DY258242

Overview
NameDY258242
Unique NameDY258242
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length930
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RB11A_PONAB (Ras-related protein Rab-11A OS=Pongo abelii GN=RAB11A PE=2 SV=3)

HSP 1 Score: 182.185 bits (461), Expect = 3.702e-45
Identity = 96/208 (46.15%), Postives = 138/208 (66.35%), Query Frame = 2
Query:  200 NEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANK-------SSGTVQMKGQPIQQNS---NCC 793
            +EYDYLFK++LIGDS VGKS LL RF  + +     STIGV+F  R++++DGKTIK QIWDTAGQER+R ITS+YYRGA G ++VYD+ +  ++ NV+RWL E+  +A+ ++  +LV NK DL   + V T  A+AFA++ G+ F+ETSA D+ NVE AF T+  EI + +  +  +++       S+  V +   P  +N     CC
Sbjct:    6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMSDRRENDMSPSNNVVPIHVPPTTENKPKVQCC 213          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RB11A_PIG (Ras-related protein Rab-11A OS=Sus scrofa GN=RAB11A PE=2 SV=3)

HSP 1 Score: 182.185 bits (461), Expect = 3.702e-45
Identity = 96/208 (46.15%), Postives = 138/208 (66.35%), Query Frame = 2
Query:  200 NEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANK-------SSGTVQMKGQPIQQNS---NCC 793
            +EYDYLFK++LIGDS VGKS LL RF  + +     STIGV+F  R++++DGKTIK QIWDTAGQER+R ITS+YYRGA G ++VYD+ +  ++ NV+RWL E+  +A+ ++  +LV NK DL   + V T  A+AFA++ G+ F+ETSA D+ NVE AF T+  EI + +  +  +++       S+  V +   P  +N     CC
Sbjct:    6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMSDRRENDMSPSNNVVPIHVPPTTENKPKVQCC 213          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RB11A_MOUSE (Ras-related protein Rab-11A OS=Mus musculus GN=Rab11a PE=1 SV=3)

HSP 1 Score: 182.185 bits (461), Expect = 3.702e-45
Identity = 96/208 (46.15%), Postives = 138/208 (66.35%), Query Frame = 2
Query:  200 NEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANK-------SSGTVQMKGQPIQQNS---NCC 793
            +EYDYLFK++LIGDS VGKS LL RF  + +     STIGV+F  R++++DGKTIK QIWDTAGQER+R ITS+YYRGA G ++VYD+ +  ++ NV+RWL E+  +A+ ++  +LV NK DL   + V T  A+AFA++ G+ F+ETSA D+ NVE AF T+  EI + +  +  +++       S+  V +   P  +N     CC
Sbjct:    6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMSDRRENDMSPSNNVVPIHVPPTTENKPKVQCC 213          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RB11A_HUMAN (Ras-related protein Rab-11A OS=Homo sapiens GN=RAB11A PE=1 SV=3)

HSP 1 Score: 182.185 bits (461), Expect = 3.702e-45
Identity = 96/208 (46.15%), Postives = 138/208 (66.35%), Query Frame = 2
Query:  200 NEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANK-------SSGTVQMKGQPIQQNS---NCC 793
            +EYDYLFK++LIGDS VGKS LL RF  + +     STIGV+F  R++++DGKTIK QIWDTAGQER+R ITS+YYRGA G ++VYD+ +  ++ NV+RWL E+  +A+ ++  +LV NK DL   + V T  A+AFA++ G+ F+ETSA D+ NVE AF T+  EI + +  +  +++       S+  V +   P  +N     CC
Sbjct:    6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMSDRRENDMSPSNNVVPIHVPPTTENKPKVQCC 213          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RB11A_CHICK (Ras-related protein Rab-11A OS=Gallus gallus GN=RAB11A PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 3.702e-45
Identity = 96/208 (46.15%), Postives = 138/208 (66.35%), Query Frame = 2
Query:  200 NEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANK-------SSGTVQMKGQPIQQNS---NCC 793
            +EYDYLFK++LIGDS VGKS LL RF  + +     STIGV+F  R++++DGKTIK QIWDTAGQER+R ITS+YYRGA G ++VYD+ +  ++ NV+RWL E+  +A+ ++  +LV NK DL   + V T  A+AFA++ G+ F+ETSA D+ NVE AF T+  EI + +  +  +++       S+  V +   P  +N     CC
Sbjct:    6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMSDRRENDMSPSNNVVPIHVPPTTENKPKMQCC 213          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RB11A_CANFA (Ras-related protein Rab-11A OS=Canis familiaris GN=RAB11A PE=2 SV=3)

HSP 1 Score: 182.185 bits (461), Expect = 3.702e-45
Identity = 96/208 (46.15%), Postives = 138/208 (66.35%), Query Frame = 2
Query:  200 NEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANK-------SSGTVQMKGQPIQQNS---NCC 793
            +EYDYLFK++LIGDS VGKS LL RF  + +     STIGV+F  R++++DGKTIK QIWDTAGQER+R ITS+YYRGA G ++VYD+ +  ++ NV+RWL E+  +A+ ++  +LV NK DL   + V T  A+AFA++ G+ F+ETSA D+ NVE AF T+  EI + +  +  +++       S+  V +   P  +N     CC
Sbjct:    6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMSDRRENDMSPSNNVVPIHVPPTTENKPKVQCC 213          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RGP2_ORYSJ (Ras-related protein RGP2 OS=Oryza sativa subsp. japonica GN=RGP2 PE=2 SV=2)

HSP 1 Score: 181.8 bits (460), Expect = 4.834e-45
Identity = 89/183 (48.63%), Postives = 130/183 (71.04%), Query Frame = 2
Query:  194 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSS 742
            + +EY YLFK++LIGDS VGKS +L RF  + +     STIGV+F  ++++++GKTIK QIWDTAGQER+R ITS+YYRGA G ++VYD+T+ +SF+NV RWL E+  +A+ S+  ++V NK DL+  + V     KA A++ G+ FLETSA +A+NVE+AF T+  E+   +  +  A K +
Sbjct:    5 VDHEYSYLFKMVLIGDSGVGKSNILSRFTRNHFSLDSKSTIGVEFATKSLQMEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQSFDNVHRWLRELRDHADSSIVIMMVGNKSDLIHLRAVSEDEGKALAEKEGLFFLETSAMEAVNVEEAFQTIITEVYGIVNRKALAAKEA 187          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RB11A_BOVIN (Ras-related protein Rab-11A OS=Bos taurus GN=RAB11A PE=2 SV=3)

HSP 1 Score: 181.03 bits (458), Expect = 8.246e-45
Identity = 96/208 (46.15%), Postives = 137/208 (65.87%), Query Frame = 2
Query:  200 NEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANK-------SSGTVQMKGQPIQQNS---NCC 793
            +EYDYLFK++LIGDS VGKS LL RF  + +     STIGV+F  R++++DGKTIK QIWDTAGQER+R ITS+YYRGA G ++VYD+ +  ++ NV+RWL E+  +A+ ++  +LV NK DL   + V T  A+AFA++ G+ F+ETSA D  NVE AF T+  EI + +  +  +++       S+  V +   P  +N     CC
Sbjct:    6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDYTNVEAAFQTILTEIYRIVSQKQMSDRRENDMSPSNNVVPIHVPPTTENKPKVQCC 213          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB2_LYMST (Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=RAB2 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 8.246e-45
Identity = 93/210 (44.29%), Postives = 133/210 (63.33%), Query Frame = 2
Query:  206 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGN--------------QPTANKSSGTVQMKGQPIQQNSNCC 793
            Y YLFK ++IGD+ VGKSCLLL+F D  +   +  TIGV+F  R + +DGK IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T  ++FN++  WL +  +++N ++  +L+ NK DL   + V  +  +AFA E G+ F+ETSAK A NVE+AF+  A EI +K+ +               P  + +S ++ + G    Q  NCC
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLEARREVKKEEGEAFAREHGLIFMETSAKTAANVEEAFINTAKEIYQKIQDGVFDINNEANGIKIGPQHSPASQSLNVGGSGGNQGGNCC 212          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB2B_HUMAN (Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2B PE=1 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 8.246e-45
Identity = 97/214 (45.33%), Postives = 133/214 (62.15%), Query Frame = 2
Query:  206 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK----------------KMGNQPTANKSSG--TVQMKGQPIQQNSNCC 793
            Y YLFK ++IGD+ VGKSCLLL+F D  +   +  TIGV+F  R V +DGK IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T  E+FN++  WL +  ++++ ++  +L+ NK DL   + V  +  +AFA E G+ F+ETSAK A NVE+AF+  A EI +                K+G Q + + S G    Q   + I  NS CC
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQGLFDVHNEANGIKIGPQQSISTSVGPSASQRNSRDIGSNSGCC 216          
The following BLAST results are available for this feature:
BLAST of DY258242 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB11A_PONAB3.702e-4546.15Ras-related protein Rab-11A OS=Pongo abelii GN=RAB... [more]
RB11A_PIG3.702e-4546.15Ras-related protein Rab-11A OS=Sus scrofa GN=RAB11... [more]
RB11A_MOUSE3.702e-4546.15Ras-related protein Rab-11A OS=Mus musculus GN=Rab... [more]
RB11A_HUMAN3.702e-4546.15Ras-related protein Rab-11A OS=Homo sapiens GN=RAB... [more]
RB11A_CHICK3.702e-4546.15Ras-related protein Rab-11A OS=Gallus gallus GN=RA... [more]
RB11A_CANFA3.702e-4546.15Ras-related protein Rab-11A OS=Canis familiaris GN... [more]
RGP2_ORYSJ4.834e-4548.63Ras-related protein RGP2 OS=Oryza sativa subsp. ja... [more]
RB11A_BOVIN8.246e-4546.15Ras-related protein Rab-11A OS=Bos taurus GN=RAB11... [more]
RAB2_LYMST8.246e-4544.29Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=... [more]
RAB2B_HUMAN8.246e-4545.33Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3DB07ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258242 ID=DY258242; Name=DY258242; organism=Citrus clementina; type=EST; length=930bp
GAATGAATGTCGTAAACAGTAATTAAATAATAGCAATAATGAGTGGACAA
AGCTAAGTTCGAGAGGTGAGATAGAAAATTCTCCCGCACGACACAGCGCA
AACAAACTTTCCCTTTCATTTTCTTTTTCTCTTTCTCGCTCTCCAAACAG
GGCAAACGGACCGTCGCAAGATTCTTTACTTCCATCCAAAATCATGAGCA
ACGAATACGACTATCTGTTCAAGCTGTTGCTTATCGGAGACTCGTCCGTC
GGGAAGTCCTGCCTGCTGCTCCGATTTGCTGATGATTCTTATGTCGACAG
CTACATCAGTACCATTGGAGTTGATTTTAAAATAAGAACTGTGGAGCTGG
ATGGGAAGACGATCAAACTGCAGATTTGGGACACTGCTGGACAGGAGCGA
TTCAGGACTATAACTAGCAGTTATTACCGAGGAGCCCATGGAATCATAAT
TGTCTATGACGTAACTGAGATGGAGAGCTTCAATAATGTCAAGCGGTGGT
TGAATGAGATTGACAGATACGCAAATGACAGTGTATGCAAGCTTCTAGTT
TGGAACAAATGCGATTTAGTTGAGAACAAGGTTGTGGACACACAGACAGC
CAAGGCATTTGCAGATGAACTGGGGATTCCTTTCCTGGAGACGAGCGCCA
AAGATGCAATCAATGTGGAGCAGGCTTTCTTGACCATGGCTGGCGAGATT
AAGAAAAAAATGGGCAACCAGCCTACTGCAAACAAATCTTCTGGAACAGT
TCAGATGAAGGGACAGCCAATCCAGCAAAACAGCAACTGCTGTGGTTAGC
CGAGCATGTTATTTTACTACTACATATTAGCTGACTGATTGTAGACAGTT
TTAACGATGTTGACTGCATTATCTTATGAATCTTTTAATCTGTCAAATAT
TTATTTCCTGGTTTAAGTTCTTTCCCCGTT
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