DY258166

Overview
NameDY258166
Unique NameDY258166
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length996
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258166_ssr69 microsatellite DY258166_ssr69:69..80. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9548 contig Ccv1_Contig9548:4..999. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258166 vs. ExPASy Swiss-Prot
Match: KAD_LEPBP (Adenylate kinase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=adk PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.602e-23
Identity = 59/176 (33.52%), Postives = 101/176 (57.39%), Query Frame = 2
Query:  221 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQ-KAMEESGNDKFLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAV 730
            +G PG+GKGTQ   I E +    +S GD+LRA +K+G+  G   +  +  G +VP  V I +++ + +E    + F++DGFPR  E   A   + K   +E + V+  D  +EE+ +R+L R   +GR DDN ETI+ R   +   +LP++ +Y+A G +R+I+    + E+ + +
Sbjct:    7 MGPPGAGKGTQADIIKEKYNIPQISTGDILRAAVKNGTAMGIEAKKYMDAGDLVPDAVVIGIIRDRLVEADCANGFILDGFPRTVEQAKALSEILKELHMELDSVVNLDVPDEELVKRLLGRAIKEGRSDDNEETIKNRLHTYNTKTLPLIDFYKATGILRQINGLGSMEEITNTI 182          
BLAST of DY258166 vs. ExPASy Swiss-Prot
Match: KAD_LEPBA (Adenylate kinase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=adk PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.602e-23
Identity = 59/176 (33.52%), Postives = 101/176 (57.39%), Query Frame = 2
Query:  221 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQ-KAMEESGNDKFLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAV 730
            +G PG+GKGTQ   I E +    +S GD+LRA +K+G+  G   +  +  G +VP  V I +++ + +E    + F++DGFPR  E   A   + K   +E + V+  D  +EE+ +R+L R   +GR DDN ETI+ R   +   +LP++ +Y+A G +R+I+    + E+ + +
Sbjct:    7 MGPPGAGKGTQADIIKEKYNIPQISTGDILRAAVKNGTAMGIEAKKYMDAGDLVPDAVVIGIIRDRLVEADCANGFILDGFPRTVEQAKALSEILKELHMELDSVVNLDVPDEELVKRLLGRAIKEGRSDDNEETIKNRLHTYNTKTLPLIDFYKATGILRQINGLGSMEEITNTI 182          
BLAST of DY258166 vs. ExPASy Swiss-Prot
Match: KAD_THEAB (Adenylate kinase OS=Thermosipho africanus (strain TCF52B) GN=adk PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 3.399e-23
Identity = 61/203 (30.05%), Postives = 106/203 (52.22%), Query Frame = 2
Query:  221 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQ-KAMEESGNDKFLIDGFPRNEENRAAFEAVTKI---EPEFVLFFDCSEEEMERRILNR----NQG-------------------------REDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAV 730
            LG PG+GKGT    ++E     H+S GD+ R  + S SE G  ++ ++K G +VP ++T  +++ +  +E   + F++DGFPR      A + + +    + ++V++F+  EEE+ +RI NR    N G                         REDD  E +RKR++V++E++ PV++YY+   K+  ++ A  V  V   V
Sbjct:    6 LGPPGAGKGTYAKRLIEMLNIPHISTGDMFREAVASKSELGKKVEEILKRGDLVPDDLTNSIVKDRLSKEDCKNGFILDGFPRTVAQAKALDEIMRSLGKDLDYVIYFEVDEEEVVKRISNRRICSNCGKIYNLITLPPKVDGKCDVCGGTLYQREDDKEEVVRKRYRVYMENTYPVIEYYQKSNKLFTVNGALDVDSVIKEV 208          
BLAST of DY258166 vs. ExPASy Swiss-Prot
Match: KAD_SYNPW (Adenylate kinase OS=Synechococcus sp. (strain WH7803) GN=adk PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 3.399e-23
Identity = 57/175 (32.57%), Postives = 98/175 (56.00%), Query Frame = 2
Query:  221 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKA 736
            +G PG+GKGTQ + + E  G  HLS GDLLR+E+ +GS  G   + ++  G++V  ++ + +++  +       +L+DGFPRN     A E +    +   E V+  +  +E +  R+L R  GR DDN   IR R +V+ + + P++ YY+A+G +  +DA   V  +   ++A
Sbjct:    8 IGPPGAGKGTQASRLCETHGLRHLSTGDLLRSEVSAGSALGQEAEAVMNRGELVSDDLVLAIVRSQLTALNGQGWLLDGFPRNVAQAEALEPLLGELQQSIETVVLLELDDEVLVERLLAR--GRADDNESVIRNRLEVYRQQTAPLIDYYQARGLLISVDAQGSVEAITTRLEA 180          
BLAST of DY258166 vs. ExPASy Swiss-Prot
Match: KAD_CAMC1 (Adenylate kinase OS=Campylobacter concisus (strain 13826) GN=adk PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 3.399e-23
Identity = 60/176 (34.09%), Postives = 94/176 (53.41%), Query Frame = 2
Query:  221 LGGPGSGKGTQCANIVEHFG-YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEF----VLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVK 733
            +G PGSGK T  + I +H   + H S GDLLRAE+ SGSE G +I   I +G +VP +V +  +  A++ S     +IDG+PR+ E     + V   + E     V+  D SE+    R+L R +G  DDN E    R KV+L+   P+ ++Y  K  +  ++  + + E+   +K
Sbjct:    8 IGAPGSGKTTDASLIAQHDEKFAHFSTGDLLRAEVASGSELGKLIDGFISKGNLVPLDVVVNAIVSAIKSSNKSNIIIDGYPRSVEQMTELDKVLSEQDEISLKGVIEVDVSEDVARARVLGRARG-ADDNNEVFNNRMKVYLDPIKPIRKFYSEKELLHVVNGERGIDEIVADIK 182          
BLAST of DY258166 vs. ExPASy Swiss-Prot
Match: KAD1_SYNY3 (Adenylate kinase 1 OS=Synechocystis sp. (strain PCC 6803) GN=adk1 PE=3 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 3.399e-23
Identity = 62/181 (34.25%), Postives = 102/181 (56.35%), Query Frame = 2
Query:  221 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAM-EESGNDKFLIDGFPRNEENRAAF--EAVTKI--EPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP 748
            LG PGSGKGTQ   + E  G  H+S GD+LR  I  G+E G   +  + +G++VP ++ + L+++ +  +     +++DGFPRN  N+A F  E +  I     +V+     +E +  R+L R  GR DDN  TIR R  V+ E + P++ YY+ +GK+  +D  +PV  +   ++ +  P
Sbjct:    8 LGAPGSGKGTQAVGLAETLGIPHISTGDMLRQAIADGTELGNQAKGYMDKGELVPDQLILGLIEERLGHKDAKAGWILDGFPRN-VNQAIFLDELLVNIGHRTHWVINLKVPDEVIVERLLAR--GRADDNETTIRNRLLVYTEQTAPLMAYYQEQGKLYSLDGNQPVEAIATNLEKLVKP 185          
BLAST of DY258166 vs. ExPASy Swiss-Prot
Match: KAD_THEM4 (Adenylate kinase OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=adk PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 5.797e-23
Identity = 62/203 (30.54%), Postives = 107/203 (52.71%), Query Frame = 2
Query:  221 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK-FLIDGFPRNEENRAAFEAVTKI---EPEFVLFFDCSEEEMERRILNR----NQG-------------------------REDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAV 730
            LG PG+GKGT    + E  G  H+S GD+ R EI + SE G  +++++K G++VP ++T  ++++ + +    K F++DG+PR      A + + K    E +F ++F+ SE+ + +RI NR    N G                         REDD  E +R+R+KV+++++ PV++YY    K+  +D +  V  V   V
Sbjct:    6 LGPPGAGKGTYAKELKEILGIPHISTGDMFREEISAKSELGRKVEDILKRGELVPDDLTNVIVKERLSKPDCKKGFILDGYPRTVAQAKALDEILKKLGRELKFAIYFEVSEDVVVKRISNRRICKNCGKIYNLITLPPKINGKCDVCGGELYQREDDREEVVRRRYKVYMDNTYPVIEYYRKSNKLFTVDGSMDVDSVIKEV 208          
BLAST of DY258166 vs. ExPASy Swiss-Prot
Match: KAD_CORA7 (Adenylate kinase OS=Corynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CN-1) GN=adk PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 7.571e-23
Identity = 63/169 (37.28%), Postives = 99/169 (58.58%), Query Frame = 2
Query:  221 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAM-EESGNDKFLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYY-------EAKGKVRKID 694
            LG PG+GKGTQ A + E  G  H+S GDL RA I  G+  G   ++ I  GK+VP++VT ++++  + ++   D FL+DGFPR  +     E +     ++ + VL F+ SE+ +  R+L R  GR DD  ETIR R  V+ E + P++++Y       +A+G V +I+
Sbjct:    6 LGPPGAGKGTQAALLSEKLGVPHISTGDLFRANIGEGTPLGLEAKSYIDAGKLVPTDVTARMVEDRLNQDDAKDGFLLDGFPRTVQQADILEKLLSDKDLKLDGVLNFEVSEDVVVERMLAR--GRADDTEETIRTRLGVYREETFPLIEHYGDAIISIKAEGTVEEIN 172          
BLAST of DY258166 vs. ExPASy Swiss-Prot
Match: KAD_RHIEC (Adenylate kinase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=adk PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 9.888e-23
Identity = 66/209 (31.58%), Postives = 107/209 (51.20%), Query Frame = 2
Query:  221 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDKFLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEEEMERRILNRN------------------------------QGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFT 745
            LG PG+GKGTQ   IVE  G   LS GD+LRA + +G+E G   + ++  GK+V  E+ I ++ + +++    + F++DGFPR      A EA+ K   ++   V+ F   +EE+ RR+  R                               + R DDN ET+ KR +V+ + + P++ YY AKGK+R +D    + +V   V+A+ +
Sbjct:    6 LGPPGAGKGTQAQRIVEKHGIPQLSTGDMLRAAVNAGTEVGKRAKAVMDAGKLVSDEIVIAIVSERIDQPDCANGFILDGFPRTLVQADATEAMLKAKGLDLSVVIEFRVDDEELVRRVDGRYTCAQCGTVYHDTDKVPVEEGVCDKCGSTHFKRRPDDNAETMIKRLEVYYKETSPLIGYYHAKGKLRPVDGMAEIDQVTAEVEAILS 214          
BLAST of DY258166 vs. ExPASy Swiss-Prot
Match: KAD_BRAHW (Adenylate kinase OS=Brachyspira hyodysenteriae (strain ATCC 49526 / WA1) GN=adk PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 9.888e-23
Identity = 62/175 (35.43%), Postives = 99/175 (56.57%), Query Frame = 2
Query:  221 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQ-KAMEESGNDKFLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVK 733
            +G PG GKGTQ A I + +  +H++ GD+LR  I +G+E G   ++ + +G++VP  + I +L+ +  ++   + F++DGFPR  E       + +    +   V+    SEE +  R+L R  GR DDN ETI+ R KVF   S PV+ YY  K K+ KI++     EV+  +K
Sbjct:    7 IGAPGVGKGTQSALIEKDYSISHIATGDMLRENIANGTELGKTAKSYMDKGELVPDSLVIDMLKDRIKKDDCKNGFMLDGFPRTIEQAKELSNILESLNYKISAVIDIFASEEIIIDRLLKR--GRADDNEETIKNRLKVFENQSKPVLDYYSDKAKIIKIESIGTPEEVYAKIK 179          
The following BLAST results are available for this feature:
BLAST of DY258166 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
KAD_LEPBP2.602e-2333.52Adenylate kinase OS=Leptospira biflexa serovar Pat... [more]
KAD_LEPBA2.602e-2333.52Adenylate kinase OS=Leptospira biflexa serovar Pat... [more]
KAD_THEAB3.399e-2330.05Adenylate kinase OS=Thermosipho africanus (strain ... [more]
KAD_SYNPW3.399e-2332.57Adenylate kinase OS=Synechococcus sp. (strain WH78... [more]
KAD_CAMC13.399e-2334.09Adenylate kinase OS=Campylobacter concisus (strain... [more]
KAD1_SYNY33.399e-2334.25Adenylate kinase 1 OS=Synechocystis sp. (strain PC... [more]
KAD_THEM45.797e-2330.54Adenylate kinase OS=Thermosipho melanesiensis (str... [more]
KAD_CORA77.571e-2337.28Adenylate kinase OS=Corynebacterium aurimucosum (s... [more]
KAD_RHIEC9.888e-2331.58Adenylate kinase OS=Rhizobium etli (strain CFN 42 ... [more]
KAD_BRAHW9.888e-2335.43Adenylate kinase OS=Brachyspira hyodysenteriae (st... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3BE04ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258166 ID=DY258166; Name=DY258166; organism=Citrus clementina; type=EST; length=996bp
GACAACAACAAAAAAACTTACATTGGCAATTGGCATCCCTCTGCCTTCTT
TCTTTCCCTCTTTATTCTTCTCTCTCTCTCCAAACAAAACAACGCTCGCA
ATTCGCTAAGATCGGTTATTCAGACTGAGTTAGTTGGCGCTGATGGGAAC
TGTGGTTGAAACTCCTGTCAAGGAAGCAGATGCTACCGTAACTGTGAAGA
AGCCCACTGTTGTTTTTGTTTTGGGTGGACCAGGCAGTGGAAAAGGAACC
CAGTGCGCAAACATTGTTGAACACTTTGGATACACCCATCTCAGTGCTGG
TGATCTTCTCAGAGCCGAAATCAAATCTGGCTCTGAAAATGGAACCATGA
TTCAAAACATGATTAAAGAGGGAAAAATCGTTCCTTCAGAGGTCACAATT
AAGCTTCTCCAAAAAGCAATGGAGGAAAGTGGAAATGATAAATTTCTCAT
CGATGGTTTTCCCAGAAACGAGGAAAATCGTGCTGCATTTGAAGCTGTTA
CCAAAATTGAGCCAGAATTCGTTCTGTTTTTTGACTGTTCTGAGGAGGAG
ATGGAGAGGCGCATTTTGAATAGGAATCAGGGAAGAGAAGATGATAACGT
TGAGACAATTAGGAAGCGGTTTAAGGTTTTCTTAGAATCTAGTCTCCCTG
TGGTTCAATATTATGAAGCTAAGGGTAAAGTTCGGAAGATTGATGCTGCA
AAGCCTGTTGCAGAGGTTTTTGATGCTGTTAAAGCTGTTTTTACCCCAAA
AGATGAGAAGGCTGCTGCTTANGTCTTCTCTGTCCAGAGTATCAGATTTA
ATATCAAGGTGGTGGTATTGTTGTTGGCTGCTGCCTATTATTGTACTTTA
TTATTATGAGGTTATTATGTCACATGTTTTACTAAAATGTCATAAAAGTT
CATAATGTATCATGATATTTATTCCTGTTTGCCTAAGTATTCTTGTTATT
GAAACTGAAAACCAAGATCAAAATTTATAAAACAGCCTTGATGCTT
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