DY258207

Overview
NameDY258207
Unique NameDY258207
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1033
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258207 vs. ExPASy Swiss-Prot
Match: RAB8A_HUMAN (Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8A PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 7.908e-31
Identity = 65/159 (40.88%), Postives = 99/159 (62.26%), Query Frame = 3
Query:  270 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAK 746
            KL+L+GDSGVGK+C++ RF    F+ T   T+G  F  +TI L D   +K +IWDTAGQER+  +   YYRG       YDIT+  SF+  + W++ +++H S D+   ++GNK D+++KR+V  + G + A   G+ F+ETSAK   N+   F  +A+
Sbjct:   10 KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLAR 167          
BLAST of DY258207 vs. ExPASy Swiss-Prot
Match: RAB8A_CANFA (Ras-related protein Rab-8A OS=Canis familiaris GN=RAB8A PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 7.908e-31
Identity = 65/159 (40.88%), Postives = 99/159 (62.26%), Query Frame = 3
Query:  270 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAK 746
            KL+L+GDSGVGK+C++ RF    F+ T   T+G  F  +TI L D   +K +IWDTAGQER+  +   YYRG       YDIT+  SF+  + W++ +++H S D+   ++GNK D+++KR+V  + G + A   G+ F+ETSAK   N+   F  +A+
Sbjct:   10 KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLAR 167          
BLAST of DY258207 vs. ExPASy Swiss-Prot
Match: RAB19_MOUSE (Ras-related protein Rab-19 OS=Mus musculus GN=Rab19 PE=2 SV=3)

HSP 1 Score: 134.806 bits (338), Expect = 7.908e-31
Identity = 64/162 (39.51%), Postives = 103/162 (63.58%), Query Frame = 3
Query:  270 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMF-FIETSAKTADNINQLFEEIAKRL 752
            K++L+GDS VGK+C+V  F  G +  + + T+G  F  +++ + D   VK ++WDTAGQER+  +   YYR        YD+T   +F    +W+ E++K+G+ ++V+ L+GNK+DL EKR V  +D    AEK+G+   +ETSAK + NI+++F  +AK L
Sbjct:   19 KVILIGDSNVGKTCVVQHFKSGVYSESQQNTIGVDFTVRSLEI-DGKKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNKSDLWEKRHVLFEDACTLAEKHGLLAVLETSAKESRNIDEVFVLMAKEL 179          
BLAST of DY258207 vs. ExPASy Swiss-Prot
Match: RAB8A_PONAB (Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8A PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.033e-30
Identity = 65/159 (40.88%), Postives = 99/159 (62.26%), Query Frame = 3
Query:  270 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAK 746
            KL+L+GDSGVGK+C++ RF    F+ T   T+G  F  +TI L D   +K +IWDTAGQER+  +   YYRG       YDIT+  SF+  + W++ +++H S D+   ++GNK D+++KR+V  + G + A   G+ F+ETSAK   N+   F  +A+
Sbjct:   10 KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKRDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLAR 167          
BLAST of DY258207 vs. ExPASy Swiss-Prot
Match: RAB19_XENTR (Ras-related protein Rab-19 OS=Xenopus tropicalis GN=rab19 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.033e-30
Identity = 69/180 (38.33%), Postives = 110/180 (61.11%), Query Frame = 3
Query:  216 GLNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMF-FIETSAKTADNINQLFEEIAKRL 752
            G N+LE+    D  +   K++L+GDS VGK+C+V RF  G F    + T+G  F  + + + +   VK ++WDTAGQER+  +   YYR        YDIT   SF    +W+ E +K+G+ +++M L+GNK+DL EKR++  ++    AEK+G+   +ETSAK + N++++F  +AK L
Sbjct:    3 GSNSLED----DPFDFLFKIILIGDSNVGKTCVVHRFQSGVFAHNQQNTIGVDFTVRNMNI-NGKKVKVQVWDTAGQERFRTITQSYYRSAHGAIIAYDITRRQSFESVPHWIYEAEKYGAANLMMMLIGNKSDLAEKRQILFEEACTLAEKHGLLAVLETSAKESHNVDEVFLLMAKEL 177          
BLAST of DY258207 vs. ExPASy Swiss-Prot
Match: RAB19_HUMAN (Ras-related protein Rab-19 OS=Homo sapiens GN=RAB19 PE=2 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 1.033e-30
Identity = 65/162 (40.12%), Postives = 100/162 (61.73%), Query Frame = 3
Query:  270 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMF-FIETSAKTADNINQLFEEIAKRL 752
            K++L+GDS VGK+C+V  F  G +  T + T+G  F  +++ + D   VK ++WDTAGQER+  +   YYR        YD+T   +F    +W+ E++K+G+ ++V+ L+GNK DL EKR V  +D    AEK G+   +ETSAK + NI ++F  +AK L
Sbjct:   19 KIILIGDSNVGKTCVVQHFKSGVYTETQQNTIGVDFTVRSLDI-DGKKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESIPHWIHEIEKYGAANVVIMLIGNKCDLWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIEEVFVLMAKEL 179          
BLAST of DY258207 vs. ExPASy Swiss-Prot
Match: RAB19_RAT (Ras-related protein Rab-19 OS=Rattus norvegicus GN=Rab19 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.762e-30
Identity = 64/162 (39.51%), Postives = 102/162 (62.96%), Query Frame = 3
Query:  270 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMF-FIETSAKTADNINQLFEEIAKRL 752
            K++L+GDS VGK+C+V  F  G +  + + T+G  F  +++ + D   VK ++WDTAGQER+  +   YYR        YD+T   +F    +W+ E++K+G+ ++V+ L+GNK+DL EKR V  +D    AEK G+   +ETSAK + NI+++F  +AK L
Sbjct:   19 KVILIGDSNVGKTCVVQHFKSGVYSESQQNTIGVDFTVRSLEI-DGKKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNKSDLWEKRHVLFEDACTLAEKYGLLAVLETSAKESRNIDEVFVLMAKEL 179          
BLAST of DY258207 vs. ExPASy Swiss-Prot
Match: RAB1D_DICDI (Ras-related protein Rab-1D OS=Dictyostelium discoideum GN=rab1D PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 2.301e-30
Identity = 66/159 (41.51%), Postives = 95/159 (59.75%), Query Frame = 3
Query:  270 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAK 746
            K++L+GDSGVGKSC++LRF    +  T   T+G  F  +T+ L D  T+K +IWDTAGQER+  +   YYRG       YD T  DSF   + W+ E+ ++   ++   LVGNK DL  ++ V +     +AE  G+ FIETSAK A N+ + F  +A+
Sbjct:   12 KILLIGDSGVGKSCLLLRFADDSWTDTHISTIGVDFKIKTLNL-DGKTIKLQIWDTAGQERFRTITSSYYRGAQGIILVYDCTDQDSFTNVKQWMGEIDRYACENVNKLLVGNKTDLVNEKVVDSNQAKSFAESYGIPFIETSAKNATNVEECFISMAR 169          
BLAST of DY258207 vs. ExPASy Swiss-Prot
Match: RAB1B_PIG (Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 2.301e-30
Identity = 70/165 (42.42%), Postives = 100/165 (60.61%), Query Frame = 3
Query:  270 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF----EEIAKRL 752
            KL+L+GDSGVGKSC++LRF    +  +   T+G  F  +TI L D  T+K +IWDTAGQER   +   YYRG       YD+T  +S+   + W++E+ ++ S ++   LVGNK+DL  K+ V      E+A+  G+ F+ETSAK A N+ Q F     EI KR+
Sbjct:   10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERGRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRM 173          
BLAST of DY258207 vs. ExPASy Swiss-Prot
Match: RAB13_HUMAN (Ras-related protein Rab-13 OS=Homo sapiens GN=RAB13 PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 2.301e-30
Identity = 61/159 (38.36%), Postives = 99/159 (62.26%), Query Frame = 3
Query:  270 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAK 746
            KL+L+GDSGVGK+C+++RF    F+ T   T+G  F  +T+ ++    +K ++WDTAGQER+  +   YYRG       YDIT   SF   Q W+K ++++ S  +   L+GNK D+  KR+V  +   + A ++G+ F ETSAK++ N+++ F  +A+
Sbjct:   10 KLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKK-IKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLAR 167          
The following BLAST results are available for this feature:
BLAST of DY258207 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB8A_HUMAN7.908e-3140.88Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8... [more]
RAB8A_CANFA7.908e-3140.88Ras-related protein Rab-8A OS=Canis familiaris GN=... [more]
RAB19_MOUSE7.908e-3139.51Ras-related protein Rab-19 OS=Mus musculus GN=Rab1... [more]
RAB8A_PONAB1.033e-3040.88Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8... [more]
RAB19_XENTR1.033e-3038.33Ras-related protein Rab-19 OS=Xenopus tropicalis G... [more]
RAB19_HUMAN1.033e-3040.12Ras-related protein Rab-19 OS=Homo sapiens GN=RAB1... [more]
RAB19_RAT1.762e-3039.51Ras-related protein Rab-19 OS=Rattus norvegicus GN... [more]
RAB1D_DICDI2.301e-3041.51Ras-related protein Rab-1D OS=Dictyostelium discoi... [more]
RAB1B_PIG2.301e-3042.42Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B ... [more]
RAB13_HUMAN2.301e-3038.36Ras-related protein Rab-13 OS=Homo sapiens GN=RAB1... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3CD04ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258207 ID=DY258207; Name=DY258207; organism=Citrus clementina; type=EST; length=1033bp
GCGGGGGAGTTTCGGCCATTAACGACCAACATCCGAAGCACTGCAGCAAA
TCAGCAATCAATCTGCTCATCGCAAAATCACTCCACTACTAATACCCTAA
TTACACATATACGTGCATACGCATACTTATATACATACTCGTTTATATAT
TTATTCTTACAGGTCGAATGGGTTGCTCAGGTTCTGTTCCAGCTAGGAGT
TCTGGCCAGTCCGGTGGACTTAACAACTTGGAAAATGCAGGGTCATCTGA
TGCAAAAAACCTACGTGTTAAGCTGGTTCTGTTAGGTGATTCAGGTGTTG
GGAAAAGTTGTATTGTTCTTCGCTTTGTTCGTGGCCAGTTTGACCCTACC
TCCAAGGTAACTGTTGGAGCCTCATTCTTGTCACAGACGATAGCTTTGCA
AGATTCTACAACAGTTAAGTTTGAAATATGGGATACAGCTGGTCAAGAAA
GATATGCTGCTCTGGCACCACTATATTACAGAGGTGCTGCAGTCGCAGTT
GTTGTGTATGATATAACTAGTCCAGATTCATTCAACAAAGCGCAATACTG
GGTTAAGGAGCTACAAAAACATGGAAGTCCTGACATAGTCATGGCTTTAG
TTGGTAACAAGGCTGATCTTCATGAGAAGCGAGAAGTACCAGCTCAAGAT
GGCATTGAGTATGCGGAGAAGAATGGGATGTTCTTTATCGAAACATCGGC
CAAGACTGCAGATAATATAAATCAGCTGTTTGAGGAAATTGCTAAGCGAC
TTCCCCGCCCATCACCTTCTTCATGATTGTGGATTCTGAAATCTGAACTG
CTGTGTCTGCTGATGTAACGCCGAATCCTGTCAGTTTGTCATATCAAAGA
CTTGTGTATATTGTGATATATGATGTGGGTCCCCTGTTTCATTTTGCAAC
TGCATTATGATTTATGATTCTCACTTGGGAAACTTTCTGTGGCAAACTTA
AATCCTAAGGGGGGATATAAACCATTTAAACGCCGCAATGGAGGCACCAA
GAATTTGAATTAAAATATTTAACCCTTTTACCC
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