  +GY+K A + S F P+L   +GKMSAS P +AIY+TDS          +  +GG+ +++  R+ G   E  +  K+L  F E+D   + +K+ Y A   G +  GE K+ L   + E ++ HQ  R    +++V+ F
Sbjct:  122 ENLTFDDTKRWAYDNILDIIAVGFDPDKTFIFQNSEFT--KIYEMAIPIAKKINFSMAKAVFGFTEQSKIGMIFFPAIQIAPTFF----------ERKRCLIPAAIDQDPYWRLQRDFAESLGYYKTAALHSKFVPSLTSLSGKMSASKPETAIYLTDSPEDVEKKVWKFTLTGGRPTLKEQREKGGEPEKCVVFKWLEIFFEEDD--KKLKERYYACKNGELTCGECKRYLISKIQEFLKEHQ-RRRKKAEKLVEKF 364          
BLAST of DY258048 vs. ExPASy Swiss-Prot
Match: SYW_PYRKO (Tryptophanyl-tRNA synthetase OS=Pyrococcus kodakaraensis GN=trpS PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 8.304e-37
Identity = 88/245 (35.92%), Postives = 132/245 (53.88%), Query Frame = 3
Query:    6 KNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLE-DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVAR 737
            + LS E+++R A EN  DIIA GFD  KTFIF + ++     Y+  + +AK + ++    +FGF  +  IG + +P +QA               +  RCLIP AIDQDPY+R+ RD A  +GY+K A I S F P L    GKMSAS P +A+Y+TD           +A +GGQ +++  R+ G N E  +  K+   F E DD +L    +   AG +  G+ K+ L + + + ++ HQ  R
Sbjct:  121 EKLSFEDTKRWAYENILDIIAVGFDPDKTFIFQNSEFT--KIYEMALPIAKKINFSMARAVFGFNEQSKIGMIFYPAIQAAPTFF----------EKKRCLIPAAIDQDPYWRLQRDFAESLGYYKTAAIHSKFVPGLTSLEGKMSASKPETAVYLTDDPEEAGKKIWKFALTGGQPTLKEQREKGGNPEKCVVFKWFEIFFEPDDEKLMERYRACKAGELTCGQCKRELIERVQKFLKEHQKKR 353          
BLAST of DY258048 vs. ExPASy Swiss-Prot
Match: SYW_PYRCJ (Tryptophanyl-tRNA synthetase OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=trpS PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 8.304e-37
Identity = 100/253 (39.53%), Postives = 135/253 (53.36%), Query Frame = 3
Query:   12 LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAF 770
            + +EE+ + A ENA D+IA GF   K  +  D   +    Y    KVAK +T+N V   FGFT   +IG + +P +Q                     LIPCAIDQDPYFR+ RD+A  +GY KPA + S F  AL GE+ KMSAS+PNSAIY  D            A++GG+ + E  R+LG N +V     Y   F  DDA +E I     +G +L GE KQ L + + + V++HQ AR    D+ VDA+
Sbjct:  123 MRLEEATKWAYENALDVIALGFTPDKLHLIIDTKDIK-PLYPIAAKVAKKLTWNTVKATFGFTDSTNIGLIFYPSLQIAVAFLPTELHGRPTP----VLIPCAIDQDPYFRLARDIAESLGYPKPATLYSKFIMALTGES-KMSASNPNSAIYTIDDEKTIRRKIAN-AYTGGRPTAEEQRRLGGNPDVCPVYHYHMLFDPDDASVEKIYHSCKSGALLCGECKQMLYEKIRKFVKQHQEAREKARDK-VDAY 367          
BLAST of DY258048 vs. ExPASy Swiss-Prot
Match: SYW_THESM (Tryptophanyl-tRNA synthetase OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=trpS PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 1.085e-36
Identity = 93/252 (36.90%), Postives = 133/252 (52.78%), Query Frame = 3
Query:   12 LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGA---GGMLTGEVKQRLAKVLTELVERHQVARAAVTDEM 758
            L+ E ++R A EN  DIIA GFD  KTFIF D ++     Y+  + +AK VTY+    +FGF  +  IG + FP +QA               +  R LIP AIDQDPY+R+ RD A  +GY+K A + S F P L G  GKMSAS P +AIY+TD           YA +GG+ + +  R+LG   +  +  K+L  F E D   + + + Y A   G +L G+ K+ L + +   ++ HQ  R     E+
Sbjct:  123 LTFEGTKRWAYENILDIIAVGFDPDKTFIFQDSEFT--KIYEMAIPIAKKVTYSMAKAVFGFNEQSKIGMIFFPAIQAAPTFF----------EEKRSLIPAAIDQDPYWRIQRDFAESLGYYKTAALHSKFVPGLMGLGGKMSASKPETAIYLTDDPEEAGKKIWKYALTGGRATAKEQRELGGEPDKCVVFKWLEIFFEPDE--KKLLERYIACKNGEILCGQCKRYLIEKVQNFLKEHQEKREKAKKEI 360          
The following BLAST results are available for this feature:
BLAST of DY258048 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
SYW_SULAC4.693e-4841.90Tryptophanyl-tRNA synthetase OS=Sulfolobus acidoca... [more]
SYW_SULSO8.006e-4841.50Tryptophanyl-tRNA synthetase OS=Sulfolobus solfata... [more]
SYW_SULTO3.363e-4640.08Tryptophanyl-tRNA synthetase OS=Sulfolobus tokodai... [more]
SYW_PYRFU2.335e-3937.11Tryptophanyl-tRNA synthetase OS=Pyrococcus furiosu... [more]
SYW_PYRAB7.510e-3836.84Tryptophanyl-tRNA synthetase OS=Pyrococcus abyssi ... [more]
SYW_THEON1.281e-3737.45Tryptophanyl-tRNA synthetase OS=Thermococcus onnur... [more]
SYW_PYRHO2.185e-3734.88Tryptophanyl-tRNA synthetase OS=Pyrococcus horikos... [more]
SYW_PYRKO8.304e-3735.92Tryptophanyl-tRNA synthetase OS=Pyrococcus kodakar... [more]
SYW_PYRCJ8.304e-3739.53Tryptophanyl-tRNA synthetase OS=Pyrobaculum calidi... [more]
SYW_THESM1.085e-3636.90Tryptophanyl-tRNA synthetase OS=Thermococcus sibir... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAB2DB03ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258048 ID=DY258048; Name=DY258048; organism=Citrus clementina; type=EST; length=1117bp
GGTGGAAAAATCTTTCTGTTGAGGAGAGTCAAAGACTTGCAAGGGAAAAT
GCAAAAGACATAATTGCCTGTGGTTTTGATGTAACAAAGACCTTTATCTT
CTCTGATTTTGATTATGTCGGTGGTGCCTTCTACAAGAACATGGTGAAGG
TTGCGAAGTGTGTCACATATAACAAGGTGGTTGGCATATTTGGCTTCACT
GGTGAAGATCATATTGGAAAAGTTAGTTTTCCACCAGTTCAGGCGGTTCC
ATCATTTCCAAGTTCTTTCCCACACCTTTTCTCAGGCAAGGATCACCTTC
GTTGCTTAATTCCTTGCGCCATTGACCAGGACCCTTACTTCAGAATGACA
CGGGATGTTGCTCCTCGGATAGGTTATCACAAGCCTGCATTAATTGAGTC
GTCATTTTTCCCTGCATTGCAGGGGGAGACAGGAAAAATGTCAGCTAGTG
ATCCTAATTCTGCCATATATGTTACTGATTCTGCGAAGGCTATTAAGAAC
AAGATAAACAAGTATGCATTTTCTGGCGGACAAGAAAGTGTGGAATTACA
TAGAAAATTAGGGGCAAATCTTGAGGTAGATATACCAGTAAAATATCTAA
GTTTTTTCCTAGAGGATGATGCAGAACTAGAACACATTAAAAAGGAGTAT
GGTGCAGGTGGCATGCTAACGGGGGAAGTTAAGCAACGCCTTGCTAAAGT
TTTGACTGAATTGGTGGAAAGACACCAGGTGGCTCGTGCTGCTGTAACTG
ATGAGATGGTCGATGCATTTATGGCAGTGAGACCCCTTCCCAATATGTTC
GACTAGTGTTGAGATGATGAACTTGGGCGGATTTCCATCCATTCTATTTC
CCAACCTGAAACATGCATGAGAGATGTTTCAGCTTCAAGCTACACATGAT
GGATTGGATTTCTTTTTTTACCAATTTCTTTTTCAGAATATCAGTTAAAA
ATAGAGTTTTTCCAATGGGACCTTTAGAATAAAAGACGTGTAAGGATAAT
GTCAGGATGGGGATGGAGGCTGGATTCTCTTGCATTATCATAATTTTGAC
CACCTAATTGGTTTCAATTTGGTTAGAACCACACGCCGGTTTTTATTCCC
AAGTTTGTTTTAAGCCC
back to top