DY258242

Overview
NameDY258242
Unique NameDY258242
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length930
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RB11E_LOTJA (Ras-related protein Rab11E OS=Lotus japonicus GN=RAB11E PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.317e-42
Identity = 94/199 (47.24%), Postives = 125/199 (62.81%), Query Frame = 2
Query:  200 NEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAF---LTMAGEIKKKMGNQPTANKSSGTVQMKGQPIQQNSN 787
            +EYDYLFKL+LIGDS VGKS LL RF  + +     STIGV+F  +++ +DGK IK QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F    RWL E+  + + ++  +L+ NK DL     V T+  KAFA++  + F+ETSA +A NVE AF   LT    I  K   +     S+  V  +GQ I  N +
Sbjct:    8 DEYDYLFKLVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSLNIDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRSTTFETAGRWLKELRDHTDPNIVVMLIGNKSDLRHLVTVSTEDGKAFAEKESLYFMETSALEATNVENAFSEVLTQIYRIVSKRAVEAGDRPSTSVVPSQGQTINVNED 206          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB12_HUMAN (Putative Ras-related protein Rab-12 OS=Homo sapiens GN=RAB12 PE=5 SV=3)

HSP 1 Score: 173.711 bits (439), Expect = 1.317e-42
Identity = 85/182 (46.70%), Postives = 127/182 (69.78%), Query Frame = 2
Query:  209 DYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADEL-GIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGTV 751
            D+  ++++IG   VGK+ L+ RF DD++ ++  ST+GVDFKI+TVEL GK I+LQIWDTAGQERF +ITS+YYR A GII+VYD+T+ E+F+++ +W+  ID+YA++    LLV NK D   ++ +  Q  + FA ++ G+ F E SAKD  NV++ FL +  +I KKM      N+ S ++
Sbjct:   40 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKMPLDILRNELSNSI 221          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAA1B_ARATH (Ras-related protein RABA1b OS=Arabidopsis thaliana GN=RABA1B PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.317e-42
Identity = 89/195 (45.64%), Postives = 127/195 (65.13%), Query Frame = 2
Query:  194 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGTVQM-KGQPIQ 775
            + ++YDYLFK++LIGDS VGKS LL RF  + +     STIGV+F  RT+++DGK +K QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV RWL E+  + + ++  +LV NK DL     V T+  K++A++  + F+ETSA +A NVE AF  +  +I +    +       G   + KG+ I+
Sbjct:    6 VEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLKVDGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENVDRWLKELKNHTDPNIVVMLVGNKSDLRHLLAVPTEDGKSYAEQESLCFMETSALEATNVEDAFAEVLTQIYRITSKKQVEAGEDGNASVPKGEKIE 200          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RIC2_ORYSJ (Ras-related protein RIC2 OS=Oryza sativa subsp. japonica GN=RIC2 PE=2 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 2.933e-42
Identity = 90/192 (46.88%), Postives = 127/192 (66.15%), Query Frame = 2
Query:  200 NEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPT-ANKSSGTVQMKGQPI 772
            ++YDYLFK++LIGDS VGKS LL RF  + +     STIGV+F  R++++DGK +K QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV+RWL E+  + + ++  +LV NK DL     V T   KAFA+   + F+ETSA ++ NVE AF  +  +I + +  +   A   +G+   KG+ I
Sbjct:    9 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLQVDGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLKELRDHTDPNIVVMLVGNKSDLRHLVAVQTDEGKAFAERESLYFMETSALESTNVENAFAEVLTQIYRIVSKRSVEAGDDAGSGPGKGEKI 200          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RB11D_LOTJA (Ras-related protein Rab11D OS=Lotus japonicus GN=RAB11D PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 3.831e-42
Identity = 93/194 (47.94%), Postives = 123/194 (63.40%), Query Frame = 2
Query:  200 NEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAF---LTMAGEIKKKMGNQPTANKSSGTVQMKGQPI 772
            +EYDYLFKL+LIGDS VGKS LL RF  + +     STIGV+F  +T+ +D K +K QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F N  RWL E+  + + ++  +L+ NK DL     V T+  K+FA+   + F+ETSA +A NVE AF   LT    I  K   +   + SS  +  KGQ I
Sbjct:    8 DEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTLNVDAKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENAARWLKELRDHTDPNIVVMLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLTQIYRIVSKRAVEAGDSGSSSGLPSKGQTI 201          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAA1C_ARATH (Ras-related protein RABA1c OS=Arabidopsis thaliana GN=RABA1C PE=1 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 5.003e-42
Identity = 92/192 (47.92%), Postives = 124/192 (64.58%), Query Frame = 2
Query:  200 NEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQP-TANKSSGTVQMKGQPI 772
            +EYDYLFK++LIGDS VGKS LL RF  + +     STIGV+F  R++ +D K IK QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV+ WL E+  + + ++  +LV NK DL     V T+ AK+FA++  + F+ETSA +A NVE AF  +  +I   +  +   A   S  V  KG  I
Sbjct:    8 DEYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDDKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVETWLKELRNHTDPNIVVMLVGNKSDLRHLVAVQTEDAKSFAEKESLYFMETSALEATNVENAFAEVLTQIHHIVSKKAMEAASESANVPSKGDKI 199          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RB11A_DICDI (Ras-related protein Rab-11A OS=Dictyostelium discoideum GN=rab11A PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 6.534e-42
Identity = 93/214 (43.46%), Postives = 135/214 (63.08%), Query Frame = 2
Query:  179 LPSKIMSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM-------GNQPTANKSSGTVQM--KGQPIQQNSNCC 793
            + SK    EYDYL+K++LIGDS VGKS LL RF  + +     STIGV+F  RT++ +GKTIK Q+WDTAGQER+R ITS+YYRGA G ++VYD+ +  ++ +V+RW+ E+   A+ ++  +LV NK DL   + V T  AK F+++  + F+ETSA D+ NVE AF  +  +I   M       G Q T + ++ T+ +    +P    S CC
Sbjct:    1 MTSKGSQEEYDYLYKIVLIGDSGVGKSNLLSRFTRNEFSLETKSTIGVEFATRTIQTEGKTIKAQVWDTAGQERYRAITSAYYRGAVGALLVYDIAKQATYKSVERWILELRENADRNIEIMLVGNKSDLRHLREVSTDEAKEFSEKHKLTFIETSALDSSNVELAFQNILTQIYHIMSRPSHSTGPQTTIDSNTETIILPTTSEPPAAKSGCC 214          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB2B_DICDI (Ras-related protein Rab-2B OS=Dictyostelium discoideum GN=rab2B PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 6.534e-42
Identity = 84/183 (45.90%), Postives = 124/183 (67.76%), Query Frame = 2
Query:  197 SNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSG 745
            S  Y++LFK +++GDS+VGKS LLL+F D  +  +   TIGV+F  R++ ++ K IKLQIWDTAGQE+FR+IT +YYRGA   +IVYD+T  +SF ++  WL +  ++++  V  +L+ NK DL  N+ V T  AK FA++ G+ F ETSAK A+NV++AF     +I KK+ + P    + G
Sbjct:   18 STSYEHLFKYIMVGDSAVGKSNLLLQFVDKRFAPNSDFTIGVEFGSRSININDKQIKLQIWDTAGQEKFRSITRAYYRGAVCAMIVYDITRRDSFESLNSWLTDCRKFSSCDVTTVLIGNKADLEANRQVSTSEAKEFAEKNGLMFFETSAKTALNVDEAFEKSTEQILKKLESNPGLLSNEG 200          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB19_RAT (Ras-related protein Rab-19 OS=Rattus norvegicus GN=Rab19 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 6.534e-42
Identity = 81/173 (46.82%), Postives = 122/173 (70.52%), Query Frame = 2
Query:  185 SKIMSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELG-IPFLETSAKDAINVEQAFLTMAGEI 700
            ++ +    DYLFK++LIGDS+VGK+C++  F    Y +S  +TIGVDF +R++E+DGK +K+Q+WDTAGQERFRTIT SYYR AH  II YD+T   +F +V  W++EI++Y   ++  +L+ NK DL E + V  + A   A++ G +  LETSAK++ N+++ F+ MA E+
Sbjct:    7 ARTVDENVDYLFKVILIGDSNVGKTCVVQHFKSGVYSESQQNTIGVDFTVRSLEIDGKKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNKSDLWEKRHVLFEDACTLAEKYGLLAVLETSAKESRNIDEVFVLMAKEL 179          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: ARA4_ARATH (Ras-related protein ARA-4 OS=Arabidopsis thaliana GN=ARA-4 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 6.534e-42
Identity = 80/164 (48.78%), Postives = 121/164 (73.78%), Query Frame = 2
Query:  209 DYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEI 700
            +YLFK+++IGDS+VGKS LL R+A + +  +  +TIGV+F+ +++ +DGK +K QIWDTAGQERFR +TS+YYRGA G ++VYD+T   +F NV RWL+E++ +++ +V K+L+ NKCDL   + V  +  K+ A+  G+ F+ETSA D+ NV+ AF  +  EI
Sbjct:   10 EYLFKIVIIGDSAVGKSNLLTRYARNEFNPNSKATIGVEFQTQSMLIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRSSTFENVGRWLDELNTHSDTTVAKMLIGNKCDLESIRAVSVEEGKSLAESEGLFFMETSALDSTNVKTAFEMVIREI 173          
The following BLAST results are available for this feature:
BLAST of DY258242 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB11E_LOTJA1.317e-4247.24Ras-related protein Rab11E OS=Lotus japonicus GN=R... [more]
RAB12_HUMAN1.317e-4246.70Putative Ras-related protein Rab-12 OS=Homo sapien... [more]
RAA1B_ARATH1.317e-4245.64Ras-related protein RABA1b OS=Arabidopsis thaliana... [more]
RIC2_ORYSJ2.933e-4246.88Ras-related protein RIC2 OS=Oryza sativa subsp. ja... [more]
RB11D_LOTJA3.831e-4247.94Ras-related protein Rab11D OS=Lotus japonicus GN=R... [more]
RAA1C_ARATH5.003e-4247.92Ras-related protein RABA1c OS=Arabidopsis thaliana... [more]
RB11A_DICDI6.534e-4243.46Ras-related protein Rab-11A OS=Dictyostelium disco... [more]
RAB2B_DICDI6.534e-4245.90Ras-related protein Rab-2B OS=Dictyostelium discoi... [more]
RAB19_RAT6.534e-4246.82Ras-related protein Rab-19 OS=Rattus norvegicus GN... [more]
ARA4_ARATH6.534e-4248.78Ras-related protein ARA-4 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3DB07ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258242 ID=DY258242; Name=DY258242; organism=Citrus clementina; type=EST; length=930bp
GAATGAATGTCGTAAACAGTAATTAAATAATAGCAATAATGAGTGGACAA
AGCTAAGTTCGAGAGGTGAGATAGAAAATTCTCCCGCACGACACAGCGCA
AACAAACTTTCCCTTTCATTTTCTTTTTCTCTTTCTCGCTCTCCAAACAG
GGCAAACGGACCGTCGCAAGATTCTTTACTTCCATCCAAAATCATGAGCA
ACGAATACGACTATCTGTTCAAGCTGTTGCTTATCGGAGACTCGTCCGTC
GGGAAGTCCTGCCTGCTGCTCCGATTTGCTGATGATTCTTATGTCGACAG
CTACATCAGTACCATTGGAGTTGATTTTAAAATAAGAACTGTGGAGCTGG
ATGGGAAGACGATCAAACTGCAGATTTGGGACACTGCTGGACAGGAGCGA
TTCAGGACTATAACTAGCAGTTATTACCGAGGAGCCCATGGAATCATAAT
TGTCTATGACGTAACTGAGATGGAGAGCTTCAATAATGTCAAGCGGTGGT
TGAATGAGATTGACAGATACGCAAATGACAGTGTATGCAAGCTTCTAGTT
TGGAACAAATGCGATTTAGTTGAGAACAAGGTTGTGGACACACAGACAGC
CAAGGCATTTGCAGATGAACTGGGGATTCCTTTCCTGGAGACGAGCGCCA
AAGATGCAATCAATGTGGAGCAGGCTTTCTTGACCATGGCTGGCGAGATT
AAGAAAAAAATGGGCAACCAGCCTACTGCAAACAAATCTTCTGGAACAGT
TCAGATGAAGGGACAGCCAATCCAGCAAAACAGCAACTGCTGTGGTTAGC
CGAGCATGTTATTTTACTACTACATATTAGCTGACTGATTGTAGACAGTT
TTAACGATGTTGACTGCATTATCTTATGAATCTTTTAATCTGTCAAATAT
TTATTTCCTGGTTTAAGTTCTTTCCCCGTT
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