DY258165

Overview
NameDY258165
Unique NameDY258165
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length935
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10023 contig Ccv1_Contig10023:4..938. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258165 vs. ExPASy Swiss-Prot
Match: Y3868_ARATH (Probable inactive receptor kinase At3g08680 OS=Arabidopsis thaliana GN=At3g08680 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.615e-11
Identity = 51/173 (29.48%), Postives = 77/173 (44.51%), Query Frame = 3
Query:  255 SWDPTLVNPCTWFHVTCDSNN-HVIRLDLGNSNISGTLGPEVGQ-LQHLQYLELYMNDISGKIPKELGNLKSLVSMDMYQNKLEGEIPKSFANLKSLKFLRLNNNKLTGSIPRELTTLSDLKVFDVSNNGLCGTIP-------------------VDGPFRSFPMESFENNKL 710
            +W+ T+    +W  +TC  NN  V  L L  S + G L  +  + L  L+ + L  N + G IP  + +L  + S+  ++N   G IP   ++   L  L L+ N L+G+IP  L  L+ L    + NN L G IP                   V    +SFP  SF+ N L
Sbjct:   46 NWNSTIPICASWTGITCSKNNARVTALRLPGSGLYGPLPEKTFEKLDALRIISLRSNHLQGNIPSVILSLPFIRSLYFHENNFSGTIPPVLSH--RLVNLDLSANSLSGNIPTSLQNLTQLTDLSLQNNSLSGPIPNLPPRLKYLNLSFNNLNGSVPSSVKSFPASSFQGNSL 216          
BLAST of DY258165 vs. ExPASy Swiss-Prot
Match: TMM_ARATH (Protein TOO MANY MOUTHS OS=Arabidopsis thaliana GN=TMM PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.027e-11
Identity = 40/88 (45.45%), Postives = 51/88 (57.95%), Query Frame = 3
Query:  393 LQYLELYMNDISGKIPKELGNLKSLVSMDMYQNKLEGEIPKSFANLKSLKFLRLNNNKLTGSIPRELTTLSDLKVFDVSNNGLCGTIP 656
            LQ L L  N   G IP ELGNL +L  +D+++N L G IP SF     L+ L L+ N+LTGSIP     L  L V D++ N L G +P
Sbjct:  161 LQTLVLRENGFLGPIPDELGNLTNLKVLDLHKNHLNGSIPLSFNRFSGLRSLDLSGNRLTGSIPG--FVLPALSVLDLNQNLLTGPVP 246          
BLAST of DY258165 vs. ExPASy Swiss-Prot
Match: SRF1_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 1 OS=Arabidopsis thaliana GN=SRF1 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 6.027e-11
Identity = 60/207 (28.99%), Postives = 96/207 (46.38%), Query Frame = 3
Query:  177 ALSTNSEGNALHALRSRFKDPTNVLQSWDPTLVNPC--TWFHVTCDSNNHVIRLDLGNSNISGTLGPEVGQLQHL----------------------QYLELYMNDISGKIPKELGNLKSLVSMDMYQNKLEGEIPKSFANLKSLKFLRLNNNKLTGSIPRELTTLSDLKVFDVSNNGLCGTIPV--DGPFRSFPMESFENNKLNGP 719
            AL+   +  A+++L    + P  +L  W  +  +PC  +W  V C+++  V  + L ++N+ G LG  +     L                      Q L L  N+ +G IP+ L +LKSL  M +  N L G+IP  F +L  +  + L++N L+G +P  +  LS L    + NN L G + V  D P +     + ENN  NGP
Sbjct:   31 ALTNPDDVAAINSLFLALESP--LLPGWVASGGDPCGESWQGVLCNASQ-VETIILISANLGGELGVGLNMFTSLKAMDFSNNHIGGSIPSTLPVSLQNLFLSGNNFTGTIPESLSSLKSLSVMSLNNNLLSGKIPDVFQDLGLMINIDLSSNNLSGPLPPSMQNLSTLTSLLLQNNHLSGELDVLQDLPLKDL---NVENNLFNGP 231          
BLAST of DY258165 vs. ExPASy Swiss-Prot
Match: Y1143_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g14390 OS=Arabidopsis thaliana GN=At1g14390 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.871e-11
Identity = 42/111 (37.84%), Postives = 59/111 (53.15%), Query Frame = 3
Query:  333 DLGNSNISGT-LGPEV--GQLQHLQYLELYMNDISGKIPKELGNLKSLVSMDMYQNKLEGEIPKSFANLKSLKFLRLNNNKLTGSIPRELTTLSDLKVFDVSNNGLCGTIP 656
            +L   N+ G  LGPEV      +L  + L  N    KIP+++  L  L S+D+  NK  G IP+   +L SL+ L L  N L+GS+P      S L++ DVS N L G +P
Sbjct:  180 NLQELNLGGNKLGPEVVPSLASNLITISLKNNSFGSKIPEQIKKLNKLQSLDLSSNKFTGSIPRFLLSLPSLQNLSLAQNLLSGSLPNSSLCNSKLRILDVSRNLLTGKLP 290          
The following BLAST results are available for this feature:
BLAST of DY258165 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 104
Match NameE-valueIdentityDescription
Y3868_ARATH4.615e-1129.48Probable inactive receptor kinase At3g08680 OS=Ara... [more]
TMM_ARATH6.027e-1145.45Protein TOO MANY MOUTHS OS=Arabidopsis thaliana GN... [more]
SRF1_ARATH6.027e-1128.99Protein STRUBBELIG-RECEPTOR FAMILY 1 OS=Arabidopsi... [more]
Y1143_ARATH7.871e-1137.84Probable LRR receptor-like serine/threonine-protei... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3BE03ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258165 ID=DY258165; Name=DY258165; organism=Citrus clementina; type=EST; length=935bp
GACACAAATACAACCTAAAGCATTGACTTCACTTCTCAATCTCTCTCTTT
GGCCTTGATTTTATATTCATAAACACCTTTGATATTTTTTTCCTTCTTAT
TTCCCACTTCACGTTTGCAATTTTTCTGATGGCTCCAATTTCTCTCATTC
TCTCCTTCTTCCTCTTCATTTCACCTGCCCTCTCAACAAACTCTGAAGGA
AATGCTTTGCATGCCTTGAGAAGCAGGTTTAAGGACCCCACAAATGTGTT
GCAAAGCTGGGACCCAACACTGGTTAATCCCTGCACTTGGTTCCATGTCA
CCTGTGATTCCAACAATCATGTGATTCGTTTGGACTTGGGTAACTCTAAT
ATTTCTGGAACTTTGGGGCCTGAGGTTGGCCAGCTCCAGCATCTGCAGTA
CTTGGAGCTTTACATGAATGACATAAGTGGGAAAATTCCGAAAGAGTTAG
GTAATTTGAAAAGCCTTGTCAGCATGGATATGTATCAAAATAAACTGGAA
GGAGAAATACCAAAGTCCTTTGCCAATTTGAAGTCGCTTAAATTTCTGCG
GTTGAACAACAACAAACTAACAGGATCAATTCCGAGGGAGCTGACCACCC
TGTCGGACCTCAAAGTTTTTGATGTTTCTAACAATGGTCTCTGTGGGACA
ATCCCTGTTGATGGTCCTTTTAGAAGCTTTCCTATGGAGAGTTTTGAAAA
TAATAAACTCAATGGACCAGAGCTGCAAGGACTGGTGCCTTATGATTTTG
GATGCTGAAGAAGGTTGAAAACCCTCCGTCTTCTATTGAAGACCATAATG
TTAGAGACTCGTATAGGGTAAAATTATATCGTGTGCATCAGCTTGATCGA
ATGGCTAGATATATTATGTCAGCGGCAGTGACTGTTCATGTATGAAGTAA
CTAAAGCTATTAAAATAAAATTATGTAAACTTATT
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