DY258182

Overview
NameDY258182
Unique NameDY258182
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258182 vs. ExPASy Swiss-Prot
Match: GABD_SYNY3 (Probable succinate-semialdehyde dehydrogenase [NADP+] OS=Synechocystis sp. (strain PCC 6803) GN=gabD PE=3 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 7.658e-11
Identity = 32/98 (32.65%), Postives = 49/98 (50.00%), Query Frame = 2
Query:   11 ILKPSELASVTCLELAEVCREVGLPPGILNIVTGLGPEAGAPLVSHPHVDKIAFTGSNATGIRIMAAAAPMVKPVSLELGGKSPIIVFEDVDLDKAVE 304
            +LK +       L +AE+ +  G P G    +  +G +  + L++   +     TGS   G    +AAA  +K   LELGG  P IV ED DLD+A++
Sbjct:  152 LLKHASNVPQCALAIAEIFQTAGFPEGAFQTLL-IGGKVASELMADDRIQAGTLTGSEPAGASFASAAAGQIKKTVLELGGSDPFIVLEDADLDQALK 248          

HSP 2 Score: 28.1054 bits (61), Expect = 7.658e-11
Identity = 11/27 (40.74%), Postives = 16/27 (59.26%), Query Frame = 3
Query:  333 NGQICSATSRLLVHESIAANFLKRMVE 413
            NGQ C A  R +V  S+A  F +R+ +
Sbjct:  258 NGQSCIAAKRFIVQASVAEEFFQRLTK 284          
BLAST of DY258182 vs. ExPASy Swiss-Prot
Match: ASTD_PSEMY (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Pseudomonas mendocina (strain ymp) GN=astD PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.621e-11
Identity = 40/98 (40.82%), Postives = 56/98 (57.14%), Query Frame = 2
Query:   11 ILKPSELASVTCLELAEVCREVGLPPGILNIVTGLGPEAGAPLVSHPHVDKIAFTGSNATGIRIMAA-AAPMVKPVSLELGGKSPIIVFEDVDLDKAV 301
            + KPSEL         +   E GLP G+LN++ G G E G  L  HP +D + FTGS+ TG  + A  A    K ++LE+GG +P+IV +  D+D AV
Sbjct:  167 LFKPSELTPKVAELTVKCWIEAGLPAGVLNLLQG-GRETGVALAGHPGIDGLFFTGSSRTGNLLHAQFAGRPDKILALEMGGNNPLIVDQVADIDAAV 263          
BLAST of DY258182 vs. ExPASy Swiss-Prot
Match: ASTD_ERWT9 (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=astD PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.621e-11
Identity = 41/102 (40.20%), Postives = 57/102 (55.88%), Query Frame = 2
Query:   11 ILKPSELASVTCLELAEVCREVGLPPGILNIVTGLGPEAGAPLVSHPHVDKIAFTGSNATGIRI-MAAAAPMVKPVSLELGGKSPIIVFEDVDLDKAVEWTI 313
            + KPSEL  +T      +    GLP G+L+++ G G E G  LV  P VD I FTGS ATG ++    A    K ++LE+GG + +IV +  D+D AV   I
Sbjct:  162 LFKPSELTPLTAEIAMRLWNHAGLPQGVLHLLQG-GRETGQALVQQPQVDGILFTGSAATGYQLHRQLAGQPEKMLALEMGGNNALIVEDPDDIDAAVHIAI 262          
BLAST of DY258182 vs. ExPASy Swiss-Prot
Match: ASTD_ECOSM (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=astD PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.621e-11
Identity = 40/102 (39.22%), Postives = 60/102 (58.82%), Query Frame = 2
Query:   11 ILKPSELASVTCLELAEVCREVGLPPGILNIVTGLGPEAGAPLVSHPHVDKIAFTGSNATGIRI-MAAAAPMVKPVSLELGGKSPIIVFEDVDLDKAVEWTI 313
            I KPSEL   +   +  + ++ GLPPG+LN+V G G E G  L +   +D + FTGS  TG ++    +    K ++LE+GG +P+I+ E  D+D AV  TI
Sbjct:  166 IFKPSELTPWSGEAVMRLWQQAGLPPGVLNLVQG-GRETGQALSALEDLDGLLFTGSANTGYQLHRQLSGQPEKILALEMGGNNPLIIDEAADIDAAVHLTI 266          
BLAST of DY258182 vs. ExPASy Swiss-Prot
Match: ASTD_ECO7I (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=astD PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.621e-11
Identity = 40/102 (39.22%), Postives = 60/102 (58.82%), Query Frame = 2
Query:   11 ILKPSELASVTCLELAEVCREVGLPPGILNIVTGLGPEAGAPLVSHPHVDKIAFTGSNATGIRI-MAAAAPMVKPVSLELGGKSPIIVFEDVDLDKAVEWTI 313
            I KPSEL   +   +  + ++ GLPPG+LN+V G G E G  L +   +D + FTGS  TG ++    +    K ++LE+GG +P+I+ E  D+D AV  TI
Sbjct:  166 IFKPSELTPWSGEAVMRLWQQAGLPPGVLNLVQG-GRETGQALSALEDLDGLLFTGSANTGYQLHRQLSGQPEKILALEMGGNNPLIIDEAADIDAAVHLTI 266          
The following BLAST results are available for this feature:
BLAST of DY258182 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 395
Match NameE-valueIdentityDescription
GABD_SYNY37.658e-1132.65Probable succinate-semialdehyde dehydrogenase [NAD... [more]
ASTD_PSEMY8.621e-1140.82N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_ERWT98.621e-1140.20N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_ECOSM8.621e-1139.22N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_ECO7I8.621e-1139.22N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3BG07ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258182 ID=DY258182; Name=DY258182; organism=Citrus clementina; type=EST; length=713bp
ATGCGCTGCAATATTAAAGCCATCCGAATTGGCATCTGTGACCTGTTTGG
AGCTTGCTGAAGTGTGTAGAGAGGTGGGTCTTCCTCCCGGCATTCTTAAT
ATTGTCACCGGATTGGGTCCTGAAGCTGGGGCTCCTTTGGTATCCCATCC
CCATGTCGACAAGATTGCATTTACTGGAAGCAATGCAACAGGGATCAGGA
TAATGGCTGCTGCAGCTCCGATGGTCAAGCCTGTTTCTTTGGAGCTGGGA
GGAAAAAGTCCAATCATTGTGTTTGAGGATGTTGATCTAGATAAAGCGGT
TGAGTGGACCATCTTTTGGTTGCTTTTGGACAAATGGTCAAATCTGTAGT
GCAACATCTCGCCTTCTTGTGCACGAAAGCATTGCAGCAAATTTTTTAAA
AAGGATGGTTGAAGGGAATCCAAAACATTAAGATTTCCGATTCCCTGGAA
GAAAGTTGCAAATTTGGTCCTGTTGTTAGCGAAGGGCAGTATGAAAAAAT
TTTGAAATTTCTTTCAAATGGCAAAAACGAAGGGGCACCATTTTTGGTGG
GGGGGGGCCCTCCGGGACCTTTTGAAAAAGGGGATTTTTTGAAAAAACCA
ACCCTCCAAAACGTGGAATTACGCACAACTAAAGGGAAAATTTTGGGAAA
AAAAAAAGATTTTTTTGGGGAACCTGTTTTTTTGGGTGGTGTTAGGAGGG
GGTTTTTTTCCCC
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