DY258189

Overview
NameDY258189
Unique NameDY258189
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length982
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig55 contig Ccv1_Contig55:19..1004. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258189 vs. ExPASy Swiss-Prot
Match: RTNLJ_ARATH (Reticulon-like protein B10 OS=Arabidopsis thaliana GN=RTNLB10 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.816e-19
Identity = 50/185 (27.03%), Postives = 86/185 (46.49%), Query Frame = 2
Query:  212 QKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXIGSCCNFLTVLYIGFVAAHTLPVLYEKHEDEVDSXXXXXXXXXXXXYKKLDSGFL 766
            ++ VH  +  G  AD+++W+N++    +L   T +W LFE   Y F   V    +L ++  F W   + LFNR   ++P   +  E    +   +   +N  L + ++I  G   KQ             +G+  NFLT+LY+G V +  +P LYE+++D +D             Y+K+D   L
Sbjct:    2 EESVHQSIRFGSVADLIMWKNRRGGFLLLGSTTLLWFLFEKCGYSFFPFVVNTQLLSVVILFLWAKSAILFNRPMPQLPNLEITEEFVFMVADAIRVWINTVLAVAREIYVGRNAKQLFRVSVVLWTVSFVGNFLNFLTILYLGVVLSLLIPFLYERYQDLIDEKLSLTHRVIQTQYRKIDERLL 186          
BLAST of DY258189 vs. ExPASy Swiss-Prot
Match: RTNLK_ARATH (Reticulon-like protein B11 OS=Arabidopsis thaliana GN=RTNLB11 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.603e-17
Identity = 48/160 (30.00%), Postives = 78/160 (48.75%), Query Frame = 2
Query:  221 VHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXIGSCCNFLTVLYIGFVAAHTLPVLYEKHEDEVD 700
            VH  LG G  AD+LLWRN+  +  +L+ +T  W LFE   Y+ L+ V   L+L +   F W   + + NR    VP   +P E        +   +N  L +  DI+      +             +G+  N LT++YIG + + + P++YEK++D +D
Sbjct:   13 VHQSLGAGSVADLLLWRNRTGAVILLISSTGFWFLFERAGYNLLSFVSNVLLLLVAIFFLWAKSATVLNRPLPPVPNMEIPEEFANKAADDLRVWINYVLSIASDITIARNPIRLLQVSLVLWAISYVGTLINSLTLVYIGVLLSLSFPIVYEKYQDHID 172          
BLAST of DY258189 vs. ExPASy Swiss-Prot
Match: RTNLL_ARATH (Reticulon-like protein B12 OS=Arabidopsis thaliana GN=RTNLB12 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.735e-17
Identity = 46/168 (27.38%), Postives = 80/168 (47.62%), Query Frame = 2
Query:  194 NRLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXIGSCCNFLTVLYIGFVAAHTLPVLYEKHEDEV 697
            ++LF R + +H +LGGG  ADV+LWR K +S  ++    A W++FE   Y   T++   L+L +   F W   + + NR    +P F +   +       +  +VN+ L +  DI+     +              IGS  +F T+ +   +   T+P  YE++ED +
Sbjct:    6 DKLFNRDRTIHEILGGGIVADVMLWRKKNVSVGIVTVTIASWMVFEAFAYTIFTLISSVLLLLLSILFLWSKSASILNRPSPPLPEFQISEAMAEEASIWLRIHVNKLLQVSHDIAMARDSELYTKVAVSLFLLSLIGSLMDFQTLCHTSVLVVMTVPAFYERYEDYI 173          
BLAST of DY258189 vs. ExPASy Swiss-Prot
Match: RTNLN_ARATH (Reticulon-like protein B14 OS=Arabidopsis thaliana GN=RTNLB14 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 2.315e-16
Identity = 51/165 (30.91%), Postives = 84/165 (50.91%), Query Frame = 2
Query:  209 RQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFW--VNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXIGSCCNFLTVLYIGFVAAHTLPVLYEKHEDEV 697
            R++ ++H LGGG+ AD++ W+NKK S ++L   T IW LFE + Y F+T +C  L+L +     W  +  S L    P  +        +  +    +   +N  +  L DIS G   +              +G+  + LT+LYI FV   T+P+LYE++E+E+
Sbjct:   18 RRRSLYHNLGGGRFADIMFWKNKKESGTILGVFTLIWFLFEVVEYPFITFLCQILLLFIFIFLIWSYIGSSQLIQSKPPSINDL----RISESNWRFLFNKINWFIIKLYDISSGKDFRLLFLAVVSLWILSVVGNYFSSLTLLYIVFVGLETIPMLYEQYEEEL 178          
BLAST of DY258189 vs. ExPASy Swiss-Prot
Match: RTNLO_ARATH (Reticulon-like protein B15 OS=Arabidopsis thaliana GN=RTNLB15 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.717e-11
Identity = 46/161 (28.57%), Postives = 76/161 (47.20%), Query Frame = 2
Query:  221 VHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXIGSCCNFLTVLYIGFVAAHTLPVLYEKHEDEVDS 703
            V  +LG G  AD+ LW++K  S   L+ AT  W L E++    + ++C  L+L ML  F W     +F       P  +  P+   +    + + +   L +L +I+ G   K              IGS  + LT+LYI  V + T+PV+Y + ++ +DS
Sbjct:    4 VDQILGDGAVADLCLWKDKINSGITLVMATLFWFLLEFMEARLVPLLCSILLLLMLILFLWAKFGEVFFTRRPPTPEELNQPD---SPLKALFSMMEGHLLMLYEIAYGKDNKTFLKTILYVAIIYNIGSYISLLTILYICLVCSMTIPVVYMQFQELIDS 161          
The following BLAST results are available for this feature:
BLAST of DY258189 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RTNLJ_ARATH3.816e-1927.03Reticulon-like protein B10 OS=Arabidopsis thaliana... [more]
RTNLK_ARATH1.603e-1730.00Reticulon-like protein B11 OS=Arabidopsis thaliana... [more]
RTNLL_ARATH2.735e-1727.38Reticulon-like protein B12 OS=Arabidopsis thaliana... [more]
RTNLN_ARATH2.315e-1630.91Reticulon-like protein B14 OS=Arabidopsis thaliana... [more]
RTNLO_ARATH1.717e-1128.57Reticulon-like protein B15 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3BH09ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258189 ID=DY258189; Name=DY258189; organism=Citrus clementina; type=EST; length=982bp
GACAACTCCAATCATCTACTCAACAGACCCCATTTTTTTCCTTTTTTCTT
GAAAGATTGGAAGAATGCCAGAGAAAATAACAGCAGAGAACATTTTGGAC
AACCTTGTGGAAACCATTCCAGATAAGGTTCAAAAGCAGAAAGCTGTATC
ATTTTTTGAGGAAGAGACATCAAGCTCAGTCACTGCTCGTTTCAATCGGC
TGTTCGGACGCCAGAAACCTGTCCACCATCTTTTGGGCGGTGGAAAATCT
GCTGATGTTTTGTTATGGAGGAACAAGAAGATATCAGCCAGTGTATTAAT
GGGTGCAACAGCAATTTGGGTGCTCTTTGAATGGCTTAACTACCATTTTC
TGACCATTGTATGCTTTGCTTTGGTCCTTGGCATGCTTGCTCAATTTTTT
TGGGTAAACATTTCGGGCTTATTTAACAGATCACCATCGAAAGTTCCCCG
CTTTGTTCTGCCTCCAGAGGTATTTGCTAACATTGGCACGACAGTTTGTG
CTAATGTTAACGAAGCTCTGGGGCTACTTCAGGACATTTCATGTGGAGGA
AAACTGAAACAACTTCTTGTGGCTGTAGCAAGCTTGTGGGCTGCTGCTGT
GATAGGGAGCTGTTGTAACTTTTTGACCGTTCTATATATTGGTTTTGTTG
CTGCCCATACATTGCCAGTCCTGTATGAGAAGCATGAAGATGAAGTTGAC
AGCTTTCTGAACAATGTCTTCCAGCAGCTCCAGAATCAGTACAAGAAGCT
TGATTCAGGTTTCCTCAGCAAAATCCCCAAGGGCAAGTTCAAAGGGAAGA
AAAGCGAATAGATCGATTGATCAAACATTAGATTTTACATTTCCCCCTTG
CCATGACTAGTGATGGAACGTAACGACNACATTGTCATATTATTAATGTT
TATTATGGTGGAANTTATGTATTATTATAGATATTGACCTGGNTGATTTA
TAAGAGTCCAAATAACTACTAATCCCTTTTTC
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