DY258151

Overview
NameDY258151
Unique NameDY258151
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1291
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY258151 vs. ExPASy Swiss-Prot
Match: VDAC2_MOUSE (Voltage-dependent anion-selective channel protein 2 OS=Mus musculus GN=Vdac2 PE=1 SV=2)

HSP 1 Score: 46.595 bits (109), Expect = 2.041e-11
Identity = 36/134 (26.87%), Postives = 57/134 (42.54%), Query Frame = 3 
Query:  516 GTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKSA-KIGLGVALK 914
            G  ++FD+A    T+ N  + Y   D      +N+ G     S Y  V    +T+V   L  +  +N     I  ++ LDP  S+ A+VNN            RP    T+S  VD ++      K+GL + L+
Sbjct:  164 GYQMTFDSAKSKLTRSNFAVGYRTGDFQLHTNVNN-GTEFGGSIYQKVCEDFDTSVN--LAWTSGTNCTRFGIAAKYQLDPTASISAKVNNSSLIGVGYTQTLRPGVKLTLSALVDGKSFNAGGHKLGLALELE 294

HSP 2 Score: 41.2022 bits (95), Expect = 2.041e-11
Identity = 40/146 (27.40%), Postives = 66/146 (45.21%), Query Frame = 2 
Query:  101 PGLYSEIGKKARDPLYKDYQSD-HKFTVTTYTSAGVAITSSGVKKGELFLADVSTQLKNK----NITTDVKVDTNSNLFTTITV-DEPAPGLKSIFSFIV---PDQRSGKVELQYQHEYAGISTGIGFT-ANPIVNFSGV----GW 496
            P  Y+++GK ARD   K +     K  V T + +GV  ++SG    +      + + K K     +T   K +T++ L T I + D+   GLK  F         ++SGK++  Y+ E   +   + F  A P ++ S V    GW
Sbjct:   16 PPPYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNTDTGKVSGTLETKYKWCEYGLTFTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTGKKSGKIKSAYKRECINLGCDVDFDFAGPAIHGSAVFGYEGW 161
The following BLAST results are available for this feature:
BLAST of DY258151 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
VDAC2_MOUSE2.041e-1126.87Voltage-dependent anion-selective channel protein ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3BB12ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258151 ID=DY258151; Name=DY258151; organism=Citrus clementina; type=EST; length=1291bp
GAGGGTTTTGATTTCATAATCTTCCTCCAGCTGAAATAATCAAAACTGAT
ATTTCTCAGCGTTTCCTTTCCATTTTCTCTGGAGAATCATGGTGAAAGGC
CCCGGGCTCTACTCTGAAATCGGCAAGAAAGCCCGAGATCCTCTCTACAA
GGACTACCAGAGCGACCACAAGTTCACTGTCACTACTTACACGTCAGCTG
GAGTCGCGATAACTTCGAGTGGTGTTAAGAAAGGTGAGCTTTTTTTGGCT
GATGTCAGCACTCAGTTGAAGAACAAGAACATCACTACTGATGTTAAAGT
TGATACTAACTCTAATCTTTTTACAACCATCACTGTCGATGAGCCTGCTC
CTGGACTCAAGTCAATCTTTAGCTTTATCGTTCCTGATCAGAGATCTGGC
AAGGTGGAACTCCAATATCAGCATGAATATGCTGGAATAAGCACTGGCAT
TGGATTCACTGCAAATCCCATTGTTAACTTTTCTGGTGTTGGTTGGAAAC
AATTCTGTTGCTCTTGGGACTGATCTCTCATTTGATACTGCCACTGGCAA
CTTCACCAAGTGCAATGCGGGGCTGAGCTATACACATACTGACCTCATTG
CTTCCCTGACATTGAATGACAAAGGTGACACCCTTAATGCTTCCTACTAC
CACATTGTAAGCCCACTGACCAATACCGCTGTTGGGGCGGAGCTGACCCA
TAGCTTTTCAAGCAACGAGAACACTCTGACAATCGGAACTCAGCATGCTC
TTGATCCTTTGACCTCGGTGAAGGCCCGTGTGAACAACTATGGCAGGGCA
AGTGCTCTTATCCAGCACGAGTGGCGTCCCAAATCTCTATTTACTATCTC
AGGAGAGGTAGACACCAGGGCCATTGAAAAGAGTGCTAAAATTGGGCTGG
GCGTAGCTCTCAAGCCATAGGCTAAGCAATTAATCTTGGCGTCGGGGGAA
GGAGAGAAAACATGTTTTTAGAGTGGTGGAGTACAATAATTTGTAGGAAA
AATGATGTGAAAACTATAATCCTTCTTTTTTTTTCCCCTTTCCAAAAACT
TGTGGATTTCCCTGGGGGGGCTTTGGGGTTTCCCCGAAGGTTGTGGGCGG
CGGGTTGGTAAAAAATAATTTCGGGGGGAAGGCCCAAAATCAAACAATTG
GCGGGTTTCTTCCTTTTTAAATTTTCCGTTCCCTTTCATTCCCCCCAAAA
AGGGGGAAATACTGGGTTTTTTCCCGGCAAAAAAATAAAAATTTTTAAAT
TTGGGGGGGAAAATTTTTTTTTTTTTTTTTGGTTTCTGGGT
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