DY258242

Overview
NameDY258242
Unique NameDY258242
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length930
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB2A_MAIZE (Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 1.077e-44
Identity = 92/182 (50.55%), Postives = 124/182 (68.13%), Query Frame = 2
Query:  206 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM--GNQPTANKSSG 745
            Y YLFK ++IGD+ VGKSCLLL+F D  +   +  TIGV+F  R + +D K IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T  E+FN++  WL +  ++AN ++  +LV NKCDL   + V  +  + FA E G+ F+E SAK A NVE+AF+  AG I KK+  G    +N+S G
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLVGNKCDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAGAIYKKIQDGVFDVSNESYG 184          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RB11D_TOBAC (Ras-related protein Rab11D OS=Nicotiana tabacum GN=RAB11D PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.407e-44
Identity = 96/212 (45.28%), Postives = 141/212 (66.51%), Query Frame = 2
Query:  197 SNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEI-----KKKMG---NQPTANKSSGT-----VQMKGQPIQQNSNCC 793
            S + DY+FK++LIGDS+VGKS +L RFA + +     +TIGV+F+ RT+ +  K++K QIWDTAGQER+R +TS+YYRGA G ++VYD+T+ ++F+++ RWL E+  +A+ ++  +L+ NK DL + + V T+ AK FA + G+ FLETSA +A N+E AFLT+  EI     KK +    NQ   N +S T     V   GQ I +   CC
Sbjct:    9 SQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLAIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRAHADRNIVIMLIGNKTDLEDQRAVPTEDAKEFAQKEGLFFLETSAMEATNLEDAFLTVLTEIFNIVNKKNLAADDNQSNGNPASLTGKKILVPGPGQVIPEKKACC 220          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RB11B_DISOM (Ras-related protein Rab-11B OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.407e-44
Identity = 89/181 (49.17%), Postives = 131/181 (72.38%), Query Frame = 2
Query:  200 NEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSS 742
            +EYDYLFK++LIGDS VGKS LL RF  + +     STIGV+F  R++++DGKTIK QIWDTAGQER+R ITS+YYRGA G ++VYD+ +  ++ NV+RWL E+  +A++++  +LV NK DL   + V T  A+AFA++  + F+ETSA D+ NVE+AF  +  EI + +  +  +++S+
Sbjct:    6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADNNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQISDRSA 186          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB2B_MAIZE (Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.407e-44
Identity = 92/182 (50.55%), Postives = 124/182 (68.13%), Query Frame = 2
Query:  206 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM--GNQPTANKSSG 745
            Y YLFK ++IGD+ VGKSCLLL+F D  +   +  TIGV+F  R + +D K IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T  E+FN++  WL +  ++AN ++  +LV NKCDL   + V  +  + FA E G+ F+E SAK A NVE+AF+  AG I KK+  G    +N+S G
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLVGNKCDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAGAIYKKIQDGVFDVSNESYG 184          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RB11B_RAT (Ras-related protein Rab-11B OS=Rattus norvegicus GN=Rab11b PE=2 SV=4)

HSP 1 Score: 179.874 bits (455), Expect = 1.837e-44
Identity = 89/181 (49.17%), Postives = 130/181 (71.82%), Query Frame = 2
Query:  200 NEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSS 742
            +EYDYLFK++LIGDS VGKS LL RF  + +     STIGV+F  R++++DGKTIK QIWDTAGQER+R ITS+YYRGA G ++VYD+ +  ++ NV+RWL E+  +A+ ++  +LV NK DL   + V T  A+AFA++  + F+ETSA D+ NVE+AF  +  EI + +  +  A++++
Sbjct:    6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAA 186          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RB11B_MOUSE (Ras-related protein Rab-11B OS=Mus musculus GN=Rab11b PE=1 SV=3)

HSP 1 Score: 179.874 bits (455), Expect = 1.837e-44
Identity = 89/181 (49.17%), Postives = 130/181 (71.82%), Query Frame = 2
Query:  200 NEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSS 742
            +EYDYLFK++LIGDS VGKS LL RF  + +     STIGV+F  R++++DGKTIK QIWDTAGQER+R ITS+YYRGA G ++VYD+ +  ++ NV+RWL E+  +A+ ++  +LV NK DL   + V T  A+AFA++  + F+ETSA D+ NVE+AF  +  EI + +  +  A++++
Sbjct:    6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAA 186          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RB11B_HUMAN (Ras-related protein Rab-11B OS=Homo sapiens GN=RAB11B PE=1 SV=4)

HSP 1 Score: 179.874 bits (455), Expect = 1.837e-44
Identity = 89/181 (49.17%), Postives = 130/181 (71.82%), Query Frame = 2
Query:  200 NEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSS 742
            +EYDYLFK++LIGDS VGKS LL RF  + +     STIGV+F  R++++DGKTIK QIWDTAGQER+R ITS+YYRGA G ++VYD+ +  ++ NV+RWL E+  +A+ ++  +LV NK DL   + V T  A+AFA++  + F+ETSA D+ NVE+AF  +  EI + +  +  A++++
Sbjct:    6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAA 186          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RB11B_BOVIN (Ras-related protein Rab-11B OS=Bos taurus GN=RAB11B PE=2 SV=3)

HSP 1 Score: 179.874 bits (455), Expect = 1.837e-44
Identity = 89/181 (49.17%), Postives = 130/181 (71.82%), Query Frame = 2
Query:  200 NEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSS 742
            +EYDYLFK++LIGDS VGKS LL RF  + +     STIGV+F  R++++DGKTIK QIWDTAGQER+R ITS+YYRGA G ++VYD+ +  ++ NV+RWL E+  +A+ ++  +LV NK DL   + V T  A+AFA++  + F+ETSA D+ NVE+AF  +  EI + +  +  A++++
Sbjct:    6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAA 186          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAA2C_ARATH (Ras-related protein RABA2c OS=Arabidopsis thaliana GN=RABA2C PE=2 SV=4)

HSP 1 Score: 179.489 bits (454), Expect = 2.399e-44
Identity = 92/188 (48.94%), Postives = 130/188 (69.15%), Query Frame = 2
Query:  194 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEI-----KKKMGNQPTANKSS 742
            +  EYDYLFK++LIGDS VGKS +L RF  + +     STIGV+F  RT +++GKTIK QIWDTAGQER+R ITS+YYRGA G ++VYD+T+ ++F+NV RWL E+  +A+ ++  ++  NK DL   + V  +  ++ A++ G+ FLETSA +A NVE+AF T+ GEI     KK +  Q  A  +S
Sbjct:    5 VDQEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTTQVEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQSLAEKEGLSFLETSALEATNVEKAFQTILGEIYHIISKKALAAQEAAAANS 192          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: YPTC6_CHLRE (Ras-related protein YPTC6 OS=Chlamydomonas reinhardtii GN=YPTC6 PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 3.134e-44
Identity = 88/167 (52.69%), Postives = 123/167 (73.65%), Query Frame = 2
Query:  200 NEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEI 700
            ++YDYLFK++LIGDS VGKS LL RF  + +     STIGV+F  R++++DGKTIK QIWDTAGQER+R ITS+YYRGA G ++VYD+T+  +F NV+RWL E+  +A+ ++  +LV NK DL   + V T+ A+AF +  G+ F+ETSA ++ NVE+AF  +  EI
Sbjct:    7 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKSVTFENVERWLKELRDHADSNIVIMLVGNKSDLKHLRDVQTEVAQAFCEREGLSFIETSALESTNVEKAFQQILTEI 173          
The following BLAST results are available for this feature:
BLAST of DY258242 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB2A_MAIZE1.077e-4450.55Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A P... [more]
RB11D_TOBAC1.407e-4445.28Ras-related protein Rab11D OS=Nicotiana tabacum GN... [more]
RB11B_DISOM1.407e-4449.17Ras-related protein Rab-11B OS=Discopyge ommata PE... [more]
RAB2B_MAIZE1.407e-4450.55Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B P... [more]
RB11B_RAT1.837e-4449.17Ras-related protein Rab-11B OS=Rattus norvegicus G... [more]
RB11B_MOUSE1.837e-4449.17Ras-related protein Rab-11B OS=Mus musculus GN=Rab... [more]
RB11B_HUMAN1.837e-4449.17Ras-related protein Rab-11B OS=Homo sapiens GN=RAB... [more]
RB11B_BOVIN1.837e-4449.17Ras-related protein Rab-11B OS=Bos taurus GN=RAB11... [more]
RAA2C_ARATH2.399e-4448.94Ras-related protein RABA2c OS=Arabidopsis thaliana... [more]
YPTC6_CHLRE3.134e-4452.69Ras-related protein YPTC6 OS=Chlamydomonas reinhar... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3DB07ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258242 ID=DY258242; Name=DY258242; organism=Citrus clementina; type=EST; length=930bp
GAATGAATGTCGTAAACAGTAATTAAATAATAGCAATAATGAGTGGACAA
AGCTAAGTTCGAGAGGTGAGATAGAAAATTCTCCCGCACGACACAGCGCA
AACAAACTTTCCCTTTCATTTTCTTTTTCTCTTTCTCGCTCTCCAAACAG
GGCAAACGGACCGTCGCAAGATTCTTTACTTCCATCCAAAATCATGAGCA
ACGAATACGACTATCTGTTCAAGCTGTTGCTTATCGGAGACTCGTCCGTC
GGGAAGTCCTGCCTGCTGCTCCGATTTGCTGATGATTCTTATGTCGACAG
CTACATCAGTACCATTGGAGTTGATTTTAAAATAAGAACTGTGGAGCTGG
ATGGGAAGACGATCAAACTGCAGATTTGGGACACTGCTGGACAGGAGCGA
TTCAGGACTATAACTAGCAGTTATTACCGAGGAGCCCATGGAATCATAAT
TGTCTATGACGTAACTGAGATGGAGAGCTTCAATAATGTCAAGCGGTGGT
TGAATGAGATTGACAGATACGCAAATGACAGTGTATGCAAGCTTCTAGTT
TGGAACAAATGCGATTTAGTTGAGAACAAGGTTGTGGACACACAGACAGC
CAAGGCATTTGCAGATGAACTGGGGATTCCTTTCCTGGAGACGAGCGCCA
AAGATGCAATCAATGTGGAGCAGGCTTTCTTGACCATGGCTGGCGAGATT
AAGAAAAAAATGGGCAACCAGCCTACTGCAAACAAATCTTCTGGAACAGT
TCAGATGAAGGGACAGCCAATCCAGCAAAACAGCAACTGCTGTGGTTAGC
CGAGCATGTTATTTTACTACTACATATTAGCTGACTGATTGTAGACAGTT
TTAACGATGTTGACTGCATTATCTTATGAATCTTTTAATCTGTCAAATAT
TTATTTCCTGGTTTAAGTTCTTTCCCCGTT
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