DY258233

Overview
NameDY258233
Unique NameDY258233
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length974
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258233_ssr734 microsatellite DY258233_ssr734:734..748. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1059 contig Ccv1_Contig1059:1..979. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258233 vs. ExPASy Swiss-Prot
Match: EF103_ARATH (Ethylene-responsive transcription factor 6 OS=Arabidopsis thaliana GN=ERF6 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 4.303e-15
Identity = 38/64 (59.38%), Postives = 45/64 (70.31%), Query Frame = 3
Query:  330 KEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXXFSMRGSSAILNFPVE 521
            +++ YRGVR RPWGKFAAEIRD TR G RVWLGTF++            F +RGS AILNFP+E
Sbjct:  133 EKRHYRGVRMRPWGKFAAEIRDPTRRGTRVWLGTFETAIEAARAYDKEAFRLRGSKAILNFPLE 196          
BLAST of DY258233 vs. ExPASy Swiss-Prot
Match: ERF98_ARATH (Ethylene-responsive transcription factor ERF098 OS=Arabidopsis thaliana GN=ERF098 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 9.587e-15
Identity = 38/73 (52.05%), Postives = 48/73 (65.75%), Query Frame = 3
Query:  303 SSTTEENPTKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXXFSMRGSSAILNFPVE 521
            SS  +    K+  +RGVRRRPWGKFAAEIRD +R+G R+WLGTF++            F++RG  AILNFP E
Sbjct:    7 SSNNQSQDDKQARFRGVRRRPWGKFAAEIRDPSRNGARLWLGTFETAEEAARAYDRAAFNLRGHLAILNFPNE 79          
BLAST of DY258233 vs. ExPASy Swiss-Prot
Match: EF106_ARATH (Ethylene-responsive transcription factor ERF106 OS=Arabidopsis thaliana GN=ERF106 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.643e-14
Identity = 42/93 (45.16%), Postives = 54/93 (58.06%), Query Frame = 3
Query:  252 ATSEALVSSKRIKEEEVSSTTEENPTKE---KSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXXFSMRGSSAILNFPVE 521
            ++S  L SS    E + S    E   +E   + YRGVRRRPWGKFAAEIRD  + G R+WLGTF+S            F +RG  A+LNFP++
Sbjct:   77 SSSPELNSSSSTYETDQSVKKAERFEEEVDARHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESDVDAARAYDCAAFKLRGRKAVLNFPLD 169          
BLAST of DY258233 vs. ExPASy Swiss-Prot
Match: ERF91_ARATH (Ethylene-responsive transcription factor ERF091 OS=Arabidopsis thaliana GN=ERF091 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.084e-13
Identity = 39/77 (50.65%), Postives = 51/77 (66.23%), Query Frame = 3
Query:  330 KEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXXFSMRGS-SAILNFPVERVQESLKDMKCN 557
            K + YRGVR+RPWGKFAAEIRDSTR+G+RVWLGTF +              +RG+  A  NF +E V +++ +M CN
Sbjct:  106 KTRKYRGVRKRPWGKFAAEIRDSTRNGVRVWLGTFQTAEEAAMAYDKAAVRIRGTQKAHTNFQLETVIKAM-EMDCN 181          
BLAST of DY258233 vs. ExPASy Swiss-Prot
Match: ERF71_ARATH (Ethylene-responsive transcription factor ERF071 OS=Arabidopsis thaliana GN=ERF071 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.531e-12
Identity = 42/102 (41.18%), Postives = 62/102 (60.78%), Query Frame = 3
Query:  234 AKATPEATSEALVSSKRIKEEEVSSTTEENPTKEKS--YRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXXFSMRGSSAILNFPVERVQE 533
            +K+  E +    VSS++ K + VS + E +  +E+   YRG+R+RPWGK+AAEIRD ++ G+RVWLGTF +              +RG  A LNFP  +V+E
Sbjct:   13 SKSESEPSQLGSVSSRK-KRKPVSVSEERDGKRERKNLYRGIRQRPWGKWAAEIRDPSK-GVRVWLGTFKTADEAARAYDVAAIKIRGRKAKLNFPNTQVEE 112          
BLAST of DY258233 vs. ExPASy Swiss-Prot
Match: EF112_ARATH (Ethylene-responsive transcription factor ERF112 OS=Arabidopsis thaliana GN=ERF112 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.453e-12
Identity = 43/114 (37.72%), Postives = 63/114 (55.26%), Query Frame = 3
Query:  192 NENDSKEMLLYGLIAKA-----TPEATSEALVSSKRIKEEEVSSTTEENP-TKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXXFSMRGSSAILNFP 515
            N  + KE+     ++++       E T + + SS  I ++  S T +E   +++++YRGVR+RPWGK+AAEIRD  +   RVWLGTFD+            F  RG  A LNFP
Sbjct:   16 NREEKKELCCCSTLSESDVSDFVSELTGQPIPSS--IDDQSSSLTLQEKSNSRQRNYRGVRQRPWGKWAAEIRDPNK-AARVWLGTFDTAEEAALAYDKAAFEFRGHKAKLNFP 126          
BLAST of DY258233 vs. ExPASy Swiss-Prot
Match: CRF1_ARATH (Ethylene-responsive transcription factor CRF1 OS=Arabidopsis thaliana GN=CRF1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 7.596e-12
Identity = 40/110 (36.36%), Postives = 62/110 (56.36%), Query Frame = 3
Query:  231 IAKATPEATSEALVSSK-----RIKEEEVSSTTEENPTKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXXFSMRGSSAILNFPVERVQESLKD 545
            + K   E   +++VS K     + +++ V +      T  + +RGVR+RPWGK+AAEIRD +R  +RVWLGTFD+              +RG +A LNFP   V E++++
Sbjct:   45 VKKYVKEVVLDSVVSDKEKPMKKKRKKRVVTVPVVVTTATRKFRGVRQRPWGKWAAEIRDPSRR-VRVWLGTFDTAEEAAIVYDNAAIQLRGPNAELNFPPPPVTENVEE 153          
BLAST of DY258233 vs. ExPASy Swiss-Prot
Match: RA212_ARATH (Ethylene-responsive transcription factor RAP2-12 OS=Arabidopsis thaliana GN=RAP2-12 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.921e-12
Identity = 40/110 (36.36%), Postives = 58/110 (52.73%), Query Frame = 3
Query:  237 KATPEATSEALVSSKRIKEEEVSSTTEENPTKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXXFSMRGSSAILNFPVERVQESLKDMKCNTEE 566
            K    A +E  V  K++   +  +    N  ++  YRG+R+RPWGK+AAEIRD  R G R+WLGTF +              +RGS A +NFP E       +MK N+++
Sbjct:   90 KPAVSAAAEGSVFGKKVTGLDGDAEKSANRKRKNQYRGIRQRPWGKWAAEIRD-PREGARIWLGTFKTAEEAARAYDAAARRIRGSKAKVNFPEE-------NMKANSQK 191          
BLAST of DY258233 vs. ExPASy Swiss-Prot
Match: PTI6_SOLLC (Pathogenesis-related genes transcriptional activator PTI6 OS=Solanum lycopersicum GN=PTI6 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.921e-12
Identity = 37/88 (42.05%), Postives = 53/88 (60.23%), Query Frame = 3
Query:  273 SSKRIKEEEVSSTTEENP-TKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXXFSMRGSSAILNFPVERVQE 533
            S+K I + +  S + ++  T+ K +RGVR+RPWG++AAEIRD TR G RVWLGT+D+              ++G  A+ NFPV    E
Sbjct:   74 STKSIGDRKRRSVSPDSDVTRRKKFRGVRQRPWGRWAAEIRDPTR-GKRVWLGTYDTPEEAAVVYDKAAVKLKGPDAVTNFPVSTTAE 160          
BLAST of DY258233 vs. ExPASy Swiss-Prot
Match: EF110_ARATH (Ethylene-responsive transcription factor ERF110 OS=Arabidopsis thaliana GN=ERF110 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.296e-11
Identity = 40/97 (41.24%), Postives = 52/97 (53.61%), Query Frame = 3
Query:  225 GLIAKATPEATSEALVSSKRIKEEEVSSTTEENPTKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXXFSMRGSSAILNFP 515
            G+ +   P + +    S   I+E    +  EE   K++ YRGVR+RPWGK+AAEIRD  R   RVWLGTFD+               RG+ A LNFP
Sbjct:   38 GIDSAPIPSSFARVDSSHNPIEESMSKAFPEEAREKKRRYRGVRQRPWGKWAAEIRDPHR-AARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFP 133          
The following BLAST results are available for this feature:
BLAST of DY258233 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
EF103_ARATH4.303e-1559.38Ethylene-responsive transcription factor 6 OS=Arab... [more]
ERF98_ARATH9.587e-1552.05Ethylene-responsive transcription factor ERF098 OS... [more]
EF106_ARATH3.643e-1445.16Ethylene-responsive transcription factor ERF106 OS... [more]
ERF91_ARATH3.084e-1350.65Ethylene-responsive transcription factor ERF091 OS... [more]
ERF71_ARATH1.531e-1241.18Ethylene-responsive transcription factor ERF071 OS... [more]
EF112_ARATH4.453e-1237.72Ethylene-responsive transcription factor ERF112 OS... [more]
CRF1_ARATH7.596e-1236.36Ethylene-responsive transcription factor CRF1 OS=A... [more]
RA212_ARATH9.921e-1236.36Ethylene-responsive transcription factor RAP2-12 O... [more]
PTI6_SOLLC9.921e-1242.05Pathogenesis-related genes transcriptional activat... [more]
EF110_ARATH1.296e-1141.24Ethylene-responsive transcription factor ERF110 OS... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3CH05ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258233 ID=DY258233; Name=DY258233; organism=Citrus clementina; type=EST; length=974bp
CGGGGACTGAACTACGCAACACAACTAGGGAAAAAACAGAGTGAAAAACA
GAGTCTCAGAACCTGAACACACACTCTCATCAAATCCTAATGGATTCCTT
GTTCTTCCACTCTCCAAATTCAATTTCCTCATCGGAATCCTCTTTCGGGT
CACCGGAGTCTTTCCCTTTTTATAACAATTATCTTCCATTCAATGAAAAT
GACTCAAAAGAAATGCTTCTCTATGGACTAATAGCAAAAGCCACACCGGA
AGCAACATCAGAAGCACTAGTAAGCTCCAAGAGAATTAAAGAAGAAGAGG
TGAGTTCAACAACAGAGGAAAACCCCACCAAGGAAAAGTCATATAGAGGC
GTTCGACGGCGGCCGTGGGGGAAATTTGCAGCAGAAATAAGAGATTCAAC
TAGGCATGGGATTAGGGTTTGGCTAGGGACATTCGATAGTGCTGAAGCAG
CTGCTTTGGCTTACGATCAAGCTGCTTTCTCAATGAGGGGCTCTTCAGCT
ATACTCAATTTTCCCGTTGAAAGGGTTCAAGAATCACTTAAAGACATGAA
GTGTAACACCGAGGAGGGATGCTCACCTGTGGTTGCACTAAAGAGGAAAC
ATTCTATGAGAAGAAAAATGGTGACTAATAATAAGAAGCATAAAGAGAGA
GATAATTTGAGGATTGAAAATTTTGTGGTGTTGGAAGATTTAGGAGCAGA
TTACTTGGAAGAGCTGCTAAGTTCATCTGAAAGTACTACTACTACTACAG
CAAGACCTCGCTAATTGGTGAATTAGATAATAAGTCAACTACTTGTAACT
TTCTGGCCTTATCTTAATCTTCTTGCCCTTTTTTTTTTAATTTAGTTATT
GTCGTTATCTTCTTTTTTCATATGTAAACCAAAGACGGTTTATGCCTGTA
CAAGCTTCCATTTTTTGAAAGCAATTCGGGGGTGATCCTGTATCTAGTTT
CTTTTATTTAATACGAAGTTAAAT
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