DY258242

Overview
NameDY258242
Unique NameDY258242
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length930
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: YPT32_YEAST (GTP-binding protein YPT32/YPT11 OS=Saccharomyces cerevisiae GN=YPT32 PE=1 SV=3)

HSP 1 Score: 171.014 bits (432), Expect = 8.533e-42
Identity = 101/222 (45.50%), Postives = 131/222 (59.01%), Query Frame = 2
Query:  194 MSNE-----YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGTVQM------KGQPI-----------QQNSNCC 793
            MSNE     YDYLFK++LIGDS VGKS LL RF  D +     STIGV+F  RT+E++ K IK QIWDTAGQER+R ITS+YYRGA G +IVYD+++  S+ N   WL E+   A+D+V   L+ NK DL   + V T  AK FA E  + F ETSA ++ NV++AF  +   I + +         SGT  M      KG  I           +++SNCC
Sbjct:    1 MSNEDYGYDYDYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDLAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAIFQMVSKHQVDLSGSGTNNMGSNGAPKGPTISLTPAPKEDKKKKSSNCC 222          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB19_MOUSE (Ras-related protein Rab-19 OS=Mus musculus GN=Rab19 PE=2 SV=3)

HSP 1 Score: 171.014 bits (432), Expect = 8.533e-42
Identity = 82/173 (47.40%), Postives = 121/173 (69.94%), Query Frame = 2
Query:  185 SKIMSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELG-IPFLETSAKDAINVEQAFLTMAGEI 700
            S+      DYLFK++LIGDS+VGK+C++  F    Y +S  +TIGVDF +R++E+DGK +K+Q+WDTAGQERFRTIT SYYR AH  II YD+T   +F +V  W++EI++Y   ++  +L+ NK DL E + V  + A   A++ G +  LETSAK++ N+++ F+ MA E+
Sbjct:    7 SRTSDENVDYLFKVILIGDSNVGKTCVVQHFKSGVYSESQQNTIGVDFTVRSLEIDGKKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNKSDLWEKRHVLFEDACTLAEKHGLLAVLETSAKESRNIDEVFVLMAKEL 179          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB19_XENLA (Ras-related protein Rab-19 OS=Xenopus laevis GN=rab19 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.456e-41
Identity = 80/166 (48.19%), Postives = 120/166 (72.29%), Query Frame = 2
Query:  206 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELG-IPFLETSAKDAINVEQAFLTMAGEI 700
            +D+LFK++LIGDS+VGK+C++ RF    ++D+  +TIGVDF +R++ ++GK +K+Q+WDTAGQERFRTIT SYYR AHG II YD+T  +SF +V  W+ E  +Y   ++  +L+ NK DL E + +  + A   A++ G +  LETSAK++ NV++ FL MA E+
Sbjct:   12 FDFLFKIILIGDSNVGKTCVVHRFQSGIFMDNQQNTIGVDFTVRSLNINGKKVKVQVWDTAGQERFRTITQSYYRSAHGAIIAYDITRRQSFESVPHWIYEAGKYGAANLMLMLMGNKSDLAEKRQILFEEACTLAEKHGLLAVLETSAKESHNVDEVFLLMAKEL 177          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: ARA1_ARATH (Ras-related protein ARA-1 OS=Arabidopsis thaliana GN=ARA-1 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.456e-41
Identity = 83/177 (46.89%), Postives = 126/177 (71.19%), Query Frame = 2
Query:  209 DYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAF----LTMAGEIKKKMGNQPT 727
            +YLFK+++IGDS+VGKS LL R+A + +  +  +TIGV+F+ +++E++GK +K QIWDTAGQERFR +TS+YYRGA G ++VYD+T   +F +V RWL+E+  +++ +V ++LV NKCDL   + V  +  KA A+E G+ F+ETSA D+ NV+ AF    L +   + +K  N  T
Sbjct:   10 EYLFKIVVIGDSAVGKSNLLSRYARNEFSANSKATIGVEFQTQSMEIEGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRTTFESVGRWLDELKIHSDTTVARMLVGNKCDLENIRAVSVEEGKALAEEEGLFFVETSALDSTNVKTAFEMVILDIYNNVSRKQLNSDT 186          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: YPT31_YEAST (GTP-binding protein YPT31/YPT8 OS=Saccharomyces cerevisiae GN=YPT31 PE=1 SV=3)

HSP 1 Score: 169.474 bits (428), Expect = 2.483e-41
Identity = 95/215 (44.19%), Postives = 132/215 (61.40%), Query Frame = 2
Query:  203 EYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM-------------GNQPTANKSSG-TVQMKGQPIQ----QNSNCC 793
            +YD LFK++LIGDS VGKS LL RF  + +     STIGV+F  RT+E+DGK IK QIWDTAGQER+R ITS+YYRGA G +IVYD+++  S+ N   WL+E+   A+D+V   L+ NK DL   + V T+ +K FA E  + F ETSA ++ NV++AF  +   I +K+             GN   A+  +G T+ +   P +      +NCC
Sbjct:    9 DYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIDGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDLGDSSANGNANGASAPNGPTISLTPTPNENKKANGNNCC 223          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB19_XENTR (Ras-related protein Rab-19 OS=Xenopus tropicalis GN=rab19 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.483e-41
Identity = 79/173 (45.66%), Postives = 121/173 (69.94%), Query Frame = 2
Query:  185 SKIMSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELG-IPFLETSAKDAINVEQAFLTMAGEI 700
            + +  + +D+LFK++LIGDS+VGK+C++ RF    +  +  +TIGVDF +R + ++GK +K+Q+WDTAGQERFRTIT SYYR AHG II YD+T  +SF +V  W+ E ++Y   ++  +L+ NK DL E + +  + A   A++ G +  LETSAK++ NV++ FL MA E+
Sbjct:    5 NSLEDDPFDFLFKIILIGDSNVGKTCVVHRFQSGVFAHNQQNTIGVDFTVRNMNINGKKVKVQVWDTAGQERFRTITQSYYRSAHGAIIAYDITRRQSFESVPHWIYEAEKYGAANLMMMLIGNKSDLAEKRQILFEEACTLAEKHGLLAVLETSAKESHNVDEVFLLMAKEL 177          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RB11C_DICDI (Ras-related protein Rab-11C OS=Dictyostelium discoideum GN=rab11C PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 3.243e-41
Identity = 85/166 (51.20%), Postives = 115/166 (69.28%), Query Frame = 2
Query:  203 EYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEI 700
            E +YLFK+++IGDS+VGKS LL RF  + + +   +TIGVDF  +++E+D KTI  Q WDTAGQERFR +TS YYRGA G +IVYD+T   SF NV RWLNE+   A   +  ++V NK DL  ++ V T+ A+AFA+   I FLETSA ++ NV Q+F  +  +I
Sbjct:    6 EAEYLFKIVIIGDSAVGKSNLLNRFTRNEFTEKTKATIGVDFGTKSIEIDNKTITAQCWDTAGQERFRAVTSGYYRGAVGAMIVYDITSKISFKNVTRWLNELREMAEQDILIMMVGNKSDLEMSREVPTKEAQAFAESNKISFLETSALNSTNVNQSFERLLTDI 171          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: YPT3_NICPL (Ras-related protein YPT3 OS=Nicotiana plumbaginifolia GN=YPT3 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 5.531e-41
Identity = 91/194 (46.91%), Postives = 122/194 (62.89%), Query Frame = 2
Query:  200 NEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAF---LTMAGEIKKKMGNQPTANKSSGTVQMKGQPI 772
            +EYDYLFKL+LIGDS VGKS LL RF  + +     STIGV+F  +++ +D K IK QIWDTAGQER+R ITS+YYRGA G ++VYDVT   ++ NV RWL E+  + + ++  +L+ NK DL     V T  AK  A+  G+ F+ETSA +A NVE AF   LT    I  K   +     ++ +   KG+ I
Sbjct:    8 DEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKSLNIDNKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTYENVTRWLKELRDHTDPNIVVMLIGNKSDLRHLVAVSTDEAKGLAEREGLYFMETSALEATNVENAFTEALTQIYRIVSKKAVEAGDEGATSSAPPKGETI 201          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RABC_DICDI (Ras-related protein RabC OS=Dictyostelium discoideum GN=rabC PE=2 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 3.585e-40
Identity = 79/199 (39.70%), Postives = 125/199 (62.81%), Query Frame = 2
Query:  203 EYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTV--ELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGTVQMKGQPIQQNSNCC 793
            E + L+K++L+G+S VGKS +L+RF D+++   +  T+GVDF ++T+  +  G+T+KLQ+WDTAGQERF++IT ++YRG+HG+I+VYDVT+ +SF   K W+ +I++Y  D +  +LV NK D+V  + V  +  +  A++L   FLE SAK+   V Q F  +  +I+  M N   A             + Q   CC
Sbjct:    2 EEEILYKIILVGESGVGKSSILVRFTDNTFSQHFAPTLGVDFNVKTIRNKETGQTVKLQLWDTAGQERFKSITQTFYRGSHGVIVVYDVTDPKSFERCKNWVEDINQYTQDGMIIILVGNKSDMVAQRKVTFEQGQEMAEQLKTKFLEVSAKENNGVTQVFDLLVQDIEATMKNSKVAQNQLNL----NSEVGQKRGCC 196          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: YPTV3_VOLCA (GTP-binding protein yptV3 OS=Volvox carteri GN=YPTV3 PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 6.116e-40
Identity = 91/202 (45.05%), Postives = 128/202 (63.37%), Query Frame = 2
Query:  200 NEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVK-RWLNEIDRYAN-DSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSS--GTVQMKGQPIQQNSNCC 793
            + +DY FK+LL+GDS VGKSC+L RF    + +S  STIGVDFK++ +  DGK  KL IWDTAGQERFRT+TSSYYRGA GII VYDVT  ++F +++  W+ E D Y+  +S  K++V NK DL   + V ++    FA   G  F+ETSA+  + V QAF     E+  K+ + P   +++  G +++   P  Q +  C
Sbjct:    4 DSHDYTFKVLLVGDSGVGKSCILTRFTSGIFEESTTSTIGVDFKVKYLTADGKRCKLTIWDTAGQERFRTLTSSYYRGAQGIIFVYDVTRRDTFESLEANWMREFDIYSTVESAIKMVVANKVDLSAQRQVSSEEGHDFARRHGCLFVETSARANLAVGQAF----EELLLKILDTPLLLETTAVGGIKLGAVPTGQQAGVC 201          
The following BLAST results are available for this feature:
BLAST of DY258242 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
YPT32_YEAST8.533e-4245.50GTP-binding protein YPT32/YPT11 OS=Saccharomyces c... [more]
RAB19_MOUSE8.533e-4247.40Ras-related protein Rab-19 OS=Mus musculus GN=Rab1... [more]
RAB19_XENLA1.456e-4148.19Ras-related protein Rab-19 OS=Xenopus laevis GN=ra... [more]
ARA1_ARATH1.456e-4146.89Ras-related protein ARA-1 OS=Arabidopsis thaliana ... [more]
YPT31_YEAST2.483e-4144.19GTP-binding protein YPT31/YPT8 OS=Saccharomyces ce... [more]
RAB19_XENTR2.483e-4145.66Ras-related protein Rab-19 OS=Xenopus tropicalis G... [more]
RB11C_DICDI3.243e-4151.20Ras-related protein Rab-11C OS=Dictyostelium disco... [more]
YPT3_NICPL5.531e-4146.91Ras-related protein YPT3 OS=Nicotiana plumbaginifo... [more]
RABC_DICDI3.585e-4039.70Ras-related protein RabC OS=Dictyostelium discoide... [more]
YPTV3_VOLCA6.116e-4045.05GTP-binding protein yptV3 OS=Volvox carteri GN=YPT... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3DB07ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258242 ID=DY258242; Name=DY258242; organism=Citrus clementina; type=EST; length=930bp
GAATGAATGTCGTAAACAGTAATTAAATAATAGCAATAATGAGTGGACAA
AGCTAAGTTCGAGAGGTGAGATAGAAAATTCTCCCGCACGACACAGCGCA
AACAAACTTTCCCTTTCATTTTCTTTTTCTCTTTCTCGCTCTCCAAACAG
GGCAAACGGACCGTCGCAAGATTCTTTACTTCCATCCAAAATCATGAGCA
ACGAATACGACTATCTGTTCAAGCTGTTGCTTATCGGAGACTCGTCCGTC
GGGAAGTCCTGCCTGCTGCTCCGATTTGCTGATGATTCTTATGTCGACAG
CTACATCAGTACCATTGGAGTTGATTTTAAAATAAGAACTGTGGAGCTGG
ATGGGAAGACGATCAAACTGCAGATTTGGGACACTGCTGGACAGGAGCGA
TTCAGGACTATAACTAGCAGTTATTACCGAGGAGCCCATGGAATCATAAT
TGTCTATGACGTAACTGAGATGGAGAGCTTCAATAATGTCAAGCGGTGGT
TGAATGAGATTGACAGATACGCAAATGACAGTGTATGCAAGCTTCTAGTT
TGGAACAAATGCGATTTAGTTGAGAACAAGGTTGTGGACACACAGACAGC
CAAGGCATTTGCAGATGAACTGGGGATTCCTTTCCTGGAGACGAGCGCCA
AAGATGCAATCAATGTGGAGCAGGCTTTCTTGACCATGGCTGGCGAGATT
AAGAAAAAAATGGGCAACCAGCCTACTGCAAACAAATCTTCTGGAACAGT
TCAGATGAAGGGACAGCCAATCCAGCAAAACAGCAACTGCTGTGGTTAGC
CGAGCATGTTATTTTACTACTACATATTAGCTGACTGATTGTAGACAGTT
TTAACGATGTTGACTGCATTATCTTATGAATCTTTTAATCTGTCAAATAT
TTATTTCCTGGTTTAAGTTCTTTCCCCGTT
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