DY258242

Overview
NameDY258242
Unique NameDY258242
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length930
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB30_MOUSE (Ras-related protein Rab-30 OS=Mus musculus GN=Rab30 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 3.134e-44
Identity = 89/196 (45.41%), Postives = 131/196 (66.84%), Query Frame = 2
Query:  203 EYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGTVQMKGQPIQQNSNC 790
            +YD+LFK++LIG++ VGK+CL+ RF    +     +TIGVDF I+TVE++G+ +KLQIWDTAGQERFR+IT SYYR A+ +I+ YD+T  ESF  +  WL EI++YA++ V  +LV NK DL E + V  Q A+ F++   + +LETSAK++ NVE+ FL +A  +  +       N  S  +  +G+ I   + C
Sbjct:    5 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQNTLVNNVSSPLPGEGKSISYLTCC 200          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB30_HUMAN (Ras-related protein Rab-30 OS=Homo sapiens GN=RAB30 PE=1 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 3.134e-44
Identity = 89/196 (45.41%), Postives = 131/196 (66.84%), Query Frame = 2
Query:  203 EYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGTVQMKGQPIQQNSNC 790
            +YD+LFK++LIG++ VGK+CL+ RF    +     +TIGVDF I+TVE++G+ +KLQIWDTAGQERFR+IT SYYR A+ +I+ YD+T  ESF  +  WL EI++YA++ V  +LV NK DL E + V  Q A+ F++   + +LETSAK++ NVE+ FL +A  +  +       N  S  +  +G+ I   + C
Sbjct:    5 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQNTLVNNVSSPLPGEGKSISYLTCC 200          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB30_BOVIN (Ras-related protein Rab-30 OS=Bos taurus GN=RAB30 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 3.134e-44
Identity = 89/196 (45.41%), Postives = 131/196 (66.84%), Query Frame = 2
Query:  203 EYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGTVQMKGQPIQQNSNC 790
            +YD+LFK++LIG++ VGK+CL+ RF    +     +TIGVDF I+TVE++G+ +KLQIWDTAGQERFR+IT SYYR A+ +I+ YD+T  ESF  +  WL EI++YA++ V  +LV NK DL E + V  Q A+ F++   + +LETSAK++ NVE+ FL +A  +  +       N  S  +  +G+ I   + C
Sbjct:    5 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQNTLVNNVSSPLPGEGKSISYLTCC 200          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB19_BOVIN (Ras-related protein Rab-19 OS=Bos taurus GN=RAB19 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 4.093e-44
Identity = 83/197 (42.13%), Postives = 133/197 (67.51%), Query Frame = 2
Query:  185 SKIMSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELG-IPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGTVQMKGQPI 772
            ++ +   +DYLFK++LIGDS+VGK+C++  F    Y+++  +TIGVDF +R +E+DGK +K+Q+WDTAGQERFRTIT SYYR AH  II YD+T   +F +V  W++EI++Y   ++  +L+ NKCDL E + V  + A   A++ G +  LETSAK++ N+++ F+ MA E+  +         + G++ ++  P+
Sbjct:    7 ARTVDENFDYLFKIILIGDSNVGKTCVVQHFKSGVYMEAQQNTIGVDFTVRALEIDGKKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNKCDLWEKRHVLFEDACILAEKYGLLAVLETSAKESKNIDEVFVLMARELMARHSLPLYGEGAPGSLPLESTPV 203          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB43_RAT (Ras-related protein Rab-43 OS=Rattus norvegicus GN=Rab43 PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 6.981e-44
Identity = 86/196 (43.88%), Postives = 134/196 (68.37%), Query Frame = 2
Query:  206 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGI-PFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGTVQMKGQPIQQNSNC 790
            YD+LFKL+L+GD+SVGK+C++ RF   ++     STIGVDF ++T+E+ GK +KLQIWDTAGQERFRTIT SYYR A+G I+ YD+++  +F +V  W+ ++ +YA  ++ +LL+ NK DL + + V    A++ A+   I   +ETSAKD+ NVE+AF  +A E+  + G    + K++  +Q+  + I ++  C
Sbjct:   13 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSARQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDISKRSTFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLADLREVPLAEAQSLAEHYDILCAIETSAKDSSNVEEAFTRVATELIMRHGGPMFSEKNTDHIQLDSKDIAESWGC 208          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB43_MOUSE (Ras-related protein Rab-43 OS=Mus musculus GN=Rab43 PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 6.981e-44
Identity = 86/196 (43.88%), Postives = 134/196 (68.37%), Query Frame = 2
Query:  206 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGI-PFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGTVQMKGQPIQQNSNC 790
            YD+LFKL+L+GD+SVGK+C++ RF   ++     STIGVDF ++T+E+ GK +KLQIWDTAGQERFRTIT SYYR A+G I+ YD+++  +F +V  W+ ++ +YA  ++ +LL+ NK DL + + V    A++ A+   I   +ETSAKD+ NVE+AF  +A E+  + G    + K++  +Q+  + I ++  C
Sbjct:   13 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSARQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDISKRSTFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLADFREVPLAEAQSLAEHYDILCAIETSAKDSSNVEEAFTRVATELIMRHGGPMFSEKNTDHIQLDSKDIAESWGC 208          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB2A_MOUSE (Ras-related protein Rab-2A OS=Mus musculus GN=Rab2a PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 6.981e-44
Identity = 95/212 (44.81%), Postives = 130/212 (61.32%), Query Frame = 2
Query:  206 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK----------------KMGNQPTANKSSGTVQMKGQPIQQNSNCC 793
            Y YLFK ++IGD+ VGKSCLLL+F D  +   +  TIGV+F  R + +DGK IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T  ++FN++  WL +  +++N ++  +L+ NK DL   + V  +  +AFA E G+ F+ETSAK A NVE+AF+  A EI +                K+G Q  A  +S      GQ  Q    CC
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEANGIKIGPQHAATNASHGSNQGGQ--QAGGGCC 212          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB15_RAT (Ras-related protein Rab-15 OS=Rattus norvegicus GN=Rab15 PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 6.981e-44
Identity = 79/162 (48.77%), Postives = 119/162 (73.46%), Query Frame = 2
Query:  194 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAF 679
            M+ +YD LF+LLLIGDS VGK+CLL RF D+ +  S+ISTIGVDFK++T+E+DG  +++QIWDTAGQER++TIT  YYR A GI +VYD++   S+ ++ +W++++D YA + V K+L+ NK D  + + V  +  +  A E G+ F ETSA   +N++++F
Sbjct:    1 MAKQYDVLFRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGREQGQQLAKEYGMDFYETSACTNLNIKESF 162          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB15_HUMAN (Ras-related protein Rab-15 OS=Homo sapiens GN=RAB15 PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 6.981e-44
Identity = 79/162 (48.77%), Postives = 119/162 (73.46%), Query Frame = 2
Query:  194 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAF 679
            M+ +YD LF+LLLIGDS VGK+CLL RF D+ +  S+ISTIGVDFK++T+E+DG  +++QIWDTAGQER++TIT  YYR A GI +VYD++   S+ ++ +W++++D YA + V K+L+ NK D  + + V  +  +  A E G+ F ETSA   +N++++F
Sbjct:    1 MAKQYDVLFRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGREQGQQLAKEYGMDFYETSACTNLNIKESF 162          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB15_BOVIN (Ras-related protein Rab-15 OS=Bos taurus GN=RAB15 PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 6.981e-44
Identity = 84/194 (43.30%), Postives = 130/194 (67.01%), Query Frame = 2
Query:  194 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAF-----LTMAGEIKKKMGNQPTANKSSGTVQMK 760
            M+ +YD LF+LLLIGDS VGK+CLL RF D+ +  S+ISTIGVDFK++T+E+DG  +++QIWDTAGQER++TIT  YYR A GI +VYD++   S+ ++ +W++++D YA + V K+L+ NK D  + + V  +  +  A E G+ F ETSA   +N++++F     L +    K+  G +  AN      +++
Sbjct:    1 MAKQYDVLFRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGREQGQQLAREYGMDFYETSACTNLNIKESFTRLTELVLQAHRKELEGLRTRANHELALAELE 194          
The following BLAST results are available for this feature:
BLAST of DY258242 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB30_MOUSE3.134e-4445.41Ras-related protein Rab-30 OS=Mus musculus GN=Rab3... [more]
RAB30_HUMAN3.134e-4445.41Ras-related protein Rab-30 OS=Homo sapiens GN=RAB3... [more]
RAB30_BOVIN3.134e-4445.41Ras-related protein Rab-30 OS=Bos taurus GN=RAB30 ... [more]
RAB19_BOVIN4.093e-4442.13Ras-related protein Rab-19 OS=Bos taurus GN=RAB19 ... [more]
RAB43_RAT6.981e-4443.88Ras-related protein Rab-43 OS=Rattus norvegicus GN... [more]
RAB43_MOUSE6.981e-4443.88Ras-related protein Rab-43 OS=Mus musculus GN=Rab4... [more]
RAB2A_MOUSE6.981e-4444.81Ras-related protein Rab-2A OS=Mus musculus GN=Rab2... [more]
RAB15_RAT6.981e-4448.77Ras-related protein Rab-15 OS=Rattus norvegicus GN... [more]
RAB15_HUMAN6.981e-4448.77Ras-related protein Rab-15 OS=Homo sapiens GN=RAB1... [more]
RAB15_BOVIN6.981e-4443.30Ras-related protein Rab-15 OS=Bos taurus GN=RAB15 ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3DB07ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258242 ID=DY258242; Name=DY258242; organism=Citrus clementina; type=EST; length=930bp
GAATGAATGTCGTAAACAGTAATTAAATAATAGCAATAATGAGTGGACAA
AGCTAAGTTCGAGAGGTGAGATAGAAAATTCTCCCGCACGACACAGCGCA
AACAAACTTTCCCTTTCATTTTCTTTTTCTCTTTCTCGCTCTCCAAACAG
GGCAAACGGACCGTCGCAAGATTCTTTACTTCCATCCAAAATCATGAGCA
ACGAATACGACTATCTGTTCAAGCTGTTGCTTATCGGAGACTCGTCCGTC
GGGAAGTCCTGCCTGCTGCTCCGATTTGCTGATGATTCTTATGTCGACAG
CTACATCAGTACCATTGGAGTTGATTTTAAAATAAGAACTGTGGAGCTGG
ATGGGAAGACGATCAAACTGCAGATTTGGGACACTGCTGGACAGGAGCGA
TTCAGGACTATAACTAGCAGTTATTACCGAGGAGCCCATGGAATCATAAT
TGTCTATGACGTAACTGAGATGGAGAGCTTCAATAATGTCAAGCGGTGGT
TGAATGAGATTGACAGATACGCAAATGACAGTGTATGCAAGCTTCTAGTT
TGGAACAAATGCGATTTAGTTGAGAACAAGGTTGTGGACACACAGACAGC
CAAGGCATTTGCAGATGAACTGGGGATTCCTTTCCTGGAGACGAGCGCCA
AAGATGCAATCAATGTGGAGCAGGCTTTCTTGACCATGGCTGGCGAGATT
AAGAAAAAAATGGGCAACCAGCCTACTGCAAACAAATCTTCTGGAACAGT
TCAGATGAAGGGACAGCCAATCCAGCAAAACAGCAACTGCTGTGGTTAGC
CGAGCATGTTATTTTACTACTACATATTAGCTGACTGATTGTAGACAGTT
TTAACGATGTTGACTGCATTATCTTATGAATCTTTTAATCTGTCAAATAT
TTATTTCCTGGTTTAAGTTCTTTCCCCGTT
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