DY258175

Overview
NameDY258175
Unique NameDY258175
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length860
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig26 contig Ccv1_Contig26:1445..2304. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258175 vs. ExPASy Swiss-Prot
Match: CH60_THEMA (60 kDa chaperonin OS=Thermotoga maritima GN=groL PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.614e-31
Identity = 75/158 (47.47%), Postives = 105/158 (66.46%), Query Frame = 3
Query:    3 VGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGANIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVV---EIKEPEPAMP 467
            VGA TETELKEKK R+EDAL+AT+AA           TLLR    V+ + E L+ DE K+GA IV +AL  P+K IA+NAG +G+V+ EK+LS+D+  YG++A  G Y ++   GIIDP KV R  L++A+S+A   L ++ ++V   E K+  P+MP
Sbjct:  379 VGAATETELKEKKHRIEDALSATRAAVEEGIVPGGGVTLLRARKAVEKVIEELEGDE-KIGAQIVYKALSAPIKQIAENAGYDGAVIIEKILSNDDPAYGFDALRGEYCNMFERGIIDPAKVTRSALQNAASIAGMLLTTEVLIVEKPEEKKETPSMP 535          
BLAST of DY258175 vs. ExPASy Swiss-Prot
Match: CH60_ACIBL (60 kDa chaperonin OS=Acidobacteria bacterium (strain Ellin345) GN=groL PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.614e-31
Identity = 75/157 (47.77%), Postives = 99/157 (63.06%), Query Frame = 3
Query:    3 VGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGANIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAG 473
            VGA TETE+KEKK RVEDA++AT+AA            L+R    VDA+K T D   E +GANI+KRAL  PL+ I  NAG  G++V  K+    +  YGYNA T  Y DL+ AG+IDPTKV R  L++A S+A   L ++ ++ EI E + + PAG
Sbjct:  390 VGAATETEMKEKKARVEDAMHATRAAVEEGIVPGGGVALIRCVEAVDALKLTGD---EGIGANIIKRALEEPLRQIVGNAGEEGAIVVGKIRDHKDPHYGYNAQTSEYVDLVKAGVIDPTKVTRTALQNAGSIAGLMLTTEALISEIPEEKKSEPAG 543          
BLAST of DY258175 vs. ExPASy Swiss-Prot
Match: CH602_RHIEC (60 kDa chaperonin 2 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=groL2 PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.614e-31
Identity = 75/163 (46.01%), Postives = 103/163 (63.19%), Query Frame = 3
Query:    3 VGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGANIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVE--IKEPEPAMPAGNPMD 485
            VG  TE E+KEKK RV+DAL+AT+AA            LLR    +D+IK    ND+++VG +IV+RA+  P++ IA+NAG  GS++  K+    +  YG+NA TG Y DL A G+IDP KVVR  L+ A+SVA   + ++ ++ E   KE  PAMPAG  MD
Sbjct:  381 VGGSTEVEVKEKKDRVDDALHATRAAVEEGILPGGGVALLRAVKALDSIKTA--NDDQRVGVDIVRRAIEAPVRQIAENAGAEGSIIVGKLREKSDFSYGWNAQTGEYGDLYAQGVIDPAKVVRTALQDAASVAGLLVTTEAMIAEKPKKEAAPAMPAGAGMD 541          
BLAST of DY258175 vs. ExPASy Swiss-Prot
Match: CH602_PROM5 (60 kDa chaperonin 2 OS=Prochlorococcus marinus (strain MIT 9515) GN=groL2 PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.614e-31
Identity = 74/167 (44.31%), Postives = 106/167 (63.47%), Query Frame = 3
Query:    3 VGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGANIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYGY 503
            VGA TETE+K+KKLR+EDA+NATKAA           TL  L+  +    +   + EE +GANIV+ +L  PL  IA+NAG NG+V++E V S   +  G+NAATG Y D+ +AGI+DP KV R  L++A+S+A   L ++C+V ++ E + + PAG P     + Y
Sbjct:  379 VGAATETEMKDKKLRLEDAINATKAAVEEGIVPGGGTTLAHLAPILKEWADATLSGEELIGANIVEASLTAPLMRIAENAGSNGAVIAENVKSKPFND-GFNAATGEYVDMSSAGIVDPAKVTRSGLQNAASIAGMVLTTECIVADMPEKKESAPAGAPGMGGDFDY 544          
BLAST of DY258175 vs. ExPASy Swiss-Prot
Match: CH601_SYNY3 (60 kDa chaperonin 1 OS=Synechocystis sp. (strain PCC 6803) GN=groL1 PE=1 SV=4)

HSP 1 Score: 135.191 bits (339), Expect = 4.614e-31
Identity = 79/165 (47.88%), Postives = 106/165 (64.24%), Query Frame = 3
Query:    3 VGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGANIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGY 497
            VGA TETE+K++KLR+EDA+NATKAA           TL  L+ +++        DEE  GA IV RAL  PLK IA+NAG NG+V+SE+V   +    GYNAA+  Y D++AAGI+DP KV R  L++A+S+A   L ++C+VV+  E E A PAG P  +  Y
Sbjct:  379 VGAATETEMKDRKLRLEDAINATKAAVEEGIVPGGGTTLAHLAPQLEDWATGNLKDEELTGALIVARALPAPLKRIAENAGQNGAVISERVKEKE-FNVGYNAASLEYVDMLAAGIVDPAKVTRSALQNAASIAGMVLTTECIVVDKPEKEKA-PAGAPGGDFDY 541          
BLAST of DY258175 vs. ExPASy Swiss-Prot
Match: CH60_THESQ (60 kDa chaperonin OS=Thermotoga sp. (strain RQ2) GN=groL PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 6.026e-31
Identity = 73/156 (46.79%), Postives = 103/156 (66.03%), Query Frame = 3
Query:    3 VGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGANIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPA 470
            VGA TETELKEKK R+EDAL+AT+AA           TLLR    V+ + E L+ DE K+GA IV +AL  P+K IA+NAG +G+V+ EK+LS+D+  YG++A  G Y ++   GIIDP KV R  L++A+S+A   L ++ ++VE  E +   P+
Sbjct:  379 VGAATETELKEKKHRIEDALSATRAAVEEGIVPGGGVTLLRARKAVEKVIEELEGDE-KIGAQIVYKALSAPIKQIAENAGYDGAVIIEKILSNDDPAYGFDALRGEYCNMFERGIIDPAKVTRSALQNAASIAGMLLTTEVLIVEKPEEKKETPS 533          
BLAST of DY258175 vs. ExPASy Swiss-Prot
Match: CH60_THEP1 (60 kDa chaperonin OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=groL PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 6.026e-31
Identity = 73/156 (46.79%), Postives = 103/156 (66.03%), Query Frame = 3
Query:    3 VGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGANIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPA 470
            VGA TETELKEKK R+EDAL+AT+AA           TLLR    V+ + E L+ DE K+GA IV +AL  P+K IA+NAG +G+V+ EK+LS+D+  YG++A  G Y ++   GIIDP KV R  L++A+S+A   L ++ ++VE  E +   P+
Sbjct:  379 VGAATETELKEKKHRIEDALSATRAAVEEGIVPGGGVTLLRARKAVEKVIEELEGDE-KIGAQIVYKALSAPIKQIAENAGYDGAVIIEKILSNDDPAYGFDALRGEYCNMFERGIIDPAKVTRSALQNAASIAGMLLTTEVLIVEKPEEKKETPS 533          
BLAST of DY258175 vs. ExPASy Swiss-Prot
Match: RUB2_BRANA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 7.870e-31
Identity = 75/156 (48.08%), Postives = 107/156 (68.59%), Query Frame = 3
Query:    3 VGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGANIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPA 470
            VGA TETEL+++KLR+EDA NAT AA           TL+ LS+ + AIKET ++ + ++GA+IV++AL     LIA+NAG+ G VV EK++ S+  + GYNA T  YE+L+ AG+IDP KV RC L++A+SVA   L +  +VV+  +P+P  PA
Sbjct:  423 VGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGATLVHLSTVIPAIKETFEDADVRLGADIVQKAL-VAQSLIAQNAGIEGEVVVEKIMFSE-WELGYNAMTDTYENLLEAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVD--KPKPKAPA 574          
BLAST of DY258175 vs. ExPASy Swiss-Prot
Match: CH60_THENE (60 kDa chaperonin OS=Thermotoga neapolitana GN=groL PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 7.870e-31
Identity = 73/156 (46.79%), Postives = 103/156 (66.03%), Query Frame = 3
Query:    3 VGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGANIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPA 470
            VGA TETELKEKK R+EDAL+AT+AA           TLLR    V+ + E LD DE K+GA IV +AL  P++ IA+NAG +G+V+ EK+L+SD+  YG++A  G + ++   GIIDP KV R  L++A+S+A   L ++ +VVE  E +   P+
Sbjct:  379 VGAATETELKEKKHRIEDALSATRAAVEEGIVPGGGVTLLRSRKAVEKLLEELDGDE-KIGAQIVYKALSAPIRQIAENAGYDGAVIIEKILASDDPAYGFDALRGEFGNMFEKGIIDPAKVTRSALQNAASIAGMLLTTEVLVVEKPEEKKETPS 533          
BLAST of DY258175 vs. ExPASy Swiss-Prot
Match: CH60_LAWIP (60 kDa chaperonin OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=groL PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 7.870e-31
Identity = 75/155 (48.39%), Postives = 100/155 (64.52%), Query Frame = 3
Query:    3 VGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGANIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMP 467
            VGA TETE+KEKK RVEDALNAT+AA             +R    +D IK    +D+E  G NI++R+L  PL+ IA NAG  GS+V EKV  + +  +G+NAA+G YEDL+ AG+IDP KV R  L++A+SVA   L ++C + E  EP+  MP
Sbjct:  381 VGAATETEMKEKKDRVEDALNATRAAVEEGIVPGGGTAFVRSIKVLDDIKPA--DDDELAGLNIIRRSLEEPLRQIAANAGYEGSIVVEKVREAKDG-FGFNAASGEYEDLIKAGVIDPKKVTRIALQNAASVASLLLTTECAIAEKPEPKKDMP 532          
The following BLAST results are available for this feature:
BLAST of DY258175 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_THEMA4.614e-3147.4760 kDa chaperonin OS=Thermotoga maritima GN=groL P... [more]
CH60_ACIBL4.614e-3147.7760 kDa chaperonin OS=Acidobacteria bacterium (stra... [more]
CH602_RHIEC4.614e-3146.0160 kDa chaperonin 2 OS=Rhizobium etli (strain CFN ... [more]
CH602_PROM54.614e-3144.3160 kDa chaperonin 2 OS=Prochlorococcus marinus (st... [more]
CH601_SYNY34.614e-3147.8860 kDa chaperonin 1 OS=Synechocystis sp. (strain P... [more]
CH60_THESQ6.026e-3146.7960 kDa chaperonin OS=Thermotoga sp. (strain RQ2) G... [more]
CH60_THEP16.026e-3146.7960 kDa chaperonin OS=Thermotoga petrophila (strain... [more]
RUB2_BRANA7.870e-3148.08RuBisCO large subunit-binding protein subunit alph... [more]
CH60_THENE7.870e-3146.7960 kDa chaperonin OS=Thermotoga neapolitana GN=gro... [more]
CH60_LAWIP7.870e-3148.3960 kDa chaperonin OS=Lawsonia intracellularis (str... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3BF04ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258175 ID=DY258175; Name=DY258175; organism=Citrus clementina; type=EST; length=860bp
AGGTTGGAGCTCAAACTGAGACAGAGCTTAAAGAGAAGAAGTTGAGAGTC
GAAGATGCTCTTAATGCAACAAAGGCTGCAGTTGAGGAAGGTATCGTAGT
TGGTGGCGGATGTACTCTACTGAGACTCTCATCTAAGGTGGATGCCATTA
AGGAAACCCTTGATAATGATGAAGAAAAGGTTGGAGCAAATATTGTTAAA
AGAGCTCTGTGCTACCCACTGAAATTAATTGCCAAAAATGCCGGTGTTAA
TGGAAGTGTGGTCAGCGAGAAGGTGCTTTCAAGTGACAATCATAAATATG
GATACAATGCTGCAACTGGAAACTACGAAGATCTAATGGCTGCAGGAATT
ATTGATCCTACCAAGGTGGTTAGATGTTGCTTGGAGCATGCTTCCTCGGT
GGCAAAAACCTTCTTGATGTCCGACTGTGTGGTGGTTGAGATCAAGGAGC
CTGAACCCGCTATGCCTGCGGGTAACCCTATGGACAACTCAGGATATGGA
TACTAAGCTAATTAACAAGGTCACGGGAGGCAAGCAAATAAGGTTCTGAC
TTCGTTATAGCAACTATCTTTCAGTTTGACAGCGTTGGGTTCTCTTCTTC
TTGTAAATTCAATTACTCGACTTAGTAGAGTTTATGGATTCTGGTGAGGA
TAGCTTGCCAGAGTACGGCTCGTATTAATTTGCAATTAGATGTACAATTG
CAATGATTTTGAACTTTTTGAGTGAAAGAAATTTTATTTTGCTCATCTCC
TTCACAGTCTGATACTAATTCTGCGGGTACTCACATTTGTTACTGTTCAC
TGTTCCTCGAGCTTAAATGTTATAACTCTTGGTCTTGAATGGGTACATGA
TTTTACACAT
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