DY258166

Overview
NameDY258166
Unique NameDY258166
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length996
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258166_ssr69 microsatellite DY258166_ssr69:69..80. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9548 contig Ccv1_Contig9548:4..999. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258166 vs. ExPASy Swiss-Prot
Match: KAD_ECO27 (Adenylate kinase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=adk PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.203e-22
Identity = 69/208 (33.17%), Postives = 105/208 (50.48%), Query Frame = 2
Query:  221 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLL-QKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN-----------------------------QGREDDNVETIRKRFKVFLESSLPVVQYYEAKG-----KVRKIDAAKPVAEVFDAVKAV 739
            LG PG+GKGTQ   I+E +G   +S GD+LRA +KSGSE G   ++++  GK+V  E+ I L+ ++  +E   + FL+DGFPR      A +    I  ++VL FD  +E +  RI+ R                                R+DD  ET+RKR   + + + P++ YY  +      K  K+D  KPVAEV  A++ +
Sbjct:    6 LGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKE-AGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRAALEKI 212          
BLAST of DY258166 vs. ExPASy Swiss-Prot
Match: KAD_STRA5 (Adenylate kinase OS=Streptococcus agalactiae serotype V GN=adk PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.877e-22
Identity = 68/213 (31.92%), Postives = 105/213 (49.30%), Query Frame = 2
Query:  221 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES--GNDKFLIDGFPRNEENRAAFEAV-------------TKIEPEFVLFFDCSEEEMERRILNRNQG--------------------REDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVF-DAVKAVFTPK 751
            +G PG+GKGTQ A IVE FG  H+S GD+ RA + + +E G + ++ I +G++VP EVT  ++++ + E       FL+DG+PR  E   A +A               K++P       C  E +  RI+NR  G                    REDD  ET+++R  V +    P++++Y   G V  I+  + + EVF D  KA+   K
Sbjct:    6 MGLPGAGKGTQAAKIVEEFGVAHISTGDMFRAAMANQTEMGRLAKSYIDKGELVPDEVTNGIVKERLAEDDIAEKGFLLDGYPRTIEQAHALDATLEELGLRLDGVINIKVDP------SCLIERLSGRIINRKTGETFHKVFNPPVDYKEEDYYQREDDKPETVKRRLDVNIAQGEPILEHYRKLGLVTDIEGNQEITEVFADVEKALLELK 212          
BLAST of DY258166 vs. ExPASy Swiss-Prot
Match: KAD_STRA3 (Adenylate kinase OS=Streptococcus agalactiae serotype III GN=adk PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.877e-22
Identity = 68/213 (31.92%), Postives = 105/213 (49.30%), Query Frame = 2
Query:  221 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES--GNDKFLIDGFPRNEENRAAFEAV-------------TKIEPEFVLFFDCSEEEMERRILNRNQG--------------------REDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVF-DAVKAVFTPK 751
            +G PG+GKGTQ A IVE FG  H+S GD+ RA + + +E G + ++ I +G++VP EVT  ++++ + E       FL+DG+PR  E   A +A               K++P       C  E +  RI+NR  G                    REDD  ET+++R  V +    P++++Y   G V  I+  + + EVF D  KA+   K
Sbjct:    6 MGLPGAGKGTQAAKIVEEFGVAHISTGDMFRAAMANQTEMGRLAKSYIDKGELVPDEVTNGIVKERLAEDDIAEKGFLLDGYPRTIEQAHALDATLEELGLRLDGVINIKVDP------SCLIERLSGRIINRKTGETFHKVFNPPVDYKEEDYYQREDDKPETVKRRLDVNIAQGEPILEHYRKLGLVTDIEGNQEITEVFADVEKALLELK 212          
BLAST of DY258166 vs. ExPASy Swiss-Prot
Match: KAD_PROMA (Adenylate kinase OS=Prochlorococcus marinus GN=adk PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.877e-22
Identity = 58/174 (33.33%), Postives = 104/174 (59.77%), Query Frame = 2
Query:  221 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFE-AVTKIEP--EFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVK 733
            LG PG+GKGTQ + I +  G+ HLS GDLLR E+  G++ G   + ++ +G++V  E+ I +++K + +  ++ +L+DGFPRN    +  +  + +I    E VL  +  +E +  R+L R  GR+DDN   I+ R K++ + + P+V +Y+ +G ++ I+    V +V   +K
Sbjct:    8 LGPPGAGKGTQASLICKDQGFLHLSTGDLLREEVSGGTDLGKKAELIMNKGELVSDEIVISIVEKRLIKY-SEGWLLDGFPRNLAQASLLQNLLGRISQPIEIVLLIEIDDEILTERMLGR--GRKDDNKAVIKNRLKIYKDQTSPLVDHYKKQGILKSINGCGSVEDVNSRIK 178          
BLAST of DY258166 vs. ExPASy Swiss-Prot
Match: KAD_HYDS0 (Adenylate kinase OS=Hydrogenobaculum sp. (strain Y04AAS1) GN=adk PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.877e-22
Identity = 59/205 (28.78%), Postives = 103/205 (50.24%), Query Frame = 2
Query:  221 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRNQ-----------------------------GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAV 739
            LG PGSGKGTQ A +     + H+S GD+LRAE+   S  G   +  +K+G +VP ++ I +++  + E+ +  ++ DGFPRN     AFE +    +++ + V +FD  ++ + +R+  R                                R+DD  E I  R +V+ E + P+++YY+ K K+  + A     EVF+ +K++
Sbjct:    6 LGPPGSGKGTQGALLKSELSFEHISTGDMLRAEVSKKSPLGLKAEEYMKQGLLVPDDLIIAMIKNILTEAPHKNYVFDGFPRNVNQAEAFETMLNTMRLQVDKVFYFDLEDDVIIKRLSGRRVCPKCGATYNIYYQKPKNDTLCDNDATPLIQRDDDKEEVIVNRLRVYKEQTFPLIEYYKYKNKLFVVSADGTQEEVFEKLKSM 210          
BLAST of DY258166 vs. ExPASy Swiss-Prot
Match: KAD_ECO8A (Adenylate kinase OS=Escherichia coli O8 (strain IAI1) GN=adk PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.758e-22
Identity = 68/201 (33.83%), Postives = 102/201 (50.75%), Query Frame = 2
Query:  221 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLL-QKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN-----------------------------QGREDDNVETIRKRFKVFLESSLPVVQYYEAKG-----KVRKIDAAKPVAEV 718
            LG PG+GKGTQ   I+E +G   +S GD+LRA +KSGSE G   ++++  GK+V  E+ I L+ ++  +E  ++ FL+DGFPR      A +    I  ++VL FD  +E +  RI+ R                                R+DD  ET+RKR   + + + P++ YY  +      K  K+D  KPVAEV
Sbjct:    6 LGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCHNGFLLDGFPRTIPQADAMKE-AGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEV 205          
BLAST of DY258166 vs. ExPASy Swiss-Prot
Match: KAD_CORK4 (Adenylate kinase OS=Corynebacterium kroppenstedtii (strain DSM 44385 / CCUG 35717) GN=adk PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.758e-22
Identity = 67/183 (36.61%), Postives = 105/183 (57.38%), Query Frame = 2
Query:  221 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQ-KAMEESGNDKFLIDGFPRNEENRAAFEAV-----TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEV----FDAVKAV 739
            LG PG+GKGTQ A + +  G  H+S GDL R  I + +E G   ++ I  GK+VP+ VT+ +++ +  ++   D FL+DGFPR  E     + +     TK++   VL FD SE+ +  R+L R  GR DD  E IR R KV+ + + P+++YY  K  + +I A   V ++     +A+KA+
Sbjct:    6 LGPPGAGKGTQAAILSDKLGVPHVSTGDLFRENIGNNTELGQEAKSYIDAGKLVPTSVTVNMVKDRLSQDDAADGFLLDGFPRTVEQGDELKNILDGLGTKLDA--VLQFDVSEDVVVERMLAR--GRADDTEEVIRTRLKVYRDETAPLLEYY--KDSIIRIVAEGSVEDINERTMEALKAL 182          
BLAST of DY258166 vs. ExPASy Swiss-Prot
Match: KAD2_CAEEL (Adenylate kinase 2, mitochondrial OS=Caenorhabditis elegans GN=let-754 PE=2 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 3.758e-22
Identity = 72/218 (33.03%), Postives = 109/218 (50.00%), Query Frame = 2
Query:  221 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-SGNDKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNR----NQG-------------------------REDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEV---FDAVKAVFTPKDEKAA 766
            +G PGSGKGTQ     + +   HL+ GDLLRAE+ SGSE G  ++  +  GK+V  EV  KL+++ +E+      F++DGFPR        + +    K   + V+ F+ +++ + RRI  R      G                         R DDN ET+RKR   + + ++P+V YY+  G    +DAAKP+ +V    D V A FT K E+ +
Sbjct:   32 IGPPGSGKGTQAPAFAQKYFSCHLATGDLLRAEVASGSEFGKELKATMDAGKLVSDEVVCKLIEQKLEKPECKYGFILDGFPRTSGQAEKLDEILERRKTPLDTVVEFNIADDLLVRRITGRLFHIASGRSYHLEFKPPKVPMKDDLTGEPLIRRSDDNEETLRKRLVQYHQMTVPLVDYYKKHGVHVAVDAAKPMTDVKAHIDQVFAKFTQKKERVS 249          
BLAST of DY258166 vs. ExPASy Swiss-Prot
Match: KAD_STRPZ (Adenylate kinase OS=Streptococcus pyogenes serotype M49 (strain NZ131) GN=adk PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.908e-22
Identity = 67/213 (31.46%), Postives = 105/213 (49.30%), Query Frame = 2
Query:  221 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES--GNDKFLIDGFPRNEENRAAFEAV-------------TKIEPEFVLFFDCSEEEMERRILNRNQG--------------------REDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVF-DAVKAVFTPK 751
            +G PG+GKGTQ A IVE FG  H+S GD+ RA + + +E G + ++ I +G++VP EVT  ++++ + E       FL+DG+PR  E   A +A               K++P       C  E +  RI+NR  G                    REDD  ET+++R  V +    P++++Y   G V  I+  + + +VF D  KA+   K
Sbjct:    6 IGLPGAGKGTQAAKIVEEFGVAHISTGDMFRAAMANQTEMGRLAKSYIDKGELVPDEVTNGIVKERLAEDDIAEKGFLLDGYPRTIEQAHALDATLEELGLRLDGVINIKVDP------SCLVERLSGRIINRKTGETFHKVFNPPVDYKEEDYYQREDDKPETVKRRLDVNMAQGEPILEHYRKLGLVTDIEGNQEITDVFADVEKALLELK 212          
BLAST of DY258166 vs. ExPASy Swiss-Prot
Match: KAD_STRPM (Adenylate kinase OS=Streptococcus pyogenes serotype M28 GN=adk PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.908e-22
Identity = 67/213 (31.46%), Postives = 105/213 (49.30%), Query Frame = 2
Query:  221 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES--GNDKFLIDGFPRNEENRAAFEAV-------------TKIEPEFVLFFDCSEEEMERRILNRNQG--------------------REDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVF-DAVKAVFTPK 751
            +G PG+GKGTQ A IVE FG  H+S GD+ RA + + +E G + ++ I +G++VP EVT  ++++ + E       FL+DG+PR  E   A +A               K++P       C  E +  RI+NR  G                    REDD  ET+++R  V +    P++++Y   G V  I+  + + +VF D  KA+   K
Sbjct:    6 IGLPGAGKGTQAAKIVEEFGVAHISTGDMFRAAMANQTEMGRLAKSYIDKGELVPDEVTNGIVKERLAEDDIAEKGFLLDGYPRTIEQAHALDATLEELGLRLDGVINIKVDP------SCLVERLSGRIINRKTGETFHKVFNPPVDYKEEDYYQREDDKPETVKRRLDVNMAQGEPILEHYRKLGLVTDIEGNQEITDVFADVEKALLELK 212          
The following BLAST results are available for this feature:
BLAST of DY258166 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
KAD_ECO272.203e-2233.17Adenylate kinase OS=Escherichia coli O127:H6 (stra... [more]
KAD_STRA52.877e-2231.92Adenylate kinase OS=Streptococcus agalactiae serot... [more]
KAD_STRA32.877e-2231.92Adenylate kinase OS=Streptococcus agalactiae serot... [more]
KAD_PROMA2.877e-2233.33Adenylate kinase OS=Prochlorococcus marinus GN=adk... [more]
KAD_HYDS02.877e-2228.78Adenylate kinase OS=Hydrogenobaculum sp. (strain Y... [more]
KAD_ECO8A3.758e-2233.83Adenylate kinase OS=Escherichia coli O8 (strain IA... [more]
KAD_CORK43.758e-2236.61Adenylate kinase OS=Corynebacterium kroppenstedtii... [more]
KAD2_CAEEL3.758e-2233.03Adenylate kinase 2, mitochondrial OS=Caenorhabditi... [more]
KAD_STRPZ4.908e-2231.46Adenylate kinase OS=Streptococcus pyogenes serotyp... [more]
KAD_STRPM4.908e-2231.46Adenylate kinase OS=Streptococcus pyogenes serotyp... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAB3BE04ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258166 ID=DY258166; Name=DY258166; organism=Citrus clementina; type=EST; length=996bp
GACAACAACAAAAAAACTTACATTGGCAATTGGCATCCCTCTGCCTTCTT
TCTTTCCCTCTTTATTCTTCTCTCTCTCTCCAAACAAAACAACGCTCGCA
ATTCGCTAAGATCGGTTATTCAGACTGAGTTAGTTGGCGCTGATGGGAAC
TGTGGTTGAAACTCCTGTCAAGGAAGCAGATGCTACCGTAACTGTGAAGA
AGCCCACTGTTGTTTTTGTTTTGGGTGGACCAGGCAGTGGAAAAGGAACC
CAGTGCGCAAACATTGTTGAACACTTTGGATACACCCATCTCAGTGCTGG
TGATCTTCTCAGAGCCGAAATCAAATCTGGCTCTGAAAATGGAACCATGA
TTCAAAACATGATTAAAGAGGGAAAAATCGTTCCTTCAGAGGTCACAATT
AAGCTTCTCCAAAAAGCAATGGAGGAAAGTGGAAATGATAAATTTCTCAT
CGATGGTTTTCCCAGAAACGAGGAAAATCGTGCTGCATTTGAAGCTGTTA
CCAAAATTGAGCCAGAATTCGTTCTGTTTTTTGACTGTTCTGAGGAGGAG
ATGGAGAGGCGCATTTTGAATAGGAATCAGGGAAGAGAAGATGATAACGT
TGAGACAATTAGGAAGCGGTTTAAGGTTTTCTTAGAATCTAGTCTCCCTG
TGGTTCAATATTATGAAGCTAAGGGTAAAGTTCGGAAGATTGATGCTGCA
AAGCCTGTTGCAGAGGTTTTTGATGCTGTTAAAGCTGTTTTTACCCCAAA
AGATGAGAAGGCTGCTGCTTANGTCTTCTCTGTCCAGAGTATCAGATTTA
ATATCAAGGTGGTGGTATTGTTGTTGGCTGCTGCCTATTATTGTACTTTA
TTATTATGAGGTTATTATGTCACATGTTTTACTAAAATGTCATAAAAGTT
CATAATGTATCATGATATTTATTCCTGTTTGCCTAAGTATTCTTGTTATT
GAAACTGAAAACCAAGATCAAAATTTATAAAACAGCCTTGATGCTT
back to top