DY258207

Overview
NameDY258207
Unique NameDY258207
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1033
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258207 vs. ExPASy Swiss-Prot
Match: RAB1B_HUMAN (Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1B PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 4.636e-31
Identity = 70/165 (42.42%), Postives = 101/165 (61.21%), Query Frame = 3
Query:  270 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF----EEIAKRL 752
            KL+L+GDSGVGKSC++LRF    +  +   T+G  F  +TI L D  T+K +IWDTAGQER+  +   YYRG       YD+T  +S+   + W++E+ ++ S ++   LVGNK+DL  K+ V      E+A+  G+ F+ETSAK A N+ Q F     EI KR+
Sbjct:   10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRM 173          
BLAST of DY258207 vs. ExPASy Swiss-Prot
Match: RAB1B_BOVIN (Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 4.636e-31
Identity = 70/165 (42.42%), Postives = 101/165 (61.21%), Query Frame = 3
Query:  270 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF----EEIAKRL 752
            KL+L+GDSGVGKSC++LRF    +  +   T+G  F  +TI L D  T+K +IWDTAGQER+  +   YYRG       YD+T  +S+   + W++E+ ++ S ++   LVGNK+DL  K+ V      E+A+  G+ F+ETSAK A N+ Q F     EI KR+
Sbjct:   10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRM 173          
BLAST of DY258207 vs. ExPASy Swiss-Prot
Match: RAB8A_BOVIN (Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 6.055e-31
Identity = 65/159 (40.88%), Postives = 99/159 (62.26%), Query Frame = 3
Query:  270 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAK 746
            KL+L+GDSGVGK+C++ RF    F+ T   T+G  F  +TI L D   +K +IWDTAGQER+  +   YYRG       YDIT+  SF+  + W++ +++H S D+   ++GNK D+++KR+V  + G + A   G+ F+ETSAK   N+   F  +A+
Sbjct:   10 KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFYTLAR 167          
BLAST of DY258207 vs. ExPASy Swiss-Prot
Match: RAB26_BOVIN (Ras-related protein Rab-26 OS=Bos taurus GN=RAB26 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 6.055e-31
Identity = 70/172 (40.70%), Postives = 107/172 (62.21%), Query Frame = 3
Query:  240 GSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKV-TVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 752
            G  D  ++  K++L+GDSGVGK+C+++RF  G F   + + TVG  F ++ + + D   VK +IWDTAGQER+ ++   YYR        YD+T+  SF+  Q W+ E+Q+H   D+V+ L+GNK D  ++R V  +D  + A+  G+ F+ETSAKT  N++  F  IAK L
Sbjct:   55 GGGDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVVDV-DGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDSIQAWLTEIQEHAQDDVVLMLLGNKVDSAQERAVKREDAEKLAKDYGLPFMETSAKTGLNVDLAFTAIAKEL 225          
BLAST of DY258207 vs. ExPASy Swiss-Prot
Match: RAB1B_RAT (Ras-related protein Rab-1B OS=Rattus norvegicus GN=Rab1b PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 6.055e-31
Identity = 70/165 (42.42%), Postives = 101/165 (61.21%), Query Frame = 3
Query:  270 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF----EEIAKRL 752
            KL+L+GDSGVGKSC++LRF    +  +   T+G  F  +TI L D  T+K +IWDTAGQER+  +   YYRG       YD+T  +S+   + W++E+ ++ S ++   LVGNK+DL  K+ V      E+A+  G+ F+ETSAK A N+ Q F     EI KR+
Sbjct:   10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTVTSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGVPFLETSAKNATNVEQAFMTMAAEIKKRM 173          
BLAST of DY258207 vs. ExPASy Swiss-Prot
Match: RAB1B_MACFA (Ras-related protein Rab-1B OS=Macaca fascicularis GN=RAB1B PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 6.055e-31
Identity = 70/165 (42.42%), Postives = 101/165 (61.21%), Query Frame = 3
Query:  270 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF----EEIAKRL 752
            KL+L+GDSGVGKSC++LRF    +  +   T+G  F  +TI L D  T+K +IWDTAGQER+  +   YYRG       YD+T  +S+   + W++E+ ++ S ++   LVGNK+DL  K+ V      E+A+  G+ F+ETSAK A N+ Q F     EI KR+
Sbjct:   10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDRESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRM 173          
BLAST of DY258207 vs. ExPASy Swiss-Prot
Match: YPTC1_CHLRE (GTP-binding protein YPTC1 OS=Chlamydomonas reinhardtii GN=YPTC1 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 7.908e-31
Identity = 66/161 (40.99%), Postives = 98/161 (60.87%), Query Frame = 3
Query:  270 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 752
            KL+L+GDSGVGKSC++LRF    +  +   T+G  F  +T+ L D   +K +IWDTAGQER+  +   YYRG       YD+T  +SFN  + W+ E+ ++ S ++   LVGNK+DL  K+ V       +A++ G+ F+ETSAK A N+ Q F  +A  +
Sbjct:   10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVEL-DGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKSDLTSKKVVEYSVAKAFADEIGIPFLETSAKNATNVEQAFMTMAAEI 169          
BLAST of DY258207 vs. ExPASy Swiss-Prot
Match: RAB8A_RAT (Ras-related protein Rab-8A OS=Rattus norvegicus GN=Rab8a PE=2 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 7.908e-31
Identity = 65/159 (40.88%), Postives = 99/159 (62.26%), Query Frame = 3
Query:  270 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAK 746
            KL+L+GDSGVGK+C++ RF    F+ T   T+G  F  +TI L D   +K +IWDTAGQER+  +   YYRG       YDIT+  SF+  + W++ +++H S D+   ++GNK D+++KR+V  + G + A   G+ F+ETSAK   N+   F  +A+
Sbjct:   10 KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLAR 167          
BLAST of DY258207 vs. ExPASy Swiss-Prot
Match: RAB8A_MOUSE (Ras-related protein Rab-8A OS=Mus musculus GN=Rab8a PE=1 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 7.908e-31
Identity = 65/159 (40.88%), Postives = 99/159 (62.26%), Query Frame = 3
Query:  270 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAK 746
            KL+L+GDSGVGK+C++ RF    F+ T   T+G  F  +TI L D   +K +IWDTAGQER+  +   YYRG       YDIT+  SF+  + W++ +++H S D+   ++GNK D+++KR+V  + G + A   G+ F+ETSAK   N+   F  +A+
Sbjct:   10 KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLAR 167          
BLAST of DY258207 vs. ExPASy Swiss-Prot
Match: RAB8A_MACFA (Ras-related protein Rab-8A OS=Macaca fascicularis GN=RAB8A PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 7.908e-31
Identity = 65/159 (40.88%), Postives = 99/159 (62.26%), Query Frame = 3
Query:  270 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAK 746
            KL+L+GDSGVGK+C++ RF    F+ T   T+G  F  +TI L D   +K +IWDTAGQER+  +   YYRG       YDIT+  SF+  + W++ +++H S D+   ++GNK D+++KR+V  + G + A   G+ F+ETSAK   N+   F  +A+
Sbjct:   10 KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLAR 167          
The following BLAST results are available for this feature:
BLAST of DY258207 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB1B_HUMAN4.636e-3142.42Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1... [more]
RAB1B_BOVIN4.636e-3142.42Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B ... [more]
RAB8A_BOVIN6.055e-3140.88Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A ... [more]
RAB26_BOVIN6.055e-3140.70Ras-related protein Rab-26 OS=Bos taurus GN=RAB26 ... [more]
RAB1B_RAT6.055e-3142.42Ras-related protein Rab-1B OS=Rattus norvegicus GN... [more]
RAB1B_MACFA6.055e-3142.42Ras-related protein Rab-1B OS=Macaca fascicularis ... [more]
YPTC1_CHLRE7.908e-3140.99GTP-binding protein YPTC1 OS=Chlamydomonas reinhar... [more]
RAB8A_RAT7.908e-3140.88Ras-related protein Rab-8A OS=Rattus norvegicus GN... [more]
RAB8A_MOUSE7.908e-3140.88Ras-related protein Rab-8A OS=Mus musculus GN=Rab8... [more]
RAB8A_MACFA7.908e-3140.88Ras-related protein Rab-8A OS=Macaca fascicularis ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3CD04ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258207 ID=DY258207; Name=DY258207; organism=Citrus clementina; type=EST; length=1033bp
GCGGGGGAGTTTCGGCCATTAACGACCAACATCCGAAGCACTGCAGCAAA
TCAGCAATCAATCTGCTCATCGCAAAATCACTCCACTACTAATACCCTAA
TTACACATATACGTGCATACGCATACTTATATACATACTCGTTTATATAT
TTATTCTTACAGGTCGAATGGGTTGCTCAGGTTCTGTTCCAGCTAGGAGT
TCTGGCCAGTCCGGTGGACTTAACAACTTGGAAAATGCAGGGTCATCTGA
TGCAAAAAACCTACGTGTTAAGCTGGTTCTGTTAGGTGATTCAGGTGTTG
GGAAAAGTTGTATTGTTCTTCGCTTTGTTCGTGGCCAGTTTGACCCTACC
TCCAAGGTAACTGTTGGAGCCTCATTCTTGTCACAGACGATAGCTTTGCA
AGATTCTACAACAGTTAAGTTTGAAATATGGGATACAGCTGGTCAAGAAA
GATATGCTGCTCTGGCACCACTATATTACAGAGGTGCTGCAGTCGCAGTT
GTTGTGTATGATATAACTAGTCCAGATTCATTCAACAAAGCGCAATACTG
GGTTAAGGAGCTACAAAAACATGGAAGTCCTGACATAGTCATGGCTTTAG
TTGGTAACAAGGCTGATCTTCATGAGAAGCGAGAAGTACCAGCTCAAGAT
GGCATTGAGTATGCGGAGAAGAATGGGATGTTCTTTATCGAAACATCGGC
CAAGACTGCAGATAATATAAATCAGCTGTTTGAGGAAATTGCTAAGCGAC
TTCCCCGCCCATCACCTTCTTCATGATTGTGGATTCTGAAATCTGAACTG
CTGTGTCTGCTGATGTAACGCCGAATCCTGTCAGTTTGTCATATCAAAGA
CTTGTGTATATTGTGATATATGATGTGGGTCCCCTGTTTCATTTTGCAAC
TGCATTATGATTTATGATTCTCACTTGGGAAACTTTCTGTGGCAAACTTA
AATCCTAAGGGGGGATATAAACCATTTAAACGCCGCAATGGAGGCACCAA
GAATTTGAATTAAAATATTTAACCCTTTTACCC
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