DY258165

Overview
NameDY258165
Unique NameDY258165
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length935
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10023 contig Ccv1_Contig10023:4..938. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258165 vs. ExPASy Swiss-Prot
Match: SRF4_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 4 OS=Arabidopsis thaliana GN=SRF4 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.447e-12
Identity = 51/204 (25.00%), Postives = 96/204 (47.06%), Query Frame = 3
Query:  177 ALSTNSEGNALHALRSRFKDPTNVLQSWDPTLVNPC--TWFHVTCDSNNHVIRLDLGNSNISGTLGPEVGQLQHLQYLELYMNDISGKIPKEL---------------GNLKSLVSM-------DMYQNKLEGEIPKSFANLKSLKFLRLNNNKLTGSIPRELTTLSDLKVFDVSNNGLCGTIPVDGPFRSFPMESFENNKLNG 716
            A + + + +AL+        P+  L+ W  +  +PC  +W  +TC  ++ V  + +    +SG+LG ++G L+ L YL++  N+++G +P +L               GN+   VS+       ++ +N L GE+   F  L  L+ + L++N+LTG +P+    L+ LK   +  N   G+I            +  NN+  G
Sbjct:   25 AKTDSQDVSALNDAYKSMNSPSK-LKGWSSSGGDPCGDSWDGITCKGSS-VTEIKVSGRGLSGSLGYQLGNLKSLTYLDVSKNNLNGNLPYQLPDKLTYLDGSENDFNGNVPYSVSLMNDLSYLNLGRNNLNGELSDMFQKLPKLETIDLSSNQLTGKLPQSFANLTGLKTLHLQENQFKGSINALRDLPQIDDVNVANNQFTG 226          
BLAST of DY258165 vs. ExPASy Swiss-Prot
Match: PGIP2_ARATH (Polygalacturonase inhibitor 2 OS=Arabidopsis thaliana GN=PGIP2 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 3.196e-12
Identity = 54/170 (31.76%), Postives = 80/170 (47.06%), Query Frame = 3
Query:  249 LQSWDPTLVNPCTWFHVTCDSNNHVIRLDLGNSNISGTLGPEVGQLQHLQYLELYMNDISGKIPKELGNLKSLVSMDMYQ-NKLEGEIPKSFANLKSLKFLRLNNNKLTGSIPRELTTLSDLKVFDVSNNGLCGTIPVD-GPFRSFPMESFENNKLNGPELQGLVPYDFG 752
            L SWDP   + C+W+ + C           G++ ++            +  L +   +ISG+IP E+G+L  L S+   +   L G I  + A LK+L FLRL+   LTG +P  L+ L +L+  D+S N L G+IP      R         NKL GP     +P  FG
Sbjct:   46 LASWDPK-TDCCSWYCLEC-----------GDATVN----------HRVTSLIIQDGEISGQIPPEVGDLPYLTSLIFRKLTNLTGHIQPTIAKLKNLTFLRLSWTNLTGPVPEFLSQLKNLEYIDLSFNDLSGSIPSSLSSLRKLEYLELSRNKLTGP-----IPESFG 188          
BLAST of DY258165 vs. ExPASy Swiss-Prot
Match: Y2242_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At2g24230 OS=Arabidopsis thaliana GN=At2g24230 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.174e-12
Identity = 56/173 (32.37%), Postives = 81/173 (46.82%), Query Frame = 3
Query:  282 CTWFHVTCDSNN-HVIRLDLGNSNISGTLGPE-VGQLQHLQYLELY-----------------------MNDISGKIPKELGNLKSLVSMDMYQNKLEGEIPKSFANLKSLKFLRLNNNKLTGSIPRELTTLSDLKVFDVSNNGLCGTIPVDGPFRSFP---MESFENNKLNG 716
            C+W  + CDS N HVI L     ++SG +    +G+L  LQ L+L                         N ISG     +GN   L  +D+  N   G IP++  +L SL+ L+L++N    SIPR L     L   D+S+N L G++P DG   +FP     S   NK++G
Sbjct:   55 CSWQGLFCDSKNEHVIMLIASGMSLSGQIPDNTIGKLSKLQSLDLSNNKISALPSDFWSLNTLKNLNLSFNKISGSFSSNVGNFGQLELLDISYNNFSGAIPEAVDSLVSLRVLKLDHNGFQMSIPRGLLGCQSLVSIDLSSNQLEGSLP-DGFGSAFPKLETLSLAGNKIHG 226          
BLAST of DY258165 vs. ExPASy Swiss-Prot
Match: PII2_ARATH (Piriformospora indica-insensitive protein 2 OS=Arabidopsis thaliana GN=PII-2 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.451e-12
Identity = 47/138 (34.06%), Postives = 70/138 (50.72%), Query Frame = 3
Query:  321 VIRLDLGNSNISGTLGPEVGQLQHLQYLELYMNDISGKIPKELGNLKS--------------------------LVSMDMYQNKLEGEIPKSFANLKSLKFLRLNNNKLTGSIP-RELTTLSDLKVFDVSNNGLCGTI 653
            +++LDL N+ + G L  E+G L++L  L+L  N  SG + K + N++S                          LV +D+ +  L GEIP S  NLK L+FL LNNN LTG +P ++L  L  L    ++ N L G +
Sbjct:  241 LLKLDLSNNLLEGNLPQELGFLKNLTLLDLRNNRFSGGLSKNIENIQSLTELVLSNNPMGEEDMVGTNWGKMSNLVVLDLSKMGLRGEIPTSLTNLKRLRFLGLNNNNLTGFVPSKKLEALPCLGALYINGNNLTGEL 378          

HSP 2 Score: 70.8626 bits (172), Expect = 1.214e-11
Identity = 45/135 (33.33%), Postives = 64/135 (47.41%), Query Frame = 3
Query:  330 LDLGNSNISGTLGPEVGQLQHLQYLELYMNDISGKIPKELGNLKSLVSMDMYQNKLEGEIPKSFANLKSLKFLRLNNNK--------------------------LTGSIPRELTTLSDLKVFDVSNNGLCGTIP 656
            LDL  ++ SGTL    G L  L  L+L  N + G +P+ELG LK+L  +D+  N+  G + K+  N++SL  L L+NN                           L G IP  LT L  L+   ++NN L G +P
Sbjct:  220 LDLSRNSFSGTLPTSFGDLVSLLKLDLSNNLLEGNLPQELGFLKNLTLLDLRNNRFSGGLSKNIENIQSLTELVLSNNPMGEEDMVGTNWGKMSNLVVLDLSKMGLRGEIPTSLTNLKRLRFLGLNNNNLTGFVP 354          

HSP 3 Score: 68.5514 bits (166), Expect = 6.027e-11
Identity = 62/199 (31.16%), Postives = 87/199 (43.72%), Query Frame = 3
Query:  255 SWDPTLV--NPCTWFH---VTCDSNN---HVIRLDLG----NS---NISGTLGPEVGQLQHLQYL---------------ELYMNDIS--------------GKIPKELGNLKSLVSMDMYQNKLEGEIPKSFANLKSLKFLRLNNNKLTGSIPRELTTLSDLKVFDVSNNGLCGTIPVD-GPFRSFPMESFENNKLNG 716
            SW+ + +  +PC W     V+CD  N   +V  L LG    NS   + S  + PE+ +L+HL+ L               EL+ N  S              G++P+ +GNL  L S+ + +N   GE+P S  NLK LK L    N   G IP     L +L + D+S N   GT+P   G   S       NN L G
Sbjct:   55 SWNGSALYPDPCGWTPIQGVSCDIYNDLWYVTDLSLGLIYENSLPCSSSLQIRPELFELKHLRSLSFFNCFISPMVIAKEELWTNFASNLESLEFRSNPGLIGELPETIGNLTKLKSLVVLENGFSGELPASICNLKRLKRLVFAGNSFAGMIPNCFKGLKELLILDLSRNSFSGTLPTSFGDLVSLLKLDLSNNLLEG 253          
BLAST of DY258165 vs. ExPASy Swiss-Prot
Match: Y5659_ARATH (Probable inactive receptor kinase At5g16590 OS=Arabidopsis thaliana GN=At5g16590 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.214e-11
Identity = 54/172 (31.40%), Postives = 79/172 (45.93%), Query Frame = 3
Query:  279 PCTWFHVTCDSNNHV------------IRLDLGN-----------SNISGTLGPEVGQLQHLQYLELYMNDISGKIPKELGNLKSLVSMDMYQNKLEGEIPKSFANLKSLKFLRLNNNKLTGSIPRELTTLSDLKVFDVSNNGLCGTIPVDGPFRSFPMESFENNKLNGPEL 725
            PCTW  V C+S                + + +GN           + ++G L P+   L  L+YL L  N  SG+IP  L  L +++ +++ QN   G IP +  +   L  L L +N+LTG IP        L+ F+VS+N L G+IP   P    P  +F  N L G  L
Sbjct:   52 PCTWGGVQCESGRVTALRLPGVGLSGPLPIAIGNLTKLETLSFRFNALNGPLPPDFANLTLLRYLYLQGNAFSGEIPSFLFTLPNIIRINLAQNNFLGRIPDNVNSATRLATLYLQDNQLTGPIPE---IKIKLQQFNVSSNQLNGSIP--DPLSGMPKTAFLGNLLCGKPL 218          
BLAST of DY258165 vs. ExPASy Swiss-Prot
Match: Y5487_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g48740 OS=Arabidopsis thaliana GN=At5g48740 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.214e-11
Identity = 43/133 (32.33%), Postives = 69/133 (51.88%), Query Frame = 3
Query:  258 WDPTLVNPCTWFHVTCDSNNHVIRLDLGNSNISGTLGPEVGQLQHLQYLELYMNDISGKIPKELGNLKSLVSMDMYQNKLEGEIPKSFANLKSLKFLRLNNNKLTGSIPRELTTLSDLKVFDVSNNGLCGTIP 656
            W      P  W H+ C+ N  V  L L   N+  ++ P  G L  L+ L+L+   ++G I + +G+LK L  +++  N+LE        +L +L+ L L NN L GS+P  L  L  L++ ++ NN L G +P
Sbjct:  366 WQDDPCTPLPWNHIECEGNR-VTSLFLSKINLR-SISPTFGDLLDLKTLDLHNTSLTGAI-QNVGSLKDLQKLNLSFNQLES-FGSELEDLVNLEVLDLQNNSLQGSVPETLGKLKKLRLLNLENNNLVGPLP 494          
BLAST of DY258165 vs. ExPASy Swiss-Prot
Match: Y2278_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At2g02780 OS=Arabidopsis thaliana GN=At2g02780 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.071e-11
Identity = 44/118 (37.29%), Postives = 64/118 (54.24%), Query Frame = 3
Query:  330 LDLGNSNISGTLGPEVGQL-QHLQYLELYMNDISGKIPKELGNLKSLVSMDMYQNKLEGEIPKSFANLKSLKFLRLNNNKLTGSIPRELTTLSDLKVFDVSNNGLCGTIPVDGPFRSF 680
            LDLG +     LGPEV  L   L  + L  N    KIP+++  L +L S+D+  N+  G IP+   ++ SL+ L L+ N L+GS+P    T S +   DVS+N L G +P     +SF
Sbjct:  184 LDLGGNK----LGPEVPSLPSKLTTVSLKNNSFRSKIPEQIKKLNNLQSLDLSSNEFTGSIPEFLFSIPSLQILSLDQNLLSGSLPNSSCTSSKIITLDVSHNLLTGKLPSCYSSKSF 297          
BLAST of DY258165 vs. ExPASy Swiss-Prot
Match: Y5169_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g16900 OS=Arabidopsis thaliana GN=At5g16900 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.705e-11
Identity = 36/85 (42.35%), Postives = 52/85 (61.18%), Query Frame = 3
Query:  402 LELYMNDISGKIPKELGNLKSLVSMDMYQNKLEGEIPKSFANLKSLKFLRLNNNKLTGSIPRELTTLSDLKVFDVSNNGLCGTIP 656
            L+L  + ++GKI  ++ NL  L  +D+  NKL G +P+  AN+KSL F+ L+NN L GSIP+ L    +LK+    N  LC T P
Sbjct:  419 LDLSSHKLTGKIVPDIQNLTQLQKLDLSNNKLTGGVPEFLANMKSLLFINLSNNNLVGSIPQALLDRKNLKLEFEGNPKLCATGP 503          
BLAST of DY258165 vs. ExPASy Swiss-Prot
Match: Y5516_ARATH (Probable receptor kinase At5g05160 OS=Arabidopsis thaliana GN=At5g05160 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.533e-11
Identity = 50/168 (29.76%), Postives = 82/168 (48.81%), Query Frame = 3
Query:  255 SWDPTLVNPCTWFHVTCDSNN---HVIRLDLGNSNISGTLGPE-VGQLQHLQYLELYMNDISGKIPKELGNLKSLVSMDMYQNKLEGEIP-KSFANL-KSLKFLRLNNNKLTGSIPRELTTLSDLKVFDVSNNGLCGTIPVDGPFRSFPMESFENNKLNGPELQGLVP 740
            +W+  L    +W  +TCD +N    V+ + L    + G++ P  +G+L  L+ L L  N + G +P ++ +L SL  + +  N   GE+   S  ++ K L  L L+ N L+G+IP  L  LS + V  + NN        DGP  S  + S +   L+   L G +P
Sbjct:   50 NWNKNLSLCSSWIGITCDESNPTSRVVAVRLPGVGLYGSIPPATLGKLDALKVLSLRSNSLFGTLPSDILSLPSLEYLYLQHNNFSGELTTNSLPSISKQLVVLDLSYNSLSGNIPSGLRNLSQITVLYLQNNSF------DGPIDSLDLPSVKVVNLSYNNLSGPIP 211          
BLAST of DY258165 vs. ExPASy Swiss-Prot
Match: Y5815_ARATH (Probably inactive leucine-rich repeat receptor-like protein kinase At5g58150 OS=Arabidopsis thaliana GN=At5g58150 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.615e-11
Identity = 48/165 (29.09%), Postives = 81/165 (49.09%), Query Frame = 3
Query:  267 TLVNPCTWFHVT-CDSNNHVIRLDLGNSNISGTLGPE-VGQLQHLQYLELY-----------------------MNDISGKIPKELGNLKSLVSMDMYQNKLEGEIPKSFANLKSLKFLRLNNNKLTGSIPRELTTLSDLKVFDVSNNGLCGTIPVDGPFRSFPM 686
            T  + C+W  V  CDS+ +V+ +     ++SG++    +G++  LQ L+L                         N IS  +P  +GN  SL ++D+  N + G+IP + +NL +L  L+L+NN     +P EL     L   D+S+N L  ++PV G   +FP+
Sbjct:   48 TFSSLCSWPGVVVCDSSENVLHISASGLDLSGSIPDNTIGKMSKLQTLDLSGNKITSLPSDLWSLSLLESLNLSSNRISEPLPSNIGNFMSLHTLDLSFNSISGKIPAAISNLVNLTTLKLHNNDFQFGVPPELVHCRSLLSIDLSSNRLNESLPV-GFGSAFPL 211          
The following BLAST results are available for this feature:
BLAST of DY258165 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 104
Match NameE-valueIdentityDescription
SRF4_ARATH2.447e-1225.00Protein STRUBBELIG-RECEPTOR FAMILY 4 OS=Arabidopsi... [more]
PGIP2_ARATH3.196e-1231.76Polygalacturonase inhibitor 2 OS=Arabidopsis thali... [more]
Y2242_ARATH4.174e-1232.37Probable LRR receptor-like serine/threonine-protei... [more]
PII2_ARATH5.451e-1234.06Piriformospora indica-insensitive protein 2 OS=Ara... [more]
Y5659_ARATH1.214e-1131.40Probable inactive receptor kinase At5g16590 OS=Ara... [more]
Y5487_ARATH1.214e-1132.33Probable LRR receptor-like serine/threonine-protei... [more]
Y2278_ARATH2.071e-1137.29Probable LRR receptor-like serine/threonine-protei... [more]
Y5169_ARATH2.705e-1142.35Probable LRR receptor-like serine/threonine-protei... [more]
Y5516_ARATH3.533e-1129.76Probable receptor kinase At5g05160 OS=Arabidopsis ... [more]
Y5815_ARATH4.615e-1129.09Probably inactive leucine-rich repeat receptor-lik... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3BE03ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258165 ID=DY258165; Name=DY258165; organism=Citrus clementina; type=EST; length=935bp
GACACAAATACAACCTAAAGCATTGACTTCACTTCTCAATCTCTCTCTTT
GGCCTTGATTTTATATTCATAAACACCTTTGATATTTTTTTCCTTCTTAT
TTCCCACTTCACGTTTGCAATTTTTCTGATGGCTCCAATTTCTCTCATTC
TCTCCTTCTTCCTCTTCATTTCACCTGCCCTCTCAACAAACTCTGAAGGA
AATGCTTTGCATGCCTTGAGAAGCAGGTTTAAGGACCCCACAAATGTGTT
GCAAAGCTGGGACCCAACACTGGTTAATCCCTGCACTTGGTTCCATGTCA
CCTGTGATTCCAACAATCATGTGATTCGTTTGGACTTGGGTAACTCTAAT
ATTTCTGGAACTTTGGGGCCTGAGGTTGGCCAGCTCCAGCATCTGCAGTA
CTTGGAGCTTTACATGAATGACATAAGTGGGAAAATTCCGAAAGAGTTAG
GTAATTTGAAAAGCCTTGTCAGCATGGATATGTATCAAAATAAACTGGAA
GGAGAAATACCAAAGTCCTTTGCCAATTTGAAGTCGCTTAAATTTCTGCG
GTTGAACAACAACAAACTAACAGGATCAATTCCGAGGGAGCTGACCACCC
TGTCGGACCTCAAAGTTTTTGATGTTTCTAACAATGGTCTCTGTGGGACA
ATCCCTGTTGATGGTCCTTTTAGAAGCTTTCCTATGGAGAGTTTTGAAAA
TAATAAACTCAATGGACCAGAGCTGCAAGGACTGGTGCCTTATGATTTTG
GATGCTGAAGAAGGTTGAAAACCCTCCGTCTTCTATTGAAGACCATAATG
TTAGAGACTCGTATAGGGTAAAATTATATCGTGTGCATCAGCTTGATCGA
ATGGCTAGATATATTATGTCAGCGGCAGTGACTGTTCATGTATGAAGTAA
CTAAAGCTATTAAAATAAAATTATGTAAACTTATT
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