DY258239

Overview
NameDY258239
Unique NameDY258239
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length587
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10087 contig Ccv1_Contig10087:4..590. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_RALSO (Chaperone protein clpB OS=Ralstonia solanacearum GN=clpB PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.976e-22
Identity = 47/99 (47.47%), Postives = 68/99 (68.69%), Query Frame = 3
Query:   21 FRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVID 317
            FRPEF+NR+DE +VF  LD+  I SI R+QL R+  R+A   + ++++D A+  L S GYDP +G RP+KR IQQ +EN +A+ IL G F  +D + +D
Sbjct:  751 FRPEFLNRIDEVVVFHALDQGHIESIARIQLQRLAARLAHMDLTLEISDPAVAKLASAGYDPVFGARPLKRAIQQQIENPVARMILEGRFTPKDVVPVD 849          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_AQUAE (Chaperone protein clpB OS=Aquifex aeolicus GN=clpB PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.580e-22
Identity = 56/136 (41.18%), Postives = 91/136 (66.91%), Query Frame = 3
Query:   24 RPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTEVTAFSNGQ---LPQQKLVFRRLDTSSDASAADNQEA 422
            RPEF+NR+DE IVF+PL   ++S I+ L +  V KR+A+R +K+++T+ A + L   GYDP +G RP+KR IQ+YVE  LA  I+RGE KD  T+V+D     + +G+   +P+++   ++ + S  AS+ + +E+
Sbjct:  878 RPEFINRIDEIIVFKPLTMRELSKIIDLLIANVNKRLAERNIKIELTEEAKKELVRRGYDPAFGARPLKRTIQKYVETPLADKIIRGEIKDGMTVVVD-----YKDGEFVFIPKEEYEKQKAEVS--ASSEEKKES 1006          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_CHRVO (Chaperone protein clpB OS=Chromobacterium violaceum GN=clpB PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.370e-22
Identity = 50/110 (45.45%), Postives = 73/110 (66.36%), Query Frame = 3
Query:   21 FRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTEVTAFSNGQL 350
            FRPEF+NR+DE +VF  LD   I SI R+QL  ++ R+A  ++ +Q++D A+ LL   G+DP YG RP+KR IQ  +EN LAK IL G++  + T++++       NGQL
Sbjct:  752 FRPEFINRIDEVVVFHGLDEKHIQSIARIQLKSLENRLAKLELSLQISDEALALLSEAGFDPVYGARPLKRAIQAELENPLAKAILAGKYPPKATVMVEAR-----NGQL 856          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_YERPE (Chaperone protein clpB OS=Yersinia pestis GN=clpB PE=3 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 4.401e-22
Identity = 48/107 (44.86%), Postives = 71/107 (66.36%), Query Frame = 3
Query:    3 DAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTE 323
            D     FRPEF+NR+DE +VF PL R  ++SI  +QL+R+ KR+ +R  ++++T  A++ LG  G+DP YG RP+KR IQQ +EN LA+ IL G+      + +D E
Sbjct:  743 DVVSHHFRPEFINRIDEVVVFHPLGRAHLASIANIQLERLYKRLEERGYEVKITQPALEFLGEAGFDPVYGARPLKRAIQQEIENPLAQQILSGKLIPGIPVTLDVE 849          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_NITEU (Chaperone protein clpB OS=Nitrosomonas europaea GN=clpB PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 5.748e-22
Identity = 50/113 (44.25%), Postives = 74/113 (65.49%), Query Frame = 3
Query:   12 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTEVTAFSNGQL 350
            ++ FRPEF+NR+DE +VF  L    I SI R+QL  + KR+A  +MK+ V++ A+  L  +G+DP +G RP+KR IQ  +EN LAK +L G F   DTI+++     +SNG +
Sbjct:  750 KTYFRPEFINRIDEVVVFHALGEAHIKSIARIQLSNLGKRLAQMEMKLVVSEPALTKLAEVGFDPVFGARPLKRAIQAQIENPLAKELLEGHFSAGDTILVE-----YSNGHM 857          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_THET8 (Chaperone protein clpB OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=clpB PE=1 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 7.507e-22
Identity = 46/99 (46.46%), Postives = 73/99 (73.74%), Query Frame = 3
Query:   21 FRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVID 317
            FRPEF+NR+DE +VF+PL ++QI  IV +QL  ++ R+A++++ +++T+AA   L   GYDP +G RP++RVIQ+ +E  LA+ IL GE K+ D + +D
Sbjct:  740 FRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKILAGEVKEGDRVQVD 838          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_THET2 (Chaperone protein clpB OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=clpB PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 7.507e-22
Identity = 46/99 (46.46%), Postives = 73/99 (73.74%), Query Frame = 3
Query:   21 FRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVID 317
            FRPEF+NR+DE +VF+PL ++QI  IV +QL  ++ R+A++++ +++T+AA   L   GYDP +G RP++RVIQ+ +E  LA+ IL GE K+ D + +D
Sbjct:  740 FRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKILAGEVKEGDRVQVD 838          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_STRCO (Chaperone protein clpB OS=Streptomyces coelicolor GN=clpB PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 7.507e-22
Identity = 45/105 (42.86%), Postives = 75/105 (71.43%), Query Frame = 3
Query:    3 DAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVID 317
            +  RS F+PEF+NR+D+ +VF  L ++++S I RLQ++ + +R+A+R++ ++VTD A+  L   G DP YG RP++R++Q  + + LA+ IL GE KD DT+ +D
Sbjct:  745 EVVRSSFKPEFLNRLDDLVVFSALSQEELSRIARLQINGLARRLAERRLTLEVTDEALAWLAEEGNDPAYGARPLRRLVQTAIGDRLAREILSGEIKDGDTVRVD 849          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_PSEPK (Chaperone protein clpB OS=Pseudomonas putida (strain KT2440) GN=clpB PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 7.507e-22
Identity = 48/107 (44.86%), Postives = 74/107 (69.16%), Query Frame = 3
Query:    3 DAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTE 323
            DA  + FRPEF+NR+DE +VF+PL R+QI+ I  +QL R++ R+ +R++ + ++  A+  L ++GYDP YG RP+KR IQ+++EN LA+ IL G+F     I    E
Sbjct:  741 DAVGAHFRPEFINRIDEVVVFEPLGREQIAGITEIQLGRLRSRLLERELSLSLSPEALDKLIAVGYDPVYGARPLKRAIQRWIENPLAQLILAGKFLPGTAITAKVE 847          
BLAST of DY258239 vs. ExPASy Swiss-Prot
Match: CLPB_MEIRU (Chaperone protein clpB OS=Meiothermus ruber GN=clpB PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 7.507e-22
Identity = 46/92 (50.00%), Postives = 72/92 (78.26%), Query Frame = 3
Query:   21 FRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKD 296
            FRPEF+NR+DE +VF+PL R+QI++IV++QL+ V+KR+A+R++ ++++  A+  L   GYDP +G RP+KRVIQ+ +E  L++ IL GE  D
Sbjct:  740 FRPEFLNRLDEIVVFRPLAREQIAAIVQIQLEAVRKRLAERRITLELSQEALDFLAQRGYDPVFGARPLKRVIQRELETPLSRKILAGEVAD 831          
The following BLAST results are available for this feature:
BLAST of DY258239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
CLPB_RALSO1.976e-2247.47Chaperone protein clpB OS=Ralstonia solanacearum G... [more]
CLPB_AQUAE2.580e-2241.18Chaperone protein clpB OS=Aquifex aeolicus GN=clpB... [more]
CLPB_CHRVO3.370e-2245.45Chaperone protein clpB OS=Chromobacterium violaceu... [more]
CLPB_YERPE4.401e-2244.86Chaperone protein clpB OS=Yersinia pestis GN=clpB ... [more]
CLPB_NITEU5.748e-2244.25Chaperone protein clpB OS=Nitrosomonas europaea GN... [more]
CLPB_THET87.507e-2246.46Chaperone protein clpB OS=Thermus thermophilus (st... [more]
CLPB_THET27.507e-2246.46Chaperone protein clpB OS=Thermus thermophilus (st... [more]
CLPB_STRCO7.507e-2242.86Chaperone protein clpB OS=Streptomyces coelicolor ... [more]
CLPB_PSEPK7.507e-2244.86Chaperone protein clpB OS=Pseudomonas putida (stra... [more]
CLPB_MEIRU7.507e-2250.00Chaperone protein clpB OS=Meiothermus ruber GN=clp... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3DA11ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258239 ID=DY258239; Name=DY258239; organism=Citrus clementina; type=EST; length=587bp
TGGATGCTGCAAGATCAATATTCCGCCCCGAGTTCATGAACCGAGTAGAT
GAGTATATAGTATTCCAACCACTGGACCGTGACCAGATAAGCAGTATTGT
GAGGTTACAGTTGGATCGGGTGCAGAAGAGGATTGCAGACCGGAAGATGA
AAATGCAAGTGACCGATGCAGCTATTCAGCTCCTTGGGAGTCTTGGGTAT
GACCCCAACTATGGTGGAAGGCCGGTCAAGAGAGTGATTCAGCAGTACGT
TGAAAATGAGCTTGCCAAGGGCATTCTGAGAGGGGAGTTCAAGGATGAAG
ACACAATTGTAATAGACACTGAAGTTACAGCATTTTCCAATGGCCAGCTT
CCGCAGCAAAAGCTAGTCTTCAGGAGACTTGATACCAGTTCGGATGCTTC
TGCTGCAGATAACCAAGAAGCTTTCTCACAGACAGCATAAATGTCTGTCC
AATGTGTTTAATTTTACCAAATTATATTTGTGTTCAGCAAAATTATGAGC
GAATTTTCTTAACTGATAGGCTGTAACCTGCTTCTTGTATATGATGATGC
TTTATACAAAATCATAAGCCTTGAAGAGTTTCTTTTT
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