DY258242

Overview
NameDY258242
Unique NameDY258242
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length930
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB1B_MACFA (Ras-related protein Rab-1B OS=Macaca fascicularis GN=RAB1B PE=2 SV=1)

HSP 1 Score: 290.041 bits (741), Expect = 1.260e-77
Identity = 145/201 (72.14%), Postives = 165/201 (82.09%), Query Frame = 2
Query:  194 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGTVQMKGQPIQ-QNSNCC 793
            M+ EYDYLFKLLLIGDS VGKSCLLLRFADD+Y +SYISTIGVDFKIRT+ELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII+VYDVT+ ES+ NVK+WL EIDRYA+++V KLLV NK DL   KVVD  TAK FAD LGIPFLETSAK+A NVEQAF+TMA EIKK+MG    +      +++   P++     CC
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDRESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGERPNLKIDSTPVKPAGGGCC 201          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB1B_PIG (Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B PE=2 SV=1)

HSP 1 Score: 289.271 bits (739), Expect = 2.150e-77
Identity = 145/201 (72.14%), Postives = 165/201 (82.09%), Query Frame = 2
Query:  194 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGTVQMKGQPIQQ-NSNCC 793
            M+ EYDYLFKLLLIGDS VGKSCLLLRFADD+Y +SYISTIGVDFKIRT+ELDGKTIKLQIWDTAGQER RTITSSYYRGAHGII+VYDVT+ ES+ NVK+WL EIDRYA+++V KLLV NK DL   KVVD  TAK FAD LGIPFLETSAK+A NVEQAF+TMA EIKK+MG    +      +++   P++Q    CC
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERGRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGERPNLKIDSTPVKQAGGGCC 201          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: YPT1_SCHPO (GTP-binding protein ypt1 OS=Schizosaccharomyces pombe GN=ypt1 PE=1 SV=2)

HSP 1 Score: 288.886 bits (738), Expect = 2.808e-77
Identity = 147/203 (72.41%), Postives = 167/203 (82.27%), Query Frame = 2
Query:  194 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTAN---KSSGTVQMKGQPIQQNSNCC 793
            M+ EYDYLFKLLLIGDS VGKSCLLLRFADD+Y +SYISTIGVDFKIRT EL+GKT+KLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT+ +SFNNVK+WL EIDRYA + V +LLV NK D+V+ KVV+   AK FAD L IPFLETSAKD+ NVEQAFLTM+ +IK++MGN   A+   KSS  V       Q +SNCC
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYAVEGVNRLLVGNKSDMVDKKVVEYSVAKEFADSLNIPFLETSAKDSTNVEQAFLTMSRQIKERMGNNTFASSNAKSSVKVGQGTNVSQSSSNCC 203          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: YPT1_PHYIN (Ras-like GTP-binding protein YPT1 OS=Phytophthora infestans GN=YPT1 PE=3 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 2.808e-77
Identity = 147/202 (72.77%), Postives = 166/202 (82.18%), Query Frame = 2
Query:  194 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGTVQMKGQPIQQN--SNCC 793
            M+ EYDYLFKLLLIGDS VGKSCLLLRFADD+Y +SYISTIGVDFKIRT+ELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII+VYDVT+ ESFNNVK+WL+EIDRYA ++V KLLV NK DL   +VV T  AK FA+ LGI FLETSAK+A NVE+AF+ MA +IKK+M N P A K +G     GQ +  N  S CC
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEIDRYACENVNKLLVGNKSDLTAKRVVSTDAAKEFAESLGIEFLETSAKNAANVEKAFMMMAAQIKKRMANAPVAPK-AGVKLTPGQQVPSNGGSKCC 201          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB1B_DICDI (Ras-related protein Rab-1B OS=Dictyostelium discoideum GN=rab1B PE=2 SV=2)

HSP 1 Score: 282.337 bits (721), Expect = 2.628e-75
Identity = 143/203 (70.44%), Postives = 162/203 (79.80%), Query Frame = 2
Query:  194 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGN-QPTANKSSGTVQMKG---QPIQQNSNC 790
            M+ EYDYLFKLLLIGDS VGKSCLLLRFADD+Y +SYISTIGVDFKIRT+ LDGK IKLQIWDTAGQERFRTITSSYYRGAHGII+VYDVT+  SFNNVK+W+ EI RYA DSV +LLV NKCDL+E K+VDT TA+ +AD +GIPFLETSAK + NVEQAF+ MA EIKK  G  QP  N +     +K     PI +   C
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTINLDGKIIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDHVSFNNVKQWMQEIQRYACDSVTRLLVGNKCDLIEKKIVDTSTAREYADSVGIPFLETSAKSSANVEQAFMIMASEIKKLQGGIQPNNNSTYNAHVVKPTGFTPIGKKKKC 203          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB1C_HUMAN (Putative Ras-related protein Rab-1C OS=Homo sapiens GN=RAB1C PE=5 SV=2)

HSP 1 Score: 274.248 bits (700), Expect = 7.157e-73
Identity = 138/201 (68.66%), Postives = 160/201 (79.60%), Query Frame = 2
Query:  194 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGTVQMKGQPIQ-QNSNCC 793
            M+  YD LFKLLLIGDS VGKSCLLLRFADD Y +SYISTIGVDFKI+T+ELDGKTIKLQIWDTAGQERF TITSSYYRGAHG ++VYDVT+ ES+ NVK+WL EIDR+A+++V KLLV NK DL   KVVD  TAK FAD LGIPFLETSAK+A NVEQAF+TMA EIKK+MG    +      +++   P++     CC
Sbjct:    1 MNPGYDCLFKLLLIGDSGVGKSCLLLRFADDPYTESYISTIGVDFKIQTIELDGKTIKLQIWDTAGQERFWTITSSYYRGAHGFLVVYDVTDQESYANVKQWLQEIDRHASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKQMGPGAASGGERPNLKIDSTPVKPAGGGCC 201          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: YPT1_YEAST (GTP-binding protein YPT1 OS=Saccharomyces cerevisiae GN=YPT1 PE=1 SV=2)

HSP 1 Score: 273.478 bits (698), Expect = 1.221e-72
Identity = 139/205 (67.80%), Postives = 160/205 (78.05%), Query Frame = 2
Query:  194 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMG----NQPTANK-SSGTVQMKGQPIQQNSNCC 793
            M++EYDYLFKLLLIG+S VGKSCLLLRF+DD+Y + YISTIGVDFKI+TVELDGKT+KLQIWDTAGQERFRTITSSYYRG+HGIIIVYDVT+ ESFN VK WL EIDRYA  +V KLLV NKCDL + +VV+   AK FAD   +PFLETSA D+ NVE AFLTMA +IK+ M     N+ T  K   G V +KGQ +      C
Sbjct:    1 MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQKKEDKGNVNLKGQSLTNTGGGC 205          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB1A_DICDI (Ras-related protein Rab-1A OS=Dictyostelium discoideum GN=rab1A PE=2 SV=2)

HSP 1 Score: 273.092 bits (697), Expect = 1.594e-72
Identity = 141/202 (69.80%), Postives = 162/202 (80.20%), Query Frame = 2
Query:  194 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM-GNQPTAN-KSSGTVQMKGQPIQQNSNCC 793
            M+ +Y YLFKLLLIGDS VGKSCLLLRFADD+Y +S+ISTIGVDFKIRT+EL+GKTIKLQIWDTAGQERFRTITSSYYRGAHGII+VYDVT+  +F NV++WL EIDR+A ++V KLLV NK DLV  KVVD  TAKAFAD L IPFLETSAK + NVEQAF+TMA EIK ++  +QPT     +  V     PI   S CC
Sbjct:    1 MNPDYHYLFKLLLIGDSGVGKSCLLLRFADDTYSESFISTIGVDFKIRTIELNGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDKLTFENVRQWLQEIDRFACENVNKLLVGNKSDLVAKKVVDFNTAKAFADSLQIPFLETSAKQSTNVEQAFMTMATEIKNRLTASQPTQTVDKNKVVPGSSAPISPKSGCC 202          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB1D_DICDI (Ras-related protein Rab-1D OS=Dictyostelium discoideum GN=rab1D PE=1 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 7.665e-67
Identity = 122/175 (69.71%), Postives = 150/175 (85.71%), Query Frame = 2
Query:  194 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGN 718
            M+ E+D+ FK+LLIGDS VGKSCLLLRFADDS+ D++ISTIGVDFKI+T+ LDGKTIKLQIWDTAGQERFRTITSSYYRGA GII+VYD T+ +SF NVK+W+ EIDRYA ++V KLLV NK DLV  KVVD+  AK+FA+  GIPF+ETSAK+A NVE+ F++MA +IK ++ +
Sbjct:    3 MAPEHDFFFKILLIGDSGVGKSCLLLRFADDSWTDTHISTIGVDFKIKTLNLDGKTIKLQIWDTAGQERFRTITSSYYRGAQGIILVYDCTDQDSFTNVKQWMGEIDRYACENVNKLLVGNKTDLVNEKVVDSNQAKSFAESYGIPFIETSAKNATNVEECFISMARDIKNRLAD 177          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB8A_DICDI (Ras-related protein Rab-8A OS=Dictyostelium discoideum GN=rab8A PE=3 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 2.466e-65
Identity = 124/208 (59.62%), Postives = 162/208 (77.88%), Query Frame = 2
Query:  182 PSKIMSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGTVQMKGQPIQQNSN----CC 793
            P+   S  YDYL KLLLIGDS VGKSCLLLRF++DS+  S+I+TIG+DFKIRT+EL+GK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVT+ +SF N++ W+  I+++A DSV K+L+ NKCD+ E KVVD+   K+ ADE GI FLETSAK++INVE+AF+++A +IKK+M + P  N+    VQ  G  +  N+N    CC
Sbjct:    4 PATNKSAAYDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELEGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGNIRNWIRNIEQHATDSVNKMLIGNKCDMAEKKVVDSSRGKSLADEYGIKFLETSAKNSINVEEAFISLAKDIKKRMIDTP--NEQPQVVQ-PGTNLGANNNKKKACC 208          
The following BLAST results are available for this feature:
BLAST of DY258242 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB1B_MACFA1.260e-7772.14Ras-related protein Rab-1B OS=Macaca fascicularis ... [more]
RAB1B_PIG2.150e-7772.14Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B ... [more]
YPT1_SCHPO2.808e-7772.41GTP-binding protein ypt1 OS=Schizosaccharomyces po... [more]
YPT1_PHYIN2.808e-7772.77Ras-like GTP-binding protein YPT1 OS=Phytophthora ... [more]
RAB1B_DICDI2.628e-7570.44Ras-related protein Rab-1B OS=Dictyostelium discoi... [more]
RAB1C_HUMAN7.157e-7368.66Putative Ras-related protein Rab-1C OS=Homo sapien... [more]
YPT1_YEAST1.221e-7267.80GTP-binding protein YPT1 OS=Saccharomyces cerevisi... [more]
RAB1A_DICDI1.594e-7269.80Ras-related protein Rab-1A OS=Dictyostelium discoi... [more]
RAB1D_DICDI7.665e-6769.71Ras-related protein Rab-1D OS=Dictyostelium discoi... [more]
RAB8A_DICDI2.466e-6559.62Ras-related protein Rab-8A OS=Dictyostelium discoi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3DB07ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258242 ID=DY258242; Name=DY258242; organism=Citrus clementina; type=EST; length=930bp
GAATGAATGTCGTAAACAGTAATTAAATAATAGCAATAATGAGTGGACAA
AGCTAAGTTCGAGAGGTGAGATAGAAAATTCTCCCGCACGACACAGCGCA
AACAAACTTTCCCTTTCATTTTCTTTTTCTCTTTCTCGCTCTCCAAACAG
GGCAAACGGACCGTCGCAAGATTCTTTACTTCCATCCAAAATCATGAGCA
ACGAATACGACTATCTGTTCAAGCTGTTGCTTATCGGAGACTCGTCCGTC
GGGAAGTCCTGCCTGCTGCTCCGATTTGCTGATGATTCTTATGTCGACAG
CTACATCAGTACCATTGGAGTTGATTTTAAAATAAGAACTGTGGAGCTGG
ATGGGAAGACGATCAAACTGCAGATTTGGGACACTGCTGGACAGGAGCGA
TTCAGGACTATAACTAGCAGTTATTACCGAGGAGCCCATGGAATCATAAT
TGTCTATGACGTAACTGAGATGGAGAGCTTCAATAATGTCAAGCGGTGGT
TGAATGAGATTGACAGATACGCAAATGACAGTGTATGCAAGCTTCTAGTT
TGGAACAAATGCGATTTAGTTGAGAACAAGGTTGTGGACACACAGACAGC
CAAGGCATTTGCAGATGAACTGGGGATTCCTTTCCTGGAGACGAGCGCCA
AAGATGCAATCAATGTGGAGCAGGCTTTCTTGACCATGGCTGGCGAGATT
AAGAAAAAAATGGGCAACCAGCCTACTGCAAACAAATCTTCTGGAACAGT
TCAGATGAAGGGACAGCCAATCCAGCAAAACAGCAACTGCTGTGGTTAGC
CGAGCATGTTATTTTACTACTACATATTAGCTGACTGATTGTAGACAGTT
TTAACGATGTTGACTGCATTATCTTATGAATCTTTTAATCTGTCAAATAT
TTATTTCCTGGTTTAAGTTCTTTCCCCGTT
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