DY258182 | Citrus Genome Database

Overview


Name	DY258182
Unique Name	DY258182
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	713

Libraries


Library Name	Type
AbsCOv1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

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BLAST of DY258182 vs. ExPASy Swiss-Prot
Match: ALDH_AGABI (Aldehyde dehydrogenase OS=Agaricus bisporus GN=aldA PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 5.402e-32
Identity = 50/107 (46.73%), Postives = 74/107 (69.16%), Query Frame = 2

Query:   11 ILKPSELASVTCLELAEVCREVGLPPGILNIVTGLGPEAGAPLVSHPHVDKIAFTGSNATGIRIMAAAAPM-VKPVSLELGGKSPIIVFEDVDLDKAVEWT---IFW 319
            +LKPSE   ++ L +  + +E G PPG++N+VTG G   G  + SH  +DK+AFTGS   G ++M AAA   +K V+LELGGKSP+++F+D DL+++V WT   +FW
Sbjct:  191 VLKPSEFTPLSALRMCALIQEAGFPPGVVNVVTGYGSTTGQAISSHMKIDKVAFTGSTLVGRKVMEAAAKSNLKNVTLELGGKSPVVIFDDADLEQSVNWTAHGLFW 297

HSP 2 Score: 34.2686 bits (77), Expect = 5.402e-32
Identity = 15/40 (37.50%), Postives = 25/40 (62.50%), Query Frame = 1

Query:  418 IQNIKISDSLEESCKFGPVVSEGQYEKILKFLSNGKNEGA 537
            I+ IK+ D        GP VS+ QY++I+ ++ +G+ EGA
Sbjct:  327 IKEIKLGDPFGLGIDQGPQVSQIQYDRIMSYIESGRAEGA 366

HSP 3 Score: 33.4982 bits (75), Expect = 5.402e-32
Identity = 13/32 (40.62%), Postives = 19/32 (59.38%), Query Frame = 3

Query:  318 GCFWTNGQICSATSRLLVHESIAANFLKRMVE 413
            G FW +GQ C A +R+ V E I   FL++  +
Sbjct:  294 GLFWNHGQACCAGTRIFVQEGIYDKFLQKFTD 325

[Close]

BLAST of DY258182 vs. ExPASy Swiss-Prot
Match: AL1A1_RABIT (Retinal dehydrogenase 1 OS=Oryctolagus cuniculus GN=ALDH1A1 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.184e-31
Identity = 54/100 (54.00%), Postives = 68/100 (68.00%), Query Frame = 2

Query:   11 ILKPSELASVTCLELAEVCREVGLPPGILNIVTGLGPEAGAPLVSHPHVDKIAFTGSNATGIRIMAAAAPM-VKPVSLELGGKSPIIVFEDVDLDKAVEW 307
            I+KP+E   +T L +A + +E G PPG++NIV G GP AGA + SH  +DK+AFTGS   G  I  AA    +K V+LELGGKSP IVF D DLD AVE+
Sbjct:  186 IVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDIDKVAFTGSTEVGKLIKEAAGKSNLKRVTLELGGKSPCIVFADADLDNAVEF 285

HSP 2 Score: 36.1946 bits (82), Expect = 1.184e-31
Identity = 18/37 (48.65%), Postives = 22/37 (59.46%), Query Frame = 3

Query:  318 GCFWTNGQICSATSRLLVHESIAANFLKRMVEGNPKH 428
            G F+  GQ C A SRL V ESI   F++R VE   K+
Sbjct:  289 GVFYHQGQCCIAASRLFVEESIYDEFVRRSVERAKKY 325

HSP 3 Score: 35.4242 bits (80), Expect = 1.184e-31
Identity = 22/63 (34.92%), Postives = 31/63 (49.21%), Query Frame = 1

Query:  466 GPVVSEGQYEKILKFLSNGKNEGAPFLVXXXXXXXFEKGDFLKKPTLQNV--ELRTTKGKILG 648
            GP + + QY KIL  + +GK EGA   +         KG F++     NV  E+R  K +I G
Sbjct:  338 GPQIDKEQYNKILDLIESGKKEGAK--LECGGGPWGNKGYFIQPTVFSNVTDEMRIAKEEIFG 398

[Close]

BLAST of DY258182 vs. ExPASy Swiss-Prot
Match: BETB_ERWCT (Betaine aldehyde dehydrogenase OS=Erwinia carotovora subsp. atroseptica GN=betB PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.286e-31
Identity = 52/101 (51.49%), Postives = 72/101 (71.29%), Query Frame = 2

Query:    5 AAILKPSELASVTCLELAEVCREVGLPPGILNIVTGLGPEAGAPLVSHPHVDKIAFTGSNATGIRIMA-AAAPMVKPVSLELGGKSPIIVFEDVDLDKAVE 304
            A I KPSE+ S+T L+LAE+  E GLP G+ N++TG G   G  L +HP + K++FTG  A+G  +MA AA   +K V++ELGGKSP+I+F+D DLDKA +
Sbjct:  172 AMIFKPSEVTSLTALKLAEIYTEAGLPAGVFNVLTGTGKSVGQALTTHPGIAKVSFTGGIASGKTVMANAAGSTLKDVTMELGGKSPLIIFDDADLDKAAD 272

HSP 2 Score: 47.3654 bits (111), Expect = 1.286e-31
Identity = 25/58 (43.10%), Postives = 35/58 (60.34%), Query Frame = 1

Query:  376 KALQQIF*KGWLKGIQNIKISDSLEESCKFGPVVSEGQYEKILKFLSNGKNEGAPFLV 549
            KALQ  F +  L  +Q I+  D  +ES  FGP+VS    E +L+++ +GK EGA  LV
Sbjct:  296 KALQAQFEEKILACVQRIRAGDPTDESVNFGPLVSFPHRESVLRYIESGKREGARVLV 353

[Close]

BLAST of DY258182 vs. ExPASy Swiss-Prot
Match: BETB_PECCP (Betaine aldehyde dehydrogenase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=betB PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.675e-31
Identity = 55/101 (54.46%), Postives = 72/101 (71.29%), Query Frame = 2

Query:    5 AAILKPSELASVTCLELAEVCREVGLPPGILNIVTGLGPEAGAPLVSHPHVDKIAFTGSNATGIRIMA-AAAPMVKPVSLELGGKSPIIVFEDVDLDKAVE 304
            A I KPSE+ S+T L+LAEV  E GLP G+ N++TG G   G  L +HP + K++FTG  A+G  +MA AA   +K V++ELGGKSP+IVFED DLDKA +
Sbjct:  172 AMIFKPSEVTSLTALKLAEVYTEAGLPAGVFNVLTGTGQSVGQALTTHPGIAKVSFTGGIASGKTVMANAAGSTLKDVTMELGGKSPLIVFEDADLDKAAD 272

HSP 2 Score: 45.0542 bits (105), Expect = 1.675e-31
Identity = 23/58 (39.66%), Postives = 36/58 (62.07%), Query Frame = 1

Query:  376 KALQQIF*KGWLKGIQNIKISDSLEESCKFGPVVSEGQYEKILKFLSNGKNEGAPFLV 549
            +ALQ  F +  L  +Q I+I +  +E+  FGP+VS    E +L+++ +GK EGA  LV
Sbjct:  296 QALQTQFEEKILARVQRIRIGNPTDEAVNFGPLVSFPHRESVLRYIESGKREGARVLV 353

[Close]

BLAST of DY258182 vs. ExPASy Swiss-Prot
Match: AL1A1_SHEEP (Retinal dehydrogenase 1 OS=Ovis aries GN=ALDH1A1 PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 2.593e-31
Identity = 54/100 (54.00%), Postives = 67/100 (67.00%), Query Frame = 2

Query:   11 ILKPSELASVTCLELAEVCREVGLPPGILNIVTGLGPEAGAPLVSHPHVDKIAFTGSNATGIRIMAAAAPM-VKPVSLELGGKSPIIVFEDVDLDKAVEW 307
            ++KP+E   +T L +  + +E G PPG++NIV G GP AGA + SH  VDK+AFTGS   G  I  AA    +K VSLELGGKSP IVF D DLD AVE+
Sbjct:  191 VVKPAEQTPLTALHMGSLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVDKVAFTGSTEVGKLIKEAAGKSNLKRVSLELGGKSPCIVFADADLDNAVEF 290

HSP 2 Score: 36.1946 bits (82), Expect = 2.593e-31
Identity = 18/37 (48.65%), Postives = 22/37 (59.46%), Query Frame = 3

Query:  318 GCFWTNGQICSATSRLLVHESIAANFLKRMVEGNPKH 428
            G F+  GQ C A SRL V ESI   F++R VE   K+
Sbjct:  294 GVFYHQGQCCIAASRLFVEESIYDEFVRRSVERAKKY 330

HSP 3 Score: 34.2686 bits (77), Expect = 2.593e-31
Identity = 21/63 (33.33%), Postives = 32/63 (50.79%), Query Frame = 1

Query:  466 GPVVSEGQYEKILKFLSNGKNEGAPFLVXXXXXXXFEKGDFLKKPTLQNV--ELRTTKGKILG 648
            GP + + QYEKIL  + +GK EGA   +         KG F++     +V  ++R  K +I G
Sbjct:  343 GPQIDKEQYEKILDLIESGKKEGAK--LECGGGPWGNKGYFIQPTVFSDVTDDMRIAKEEIFG 403

[Close]

BLAST of DY258182 vs. ExPASy Swiss-Prot
Match: AL1A1_BOVIN (Retinal dehydrogenase 1 OS=Bos taurus GN=ALDH1A1 PE=2 SV=3)

HSP 1 Score: 104.76 bits (260), Expect = 2.593e-31
Identity = 54/100 (54.00%), Postives = 67/100 (67.00%), Query Frame = 2

Query:   11 ILKPSELASVTCLELAEVCREVGLPPGILNIVTGLGPEAGAPLVSHPHVDKIAFTGSNATGIRIMAAAAPM-VKPVSLELGGKSPIIVFEDVDLDKAVEW 307
            ++KP+E   +T L +  + +E G PPG++NIV G GP AGA + SH  VDK+AFTGS   G  I  AA    +K VSLELGGKSP IVF D DLD AVE+
Sbjct:  191 VVKPAEQTPLTALHMGSLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVDKVAFTGSTEVGKLIKEAAGKSNLKRVSLELGGKSPCIVFADADLDNAVEF 290

HSP 2 Score: 36.1946 bits (82), Expect = 2.593e-31
Identity = 18/37 (48.65%), Postives = 22/37 (59.46%), Query Frame = 3

Query:  318 GCFWTNGQICSATSRLLVHESIAANFLKRMVEGNPKH 428
            G F+  GQ C A SRL V ESI   F++R VE   K+
Sbjct:  294 GVFYHQGQCCIAASRLFVEESIYDEFVRRSVERAKKY 330

HSP 3 Score: 34.2686 bits (77), Expect = 2.593e-31
Identity = 21/63 (33.33%), Postives = 32/63 (50.79%), Query Frame = 1

Query:  466 GPVVSEGQYEKILKFLSNGKNEGAPFLVXXXXXXXFEKGDFLKKPTLQNV--ELRTTKGKILG 648
            GP + + QYEKIL  + +GK EGA   +         KG F++     +V  ++R  K +I G
Sbjct:  343 GPQIDKEQYEKILDLIESGKKEGAK--LECGGGPWGNKGYFIQPTVFSDVTDDMRIAKEEIFG 403

[Close]

BLAST of DY258182 vs. ExPASy Swiss-Prot
Match: AL1A1_MOUSE (Retinal dehydrogenase 1 OS=Mus musculus GN=Aldh1a1 PE=1 SV=5)

HSP 1 Score: 104.76 bits (260), Expect = 3.368e-31
Identity = 55/100 (55.00%), Postives = 68/100 (68.00%), Query Frame = 2

Query:   11 ILKPSELASVTCLELAEVCREVGLPPGILNIVTGLGPEAGAPLVSHPHVDKIAFTGSNATGIRIMAAAAPM-VKPVSLELGGKSPIIVFEDVDLDKAVEW 307
            ++KP+E   +T L LA + +E G PPG++NIV G GP AGA + SH  VDK+AFTGS   G  I  AA    +K V+LELGGKSP IVF D DLD AVE+
Sbjct:  191 VVKPAEQTPLTALHLASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVDKVAFTGSTQVGKLIKEAAGKSNLKRVTLELGGKSPCIVFADADLDIAVEF 290

HSP 2 Score: 36.1946 bits (82), Expect = 3.368e-31
Identity = 17/37 (45.95%), Postives = 22/37 (59.46%), Query Frame = 3

Query:  318 GCFWTNGQICSATSRLLVHESIAANFLKRMVEGNPKH 428
            G F+  GQ C A SR+ V ES+   F+KR VE   K+
Sbjct:  294 GVFYHQGQCCVAASRIFVEESVYDEFVKRSVERAKKY 330

HSP 3 Score: 33.8834 bits (76), Expect = 3.368e-31
Identity = 21/63 (33.33%), Postives = 32/63 (50.79%), Query Frame = 1

Query:  466 GPVVSEGQYEKILKFLSNGKNEGAPFLVXXXXXXXFEKGDFLKKPTLQNV--ELRTTKGKILG 648
            GP + + Q++KIL  + +GK EGA   +         KG F++     NV  E+R  K +I G
Sbjct:  343 GPQIDKEQHDKILDLIESGKKEGAK--LECGGGRWGNKGFFVQPTVFSNVTDEMRIAKEEIFG 403

[Close]

BLAST of DY258182 vs. ExPASy Swiss-Prot
Match: BETB_PSEMY (Betaine aldehyde dehydrogenase OS=Pseudomonas mendocina (strain ymp) GN=betB PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.699e-31
Identity = 53/101 (52.48%), Postives = 74/101 (73.27%), Query Frame = 2

Query:    5 AAILKPSELASVTCLELAEVCREVGLPPGILNIVTGLGPEAGAPLVSHPHVDKIAFTGSNATGIRIMA-AAAPMVKPVSLELGGKSPIIVFEDVDLDKAVE 304
            A I KPSE+ S+T L+LAE+  E GLP G+ N++TG G E G  L  HP ++K++FTG   TG ++MA A++  +K V++ELGGKSP+IVFED DLD+A +
Sbjct:  172 AMIFKPSEVTSLTALKLAEIYTEAGLPAGVFNVLTGSGREVGQWLTEHPGIEKVSFTGGTVTGKKVMASASSSSLKEVTMELGGKSPLIVFEDADLDRAAD 272

HSP 2 Score: 42.743 bits (99), Expect = 3.699e-31
Identity = 19/58 (32.76%), Postives = 35/58 (60.34%), Query Frame = 1

Query:  376 KALQQIF*KGWLKGIQNIKISDSLEESCKFGPVVSEGQYEKILKFLSNGKNEGAPFLV 549
            + LQ  F    L+ ++ I++ D L+++  FGP+VS    E +L ++  G++EGA  L+
Sbjct:  296 RMLQARFEAKVLERVKRIRLGDPLDDATNFGPLVSYAHMESVLGYIEKGRSEGARLLI 353

[Close]

BLAST of DY258182 vs. ExPASy Swiss-Prot
Match: AL1A7_MOUSE (Aldehyde dehydrogenase, cytosolic 1 OS=Mus musculus GN=Aldh1a7 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.582e-31
Identity = 51/100 (51.00%), Postives = 67/100 (67.00%), Query Frame = 2

Query:   11 ILKPSELASVTCLELAEVCREVGLPPGILNIVTGLGPEAGAPLVSHPHVDKIAFTGSNATGIRIMAAAAPM-VKPVSLELGGKSPIIVFEDVDLDKAVEW 307
            ++KP+E   +T L +A + +E G PPG++NIV G GP AG  + SH  +DK++FTGS   G  I  AA    +K V+LELGGKSP IVF D DLD AVE+
Sbjct:  191 VVKPAEQTPLTALHMASLIKEAGFPPGVVNIVPGYGPTAGGAISSHMDIDKVSFTGSTEVGKLIKEAAGKSNLKRVTLELGGKSPCIVFADADLDSAVEF 290

HSP 2 Score: 37.7354 bits (86), Expect = 9.582e-31
Identity = 19/37 (51.35%), Postives = 23/37 (62.16%), Query Frame = 3

Query:  318 GCFWTNGQICSATSRLLVHESIAANFLKRMVEGNPKH 428
            G F+  GQIC A SRL V ESI   F++R VE   K+
Sbjct:  294 GVFFHQGQICVAASRLFVEESIYDEFVRRSVERAKKY 330

HSP 3 Score: 33.4982 bits (75), Expect = 9.582e-31
Identity = 22/74 (29.73%), Postives = 34/74 (45.95%), Query Frame = 1

Query:  433 ISDSLEESCKFGPVVSEGQYEKILKFLSNGKNEGAPFLVXXXXXXXFEKGDFLKKPTLQNV--ELRTTKGKILG 648
            + + L      GP + + Q+ KIL  + +GK EGA   +         KG F++     NV  E+R  K +I G
Sbjct:  332 LGNPLNSGINQGPQIDKEQHNKILGLIESGKKEGAK--LECGGGRWGNKGFFVQPTVFSNVTDEMRIAKEEIFG 403

[Close]

BLAST of DY258182 vs. ExPASy Swiss-Prot
Match: AL1A1_MACFA (Retinal dehydrogenase 1 OS=Macaca fascicularis GN=ALDH1A1 PE=2 SV=3)

HSP 1 Score: 102.064 bits (253), Expect = 9.582e-31
Identity = 52/100 (52.00%), Postives = 67/100 (67.00%), Query Frame = 2

Query:   11 ILKPSELASVTCLELAEVCREVGLPPGILNIVTGLGPEAGAPLVSHPHVDKIAFTGSNATGIRIMAAAAPM-VKPVSLELGGKSPIIVFEDVDLDKAVEW 307
            ++KP+E   +T L +A + +E G PPG++NIV G GP AGA + SH  +DK+AFTGS   G  I  AA    +K V+LELGGKSP IV  D DLD AVE+
Sbjct:  191 VVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDIDKVAFTGSTEVGKLIKEAAGKSNLKRVTLELGGKSPCIVLADADLDNAVEF 290

HSP 2 Score: 35.8094 bits (81), Expect = 9.582e-31
Identity = 22/63 (34.92%), Postives = 32/63 (50.79%), Query Frame = 1

Query:  466 GPVVSEGQYEKILKFLSNGKNEGAPFLVXXXXXXXFEKGDFLKKPTLQNV--ELRTTKGKILG 648
            GP + + QY+KIL  + +GK EGA   +         KG F++     NV  E+R  K +I G
Sbjct:  343 GPQIDKEQYDKILDLIESGKKEGAK--LECGGGPWGNKGYFVQPTVFSNVTDEMRIAKEEIFG 403

HSP 3 Score: 35.4242 bits (80), Expect = 9.582e-31
Identity = 17/37 (45.95%), Postives = 22/37 (59.46%), Query Frame = 3

Query:  318 GCFWTNGQICSATSRLLVHESIAANFLKRMVEGNPKH 428
            G F+  GQ C A SR+ V ESI   F++R VE   K+
Sbjct:  294 GVFYHQGQCCIAASRIFVEESIYDEFVRRSVERAKKY 330

The following BLAST results are available for this feature:

BLAST of DY258182 vs. ExPASy Swiss-Prot

BLAST of DY258182 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 395


Match Name	E-value	Identity	Description
ALDH_AGABI	5.402e-32	46.73	Aldehyde dehydrogenase OS=Agaricus bisporus GN=ald...	[more]
AL1A1_RABIT	1.184e-31	54.00	Retinal dehydrogenase 1 OS=Oryctolagus cuniculus G...	[more]
BETB_ERWCT	1.286e-31	51.49	Betaine aldehyde dehydrogenase OS=Erwinia carotovo...	[more]
BETB_PECCP	1.675e-31	54.46	Betaine aldehyde dehydrogenase OS=Pectobacterium c...	[more]
AL1A1_SHEEP	2.593e-31	54.00	Retinal dehydrogenase 1 OS=Ovis aries GN=ALDH1A1 P...	[more]
AL1A1_BOVIN	2.593e-31	54.00	Retinal dehydrogenase 1 OS=Bos taurus GN=ALDH1A1 P...	[more]
AL1A1_MOUSE	3.368e-31	55.00	Retinal dehydrogenase 1 OS=Mus musculus GN=Aldh1a1...	[more]
BETB_PSEMY	3.699e-31	52.48	Betaine aldehyde dehydrogenase OS=Pseudomonas mend...	[more]
AL1A7_MOUSE	9.582e-31	51.00	Aldehyde dehydrogenase, cytosolic 1 OS=Mus musculu...	[more]
AL1A1_MACFA	9.582e-31	52.00	Retinal dehydrogenase 1 OS=Macaca fascicularis GN=...	[more]

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Properties


Property Name	Value
Genbank description	KN0AAB3BG07ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DY258182 ID=DY258182; Name=DY258182; organism=Citrus clementina; type=EST; length=713bp
ATGCGCTGCAATATTAAAGCCATCCGAATTGGCATCTGTGACCTGTTTGG
AGCTTGCTGAAGTGTGTAGAGAGGTGGGTCTTCCTCCCGGCATTCTTAAT
ATTGTCACCGGATTGGGTCCTGAAGCTGGGGCTCCTTTGGTATCCCATCC
CCATGTCGACAAGATTGCATTTACTGGAAGCAATGCAACAGGGATCAGGA
TAATGGCTGCTGCAGCTCCGATGGTCAAGCCTGTTTCTTTGGAGCTGGGA
GGAAAAAGTCCAATCATTGTGTTTGAGGATGTTGATCTAGATAAAGCGGT
TGAGTGGACCATCTTTTGGTTGCTTTTGGACAAATGGTCAAATCTGTAGT
GCAACATCTCGCCTTCTTGTGCACGAAAGCATTGCAGCAAATTTTTTAAA
AAGGATGGTTGAAGGGAATCCAAAACATTAAGATTTCCGATTCCCTGGAA
GAAAGTTGCAAATTTGGTCCTGTTGTTAGCGAAGGGCAGTATGAAAAAAT
TTTGAAATTTCTTTCAAATGGCAAAAACGAAGGGGCACCATTTTTGGTGG
GGGGGGGCCCTCCGGGACCTTTTGAAAAAGGGGATTTTTTGAAAAAACCA
ACCCTCCAAAACGTGGAATTACGCACAACTAAAGGGAAAATTTTGGGAAA
AAAAAAAGATTTTTTTGGGGAACCTGTTTTTTTGGGTGGTGTTAGGAGGG
GGTTTTTTTCCCC