DY258175

Overview
NameDY258175
Unique NameDY258175
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length860
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig26 contig Ccv1_Contig26:1445..2304. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258175 vs. ExPASy Swiss-Prot
Match: CH60_THELT (60 kDa chaperonin OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=groL PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.214e-31
Identity = 78/159 (49.06%), Postives = 104/159 (65.41%), Query Frame = 3
Query:    3 VGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGANIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVV----EIKEPEPAMP 467
            VGA TETELKEKK R+EDAL+AT+AA           TL+R    V+ + + LD DE KVGA IV +AL  P++ IA+NAG +G+V+ EK+L+S    YG++A  G Y D+  AGIIDP KV R  L++A+S+A   L ++ +VV    E KE  PAMP
Sbjct:  379 VGAATETELKEKKHRIEDALSATRAAVEEGIVPGGGVTLIRSRKAVEDVLKELDGDE-KVGAMIVYKALEAPIRQIAENAGYDGAVIIEKILASKEESYGFDALKGEYTDMFKAGIIDPAKVTRSALQNAASIAGMLLTTEVLVVEKPEEKKEAAPAMP 536          
BLAST of DY258175 vs. ExPASy Swiss-Prot
Match: CH60_THEM4 (60 kDa chaperonin OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=groL PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.071e-31
Identity = 78/160 (48.75%), Postives = 100/160 (62.50%), Query Frame = 3
Query:    3 VGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGANIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPE-----PAMP 467
            VGA TETELKEKK R+EDAL+AT+AA           TLLR    V+ I E LD DE K+GA IV  AL  P+  IAKNAG +G+++  KVL  D+  YG++A  G Y D+   GIIDP KV R  L++A+S+A   L ++ +VVE  EP+     P MP
Sbjct:  379 VGAATETELKEKKHRIEDALSATRAAVEEGIVPGGGITLLRARKPVEKIVEELDGDE-KIGAKIVYEALSAPINQIAKNAGYDGAIIIHKVLEQDDPAYGFDALKGEYCDMFERGIIDPAKVTRSALQNAASIAGMLLTTEVLVVEKPEPKNNNPMPEMP 537          
BLAST of DY258175 vs. ExPASy Swiss-Prot
Match: CH60_DESDG (60 kDa chaperonin OS=Desulfovibrio desulfuricans (strain G20) GN=groL PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.071e-31
Identity = 78/165 (47.27%), Postives = 103/165 (62.42%), Query Frame = 3
Query:    3 VGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGANIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVE-IKEPEPAMPAGNPMDNSG 494
            VGA TETE+KEKK RVEDALNAT+AA            L+R    +D +K    +D+E  G  I++RA+  PL+ IA NAG  GS++ EKV    +  +G+NAATG +EDL+AAG+IDP KV R  L++A+SVA   L ++C + E  KE  PA PA   M   G
Sbjct:  381 VGAATETEMKEKKDRVEDALNATRAAVEEGIVPGGGTALVRCCKVLDDVKPA--DDDEAAGVTIIRRAIEEPLRQIAANAGFEGSIICEKVKEGKD-AFGFNAATGEFEDLIAAGVIDPKKVSRIALQNAASVASLLLTTECAIAEKPKEDAPAAPAMGGMGGMG 542          
BLAST of DY258175 vs. ExPASy Swiss-Prot
Match: CH60_CAMFF (60 kDa chaperonin OS=Campylobacter fetus subsp. fetus (strain 82-40) GN=groL PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.071e-31
Identity = 81/164 (49.39%), Postives = 104/164 (63.41%), Query Frame = 3
Query:    3 VGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGANIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 494
            VGA TETE+KEKK RV+DALNATKAA            L++  ++V+    +L  DE  +GA IVKRAL  PL+ IA+NAG +  VV+  V  +D   YG+NAA+G Y D+  AGIIDP KV R  L++A SVA   L ++  V EIKE +PAMP   PM + G
Sbjct:  380 VGAATETEMKEKKDRVDDALNATKAAVEEGIVVGGGAALIKAGNRVNL---SLKGDE-LIGAEIVKRALFAPLRQIAENAGFDAGVVANSVSCADCPNYGFNAASGEYVDMFEAGIIDPVKVERIALQNAVSVASLLLTTEATVSEIKEDKPAMP---PMPDMG 536          
BLAST of DY258175 vs. ExPASy Swiss-Prot
Match: CH602_SYNS3 (60 kDa chaperonin 2 OS=Synechococcus sp. (strain CC9311) GN=groL2 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.071e-31
Identity = 75/160 (46.88%), Postives = 104/160 (65.00%), Query Frame = 3
Query:    3 VGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGANIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPM 482
            VGA TETE+K+KKLR+EDA+NATKAA           TL  ++  ++    +  + EE +GANIV  AL  PL  IA+NAGVNG+VV+E V  S +   GYNAA G Y D+++AGI+DP KV R  L++A+S+A   L ++C+V ++ E + A  AG  M
Sbjct:  379 VGAATETEMKDKKLRLEDAINATKAAVEEGIVPGGGTTLAHMAPALEEWAASNLSGEELIGANIVASALTAPLMRIAENAGVNGAVVAENV-KSKSFNEGYNAANGEYVDMLSAGIVDPAKVTRSGLQNAASIAGMVLTTECIVADMPEKKEAAAAGGGM 537          
BLAST of DY258175 vs. ExPASy Swiss-Prot
Match: CH602_RHORT (60 kDa chaperonin 2 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=groL2 PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.705e-31
Identity = 74/166 (44.58%), Postives = 108/166 (65.06%), Query Frame = 3
Query:    3 VGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGANIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 500
            VG  TETE+KEKK RV+DA++AT+AA            LL     +D++K    N ++ VG  IV+RAL  P++ IA+NAGV+G+VV+ K+L + +  +GYNA TG YE+L+ AG+IDPTKVVR  L+ A+S+A   + ++ +V EI E + AMP+ +     G G
Sbjct:  381 VGGATETEVKEKKDRVDDAMHATRAAVEEGVVAGGGVALLHAIRSLDSVKGA--NPDQNVGIEIVRRALQAPVRQIAENAGVDGAVVAGKLLENSDTDFGYNAQTGIYENLVTAGVIDPTKVVRAALQGAASIAGLLITTEAMVAEIPEKKDAMPSPDMGGMGGMG 544          
BLAST of DY258175 vs. ExPASy Swiss-Prot
Match: CH602_PROMA (60 kDa chaperonin 2 OS=Prochlorococcus marinus GN=groL2 PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.705e-31
Identity = 74/157 (47.13%), Postives = 104/157 (66.24%), Query Frame = 3
Query:    3 VGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGANIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAG 473
            VGA TETE+K+KKLR+EDA+NATKAA           TL  L+S+V +   +  + EE +GANIV+ AL  PL  IA+NAG NG+V++E V S   +  GYNAA+G Y D+++AGI+DP KV R  L++ASS+A   L ++C+V ++ E +     G
Sbjct:  379 VGAATETEMKDKKLRLEDAINATKAAVEEGIVPGGGTTLAHLASEVHSWAASSLSGEELIGANIVEAALTAPLMRIAENAGANGAVIAEHVKSKPLND-GYNAASGEYVDMLSAGIVDPAKVTRSGLQNASSIAGMVLTTECIVADLPEKKDVASGG 534          
BLAST of DY258175 vs. ExPASy Swiss-Prot
Match: CH602_ANADE (60 kDa chaperonin 2 OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=groL2 PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.705e-31
Identity = 77/164 (46.95%), Postives = 101/164 (61.59%), Query Frame = 3
Query:    3 VGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGANIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 494
            VGA TETE+KEKK RVEDAL+AT+AA             LR    ++ +K    N+ EKVG +IV+RA+  PL+ I+ N G  GS+V  KV  +    +G+NAATG YEDL+ AG+IDPTKV R  L++A+SVA   L +  +V E  + E A PAG  M   G
Sbjct:  381 VGAATETEMKEKKARVEDALHATRAAVEEGIVPGGGVAYLRCVKALEGVKV---NEGEKVGLDIVRRAIEEPLRQISGNGGYEGSIVVNKVKEAKEAAFGFNAATGEYEDLVKAGVIDPTKVSRSALQNAASVASLMLTTMAMVAEKPKEESAAPAGGGMGGMG 541          
BLAST of DY258175 vs. ExPASy Swiss-Prot
Match: CH601_PROMT (60 kDa chaperonin 1 OS=Prochlorococcus marinus (strain NATL2A) GN=groL1 PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.533e-31
Identity = 75/160 (46.88%), Postives = 104/160 (65.00%), Query Frame = 3
Query:    3 VGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGANIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPM 482
            VGA TETE+K+KKLR+EDA+NATKAA           TL  L+  +     +  + EE +GANIV+ AL  PL  IA+NAG NG+VV+E V S   +  GYNAATG Y D+++AGI+DP KV R  L++A+S+A   L ++C+V ++ E + +  AG  M
Sbjct:  379 VGAATETEMKDKKLRLEDAINATKAAVEEGIVPGGGTTLAHLAPALGDWSSSNLSGEELIGANIVEAALTSPLMRIAENAGANGAVVAENVKSKPVND-GYNAATGEYVDMLSAGIVDPAKVTRSGLQNAASIAGMVLTTECIVADLPEKKDSSSAGGGM 537          
BLAST of DY258175 vs. ExPASy Swiss-Prot
Match: CH601_ANASP (60 kDa chaperonin 1 OS=Anabaena sp. (strain PCC 7120) GN=groL1 PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.533e-31
Identity = 75/167 (44.91%), Postives = 103/167 (61.68%), Query Frame = 3
Query:    3 VGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGANIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYGY 503
            VGA TETE+K+KKLR+EDA+NATKAA           TL  L+ +++    +   DEE  GA IV RAL  PLK IA+NAG NG+V++E+V        G+NAAT  + D+  AGI+DP KV R  L++A+S+A   L ++C+VV+  EP+   PAG       + Y
Sbjct:  379 VGAATETEMKDKKLRLEDAINATKAAVEEGIVPGGGTTLAHLTPELEVWANSNLKDEELTGALIVARALPAPLKRIAENAGQNGAVIAERV-KEKAFNVGFNAATNEFVDMFEAGIVDPAKVTRSALQNAASIAGMVLTTECIVVDKPEPKDNAPAGAGAGGGDFDY 544          
The following BLAST results are available for this feature:
BLAST of DY258175 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_THELT1.214e-3149.0660 kDa chaperonin OS=Thermotoga lettingae (strain ... [more]
CH60_THEM42.071e-3148.7560 kDa chaperonin OS=Thermosipho melanesiensis (st... [more]
CH60_DESDG2.071e-3147.2760 kDa chaperonin OS=Desulfovibrio desulfuricans (... [more]
CH60_CAMFF2.071e-3149.3960 kDa chaperonin OS=Campylobacter fetus subsp. fe... [more]
CH602_SYNS32.071e-3146.8860 kDa chaperonin 2 OS=Synechococcus sp. (strain C... [more]
CH602_RHORT2.705e-3144.5860 kDa chaperonin 2 OS=Rhodospirillum rubrum (stra... [more]
CH602_PROMA2.705e-3147.1360 kDa chaperonin 2 OS=Prochlorococcus marinus GN=... [more]
CH602_ANADE2.705e-3146.9560 kDa chaperonin 2 OS=Anaeromyxobacter dehalogena... [more]
CH601_PROMT3.533e-3146.8860 kDa chaperonin 1 OS=Prochlorococcus marinus (st... [more]
CH601_ANASP3.533e-3144.9160 kDa chaperonin 1 OS=Anabaena sp. (strain PCC 71... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3BF04ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258175 ID=DY258175; Name=DY258175; organism=Citrus clementina; type=EST; length=860bp
AGGTTGGAGCTCAAACTGAGACAGAGCTTAAAGAGAAGAAGTTGAGAGTC
GAAGATGCTCTTAATGCAACAAAGGCTGCAGTTGAGGAAGGTATCGTAGT
TGGTGGCGGATGTACTCTACTGAGACTCTCATCTAAGGTGGATGCCATTA
AGGAAACCCTTGATAATGATGAAGAAAAGGTTGGAGCAAATATTGTTAAA
AGAGCTCTGTGCTACCCACTGAAATTAATTGCCAAAAATGCCGGTGTTAA
TGGAAGTGTGGTCAGCGAGAAGGTGCTTTCAAGTGACAATCATAAATATG
GATACAATGCTGCAACTGGAAACTACGAAGATCTAATGGCTGCAGGAATT
ATTGATCCTACCAAGGTGGTTAGATGTTGCTTGGAGCATGCTTCCTCGGT
GGCAAAAACCTTCTTGATGTCCGACTGTGTGGTGGTTGAGATCAAGGAGC
CTGAACCCGCTATGCCTGCGGGTAACCCTATGGACAACTCAGGATATGGA
TACTAAGCTAATTAACAAGGTCACGGGAGGCAAGCAAATAAGGTTCTGAC
TTCGTTATAGCAACTATCTTTCAGTTTGACAGCGTTGGGTTCTCTTCTTC
TTGTAAATTCAATTACTCGACTTAGTAGAGTTTATGGATTCTGGTGAGGA
TAGCTTGCCAGAGTACGGCTCGTATTAATTTGCAATTAGATGTACAATTG
CAATGATTTTGAACTTTTTGAGTGAAAGAAATTTTATTTTGCTCATCTCC
TTCACAGTCTGATACTAATTCTGCGGGTACTCACATTTGTTACTGTTCAC
TGTTCCTCGAGCTTAAATGTTATAACTCTTGGTCTTGAATGGGTACATGA
TTTTACACAT
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