DY258098

Overview
NameDY258098
Unique NameDY258098
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1343
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258098 vs. ExPASy Swiss-Prot
Match: SERA_MACFA (D-3-phosphoglycerate dehydrogenase OS=Macaca fascicularis GN=PHGDH PE=2 SV=4)

HSP 1 Score: 89.7373 bits (221), Expect = 4.204e-17
Identity = 69/226 (30.53%), Postives = 113/226 (50.00%), Query Frame = 1
Query:  253 LCVVKTMRLDSNVISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAI-----EQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESG 915
            L V    ++ ++VI+ A +++++ + G G++ VD+ AATR G+ V   P    GN+ S AELT  +++ L R+  +   ++     E+KK     G  L GKT+ ILG G IG E+A R++ FG+K I      +     S     L +               E+I+    + D +     L   T G++N +  +  KKG  +VN ARGG++D  A+   L+SG
Sbjct:   51 LIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGVLVMNTP---NGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKF---MGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPIISPEVSASFGVQQLPL---------------EEIW---PLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSG 252          
BLAST of DY258098 vs. ExPASy Swiss-Prot
Match: SERA_BOVIN (D-3-phosphoglycerate dehydrogenase OS=Bos taurus GN=PHGDH PE=2 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 4.204e-17
Identity = 68/226 (30.09%), Postives = 110/226 (48.67%), Query Frame = 1
Query:  253 LCVVKTMRLDSNVISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAI-----EQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESG 915
            L V    ++ S++I+ A +++++ + G G++ VD+ AATR GI V   P    GN+ S AELT  +++ L R+  +   ++     E+KK     G  L GK + ILG G IG E+A R++ FG+K I      +     S     L ++                  +   + D +     L   T G++N S  +  KKG  +VN ARGG++D  A+   L+SG
Sbjct:   51 LIVRSATKVTSDIINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTP---NGNSLSAAELTCGMIMCLARQIPQAAASMKDGKWERKKF---MGTELNGKVLGILGLGRIGREVATRMQSFGMKTIGYDPIISPEVSASFGVQQLPLE------------------QIWPLCDFITVHTPLLPSTTGLLNDSTFAQCKKGVCVVNCARGGIVDEGALLRALQSG 252          
BLAST of DY258098 vs. ExPASy Swiss-Prot
Match: SERA_SYNY3 (D-3-phosphoglycerate dehydrogenase OS=Synechocystis sp. (strain PCC 6803) GN=serA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 5.490e-17
Identity = 65/249 (26.10%), Postives = 121/249 (48.59%), Query Frame = 1
Query:  199 QVDV---IPISDAPDVIANYHLCVVKTM-RLDSNVISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP--TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCH-EDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESGHLG 924
            QVDV   +  ++  D++  Y   ++++  ++   +I   +Q+K+I + GVG++ +D+ AATR GI V   P    GN  + AE  + +M+ L R   +   ++++ K       G  +  KT+ ++G G IG  +A   +  G+K+                   LA    I  +  D+ GC   D+    S AD +   +    +TA ++N   L+ MK  + ++N +RGG++D EA+   +E+  +G
Sbjct:   51 QVDVKTGLSEAEIIDIVPEYDAIMLRSATKVTEKIIQAGSQLKIIGRAGVGVDNIDVPAATRQGIVVVNSP---EGNTIAAAEHALAMMMALARHIPDANKSVKESKWERKQFIGTEVYKKTLGVVGLGKIGSHVAGVAKAMGMKL-------------------LAYDPFISQERADQIGCTLVDLDLLFSEADFITLHIPKTPETANLINAETLAKMKPTARIINCSRGGIIDEEALVTAIETAQIG 277          
BLAST of DY258098 vs. ExPASy Swiss-Prot
Match: SERA_ARATH (D-3-phosphoglycerate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=At1g17745 PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 7.171e-17
Identity = 65/205 (31.71%), Postives = 104/205 (50.73%), Query Frame = 1
Query:  307 QMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKL--GVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESG 915
            ++K++ + GVG++ VD+ AAT  G  V   P   T N  + AE  I L+  + R   +   +I+  K       G +L+GKT+ ++GFG +G E+A+R +  G+ +I       SH   +    A A+  G+  DLV          +  S AD V   + L   T  + N    S MKKG  L+N+ARGG++D +A+   L++G
Sbjct:  145 RLKVVGRAGVGIDNVDLQAATEHGCLVVNAP---TANTVAAAEHGIALLASMARNVAQADASIKAGKWERSKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMTVI-------SHDPYAPADRARAL--GV--DLVS-------FDQAISTADFVSLHMPLTPATKKVFNDETFSKMKKGVRLINVARGGVIDEDALVRALDAG 328          
BLAST of DY258098 vs. ExPASy Swiss-Prot
Match: GYAR_PYRHO (Glyoxylate reductase OS=Pyrococcus horikoshii GN=gyaR PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 7.171e-17
Identity = 67/236 (28.39%), Postives = 114/236 (48.31%), Query Frame = 1
Query:  253 LCVVKTMRLDSNVISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLR---KQNEMRMAIEQKKLGVP------TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESGHLGRLG 933
            L  + + R+D  V   A +++++  + VG + +DI  AT+ GI V   P  +T    + A+L   L+L   R   K +    + E KK GV        G  + GKT+ I+G G IG  +AKR + F ++I+   R+     +       L  +   ++DL+ E             +D VV  + L ++T  ++N+  L  MKK ++L+NIARG ++D  A+   L+ G +   G
Sbjct:   49 LVTMLSERIDKEVFENAPKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTD---ATADLAFALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRKEEVE-----RELNAEFKPLEDLLRE-------------SDFVVLAVPLTRETYHLINEERLKLMKKTAILINIARGKVVDTNALVKALKEGWIAGAG 263          
BLAST of DY258098 vs. ExPASy Swiss-Prot
Match: GYAR_THELI (Glyoxylate reductase OS=Thermococcus litoralis GN=gyaR PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.223e-16
Identity = 69/237 (29.11%), Postives = 113/237 (47.68%), Query Frame = 1
Query:  253 LCVVKTMRLDSNVISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAI---EQKKLGVP------TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGC-HEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESGHLGRLG 933
            L  + T ++D  ++  A ++K+I Q+ VG + +DI  AT+ GI V   PG +T    + A+L   L+L + R+  E    +   E KK  V        G  L GKT+ I+GFG IG  LAKR + FG+KII   R+    ++                   +E G  + D       +D +   + L K+T  ++ +  L  MK  ++L+N +RG ++D  A+   L+ G +   G
Sbjct:   49 LVTLVTDKVDKELLENAPKLKIIAQYAVGYDNIDIEEATKRGIYVTNTPGVLTD---ATADLAFALLLAVARRIVEADAFVRSGEWKKSEVGWHPLMFLGYGLKGKTLGIVGFGRIGQALAKRAKGFGMKIIYYSRTRKPEAE-------------------EEIGAEYVDFETLLKESDFISLHVPLTKETYHMIGEKELKLMKPNAILINTSRGAVVDTNALIKALKEGWIAGAG 263          
BLAST of DY258098 vs. ExPASy Swiss-Prot
Match: FDH2_ORYSJ (Formate dehydrogenase 2, mitochondrial OS=Oryza sativa subsp. japonica GN=Os06g0486900 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.086e-16
Identity = 68/217 (31.34%), Postives = 103/217 (47.47%), Query Frame = 1
Query:  292 ISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGE-TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGC--HEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESGHLGRLG 933
            I +A  ++L++  GVG + +D+ AA   G+ VA I G  T + A    + I L+L      +   +  E    G+      L GKTV  +G G IG  L +RL+PF   ++        H +V            I  +L  E G    ED+       DVVV  + L ++T G+ NK  ++ MKKG  +VN ARG ++D +A+A    SGH+   G
Sbjct:  108 IKKAKNLELLLTAGVGSDHIDLPAAAAAGLTVAEITGSNTVSVAEDQLMRILLLLRNFLPGHHQIVNGEWNVAGIAHRTYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLMY-------HDRVK-----------IDPELEKEIGAKYEEDLDAMLPKCDVVVINMPLTEKTRGMFNKERIAKMKKGVTIVNNARGAIMDTQAVADACASGHVAGYG 306          
BLAST of DY258098 vs. ExPASy Swiss-Prot
Match: GYAR_KORCO (Glyoxylate reductase OS=Korarchaeum cryptofilum (strain OPF8) GN=gyaR PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.208e-16
Identity = 60/254 (23.62%), Postives = 121/254 (47.64%), Query Frame = 1
Query:  190 PSIQVDVIPISDAPDVIANYHLCVVKTMRLDSNVISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP------TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESGHLGRLG 933
            PS +V +  + D   +++      + T  +D+ V   A +++++ Q+ VG + +D+  AT+ GI V   PG +T    + A+    L++   R+  E    + + K  V        G  + G+T+ I+G G IG  +A+R + FG++I+     +    +       L V+   ++ L++E             +D V   + L ++T  ++ +  L  MK+ ++LVN +RG ++D +A+   L+ G +   G
Sbjct:   34 PSKKVIIERVKDCDALVS------LLTDPIDAEVFEAAPKLRIVAQYAVGYDNIDVKEATKRGIYVTNTPGVLT---ETTADFAFALLMAAARRVVEADRYVREGKWKVAWHPMMMLGYDVYGRTLGIVGMGRIGAAVARRAKGFGMRIL-----YYDSIRREDFEKELGVEYVPLEKLLEE-------------SDFVSLHVPLTEETYHMIGEEQLRRMKRTAILVNTSRGKVVDQKALYKALKEGWIAGAG 260          

HSP 2 Score: 31.9574 bits (71), Expect = 2.208e-16
Identity = 16/41 (39.02%), Postives = 24/41 (58.54%), Query Frame = 2
Query:  926 GWGIDVAWTDPFDPHDPILKFKNVLINLKVGSVTKHSYKSR 1048
            G G+DV   +P  P DP+LK +NV++     S + H  +SR
Sbjct:  258 GAGLDVFEQEPIPPDDPLLKLENVVLAPHAASAS-HETRSR 297          
BLAST of DY258098 vs. ExPASy Swiss-Prot
Match: FDH_SOLTU (Formate dehydrogenase, mitochondrial OS=Solanum tuberosum GN=FDH1 PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 7.928e-16
Identity = 63/214 (29.44%), Postives = 104/214 (48.60%), Query Frame = 1
Query:  292 ISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPT----GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESGHL 921
            I +A  ++L++  G+G + VD+ AA   G+ VA + G    N  S AE  +  +L L+R        +   +  V         L GKTV  +G G IG  L +RL+PF   ++        H ++   S         +++ +  K   ED+ K  S  D+VV    L ++T G+ +K  ++ +KKG L+VN ARG ++D +A+     SGH+
Sbjct:  111 IKKAKNLQLLLTAGIGSDHVDLKAAAAAGLTVAEVTGS---NTVSVAEDELMRILILVRNFLPGHHQVINGEWNVAAIAHRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLY-------HDRLKMDSE--------LENQIGAK-FEEDLDKMLSKCDIVVINTPLTEKTKGMFDKERIAKLKKGVLIVNNARGAIMDTQAVVDACNSGHI 305          
BLAST of DY258098 vs. ExPASy Swiss-Prot
Match: FDH_HORVU (Formate dehydrogenase, mitochondrial OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.352e-15
Identity = 64/217 (29.49%), Postives = 102/217 (47.00%), Query Frame = 1
Query:  292 ISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP-TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGC--HEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESGHLGRLG 933
            I +A   +L++  G+G + +D+ AA   G+ VAR+ G  T + A    + I ++L       +  +  E    G+      L GKTV  +G G  G  L +RL+PF   ++        H ++            I  +L  E G    ED+       DVVV    L ++T G+ NK  ++ MKKG ++VN ARG ++D +A+A    SGH+   G
Sbjct:  107 IKKAKTPELLLTAGIGSDHIDLPAAAAAGLTVARVTGSNTVSVAEDELMRILILLRNFLPGYQQVVKGEWNVAGIAHRAYDLEGKTVGTVGAGRYGRLLLQRLKPFNCNLLY-------HDRLQ-----------INPELEKEIGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKEKIAKMKKGVIIVNNARGAIMDTQAVADACSSGHIAGYG 305          
The following BLAST results are available for this feature:
BLAST of DY258098 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
SERA_MACFA4.204e-1730.53D-3-phosphoglycerate dehydrogenase OS=Macaca fasci... [more]
SERA_BOVIN4.204e-1730.09D-3-phosphoglycerate dehydrogenase OS=Bos taurus G... [more]
SERA_SYNY35.490e-1726.10D-3-phosphoglycerate dehydrogenase OS=Synechocysti... [more]
SERA_ARATH7.171e-1731.71D-3-phosphoglycerate dehydrogenase, chloroplastic ... [more]
GYAR_PYRHO7.171e-1728.39Glyoxylate reductase OS=Pyrococcus horikoshii GN=g... [more]
GYAR_THELI1.223e-1629.11Glyoxylate reductase OS=Thermococcus litoralis GN=... [more]
FDH2_ORYSJ2.086e-1631.34Formate dehydrogenase 2, mitochondrial OS=Oryza sa... [more]
GYAR_KORCO2.208e-1623.62Glyoxylate reductase OS=Korarchaeum cryptofilum (s... [more]
FDH_SOLTU7.928e-1629.44Formate dehydrogenase, mitochondrial OS=Solanum tu... [more]
FDH_HORVU1.352e-1529.49Formate dehydrogenase, mitochondrial OS=Hordeum vu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3AA08ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258098 ID=DY258098; Name=DY258098; organism=Citrus clementina; type=EST; length=1343bp
GGGAAAAGGCCTCTGGATTTATTCAATATCTGCAGTCTCTTCAGTTCACA
AGGGTAACTGGGCGGATTTGATATAAGCAAAATGGAGGGAATGGCTAGGA
GCAGTGATAAAAACATCACCCGTGTTCTCTTTTGCGGTCCACATTTCCCT
GCTTCCCATAATTATACTAAAGAATACTTGCAAAATTACCCTTCCATTCA
GGTTGATGTGATCCCCATTAGTGATGCGCCTGATGTCATAGCAAACTACC
ATCTTTGTGTGGTAAAAACCATGCGGCTAGATTCAAATGTTATATCTCGT
GCGAATCAAATGAAGCTTATAATGCAGTTTGGGGTTGGCCTGGAAGGTGT
GGATATTAATGCTGCTACAAGATGCGGCATCAAAGTTGCTAGAATCCCAG
GTGACGTGACTGGAAATGCTGCATCGTGTGCTGAATTGACCATATATCTA
ATGCTGGGCCTTCTCAGAAAGCAGAATGAGATGAGAATGGCCATAGAGCA
AAAAAAACTTGGAGTGCCAACTGGTGAGACACTACTTGGGAAAACTGTAT
TTATCTTGGGCTTTGGAAATATTGGGGTTGAATTGGCAAAGCGCTTGCGA
CCATTTGGTGTGAAAATTATTGCCACAAAAAGGAGTTGGGCTTCTCATTC
TCAAGTTTCTTGCCAATCTAGTGCACTTGCAGTAAAAAACGGGATCATTG
ATGATTTGGTTGATGAGAAGGGTTGTCATGAAGATATTTTTAAGTTTGCT
AGCATGGCCGACGTGGTTGTTTGTTGCCTGAGTTTAAATAAGCAGACGGC
TGGCATTGTAAACAAGTCATTTCTATCTTCAATGAAAAAGGGTTCTCTTC
TGGTGAATATTGCTCGAGGAGGTCTTTTAGACTATGAGGCCATTGCTCAT
TACCTCGAATCTGGCCACTTGGGGAGGCTGGGGCATTGATGTTGCTTGGA
CAGACCCCTTTGATCCCCATGACCCCATTCTAAAGTTCAAGAATGTTTTA
ATCAACCTCAAGGTTGGAAGTGTTACCAAACATTCTTACAAATCAAGGGG
CTAAGGTTGGTTGGCCAACGTTGCCCCTCAACTTTCAGGCGGGGGACTCC
TTTGAAAAGGAACTAAAATTTGGGGAATTGAATCCACCCTTCAAAGGAAC
TCTGTTTCCATCCGGCCCAAACCTTAATAAGGCCTGGCTTTCCCTTTTTT
AACAAATCTTTTTCCCGGGGCATTTTTTGAAAAAAAAACCCCCCATTTTT
GTCTGGTTTTTTTAAAAATTTGGAAACCATATTTAACACCAACAAAAATA
TTCTCTTTAATACAACCCTCTCCTATATTGTTTTTTGTTTTTT
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