DY258242

Overview
NameDY258242
Unique NameDY258242
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length930
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10095 contig Ccv1_Contig10095:4..933. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB1C_DICDI (Ras-related protein Rab-1C OS=Dictyostelium discoideum GN=Rab1C PE=2 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 7.932e-64
Identity = 114/168 (67.86%), Postives = 143/168 (85.12%), Query Frame = 2
Query:  203 EYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 706
            EYD L K+L+IGDS VGKSC+LLRFAD+ + DSYISTIGVDF IRT+ELDGK IKLQIWDTAGQERF+TIT+SYYRGAHG+IIVYD+T M+SFN++KRWL ++DR+A+ SV KL+V NKCDL   + VD + AK FADEL IP +ETSAK++  +++AF+ +A +IKK
Sbjct:   29 EYDMLLKILVIGDSGVGKSCMLLRFADNRFTDSYISTIGVDFCIRTIELDGKKIKLQIWDTAGQERFKTITTSYYRGAHGLIIVYDITSMDSFNSIKRWLIDVDRFASPSVLKLIVGNKCDLNSKRAVDFKIAKKFADELNIPIMETSAKESTAIDEAFIKLASDIKK 196          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB8B_DICDI (Ras-related protein Rab-8B OS=Dictyostelium discoideum GN=rab8B PE=2 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 5.141e-63
Identity = 116/196 (59.18%), Postives = 156/196 (79.59%), Query Frame = 2
Query:  206 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGTVQMKGQPIQQNSNCC 793
            YD+L KLLLIGDS VGKSCLLLRF+D S+  S+I+TIG+DFKIRT+EL+GK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVT+ +SF +++ W+  I+++A+DSV K+L+ NKCD+ E KVVD+   K+ ADE GI FLETSAK+++NVE+AF+ +A +IKK+M + P  N    T+ +   P  + + CC
Sbjct:   12 YDFLVKLLLIGDSGVGKSCLLLRFSDGSFTPSFIATIGIDFKIRTIELEGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGSIRNWIRNIEQHASDSVNKMLIGNKCDMTEKKVVDSSRGKSLADEYGIKFLETSAKNSVNVEEAFIGLAKDIKKRMIDTP--NDPDHTICI--TPNNKKNTCC 203          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RB1BV_BETVU (Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB1BV PE=2 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 4.812e-61
Identity = 115/204 (56.37%), Postives = 153/204 (75.00%), Query Frame = 2
Query:  203 EYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENK-VVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGTVQMK-----GQPIQQNSNCCG 796
            +YDYL KLLLIGDS VGKSCLLLRF+D S+  S+I+TIG+DFKIRT+ELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVT+  SFNN++ W+  I+++A+D+V K+LV NK D+ E+K  V T   +A ADE GI F ETSAK  +NVE+ F ++A +IK+++ +  T  ++  ++ +K     G      S CCG
Sbjct:   11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADSDTRQEAQPSITIKPADQSGNQAAAKSACCG 214          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: ARA3_ARATH (Ras-related protein ARA-3 OS=Arabidopsis thaliana GN=ARA-3 PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 3.119e-60
Identity = 118/205 (57.56%), Postives = 152/205 (74.15%), Query Frame = 2
Query:  203 EYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENK-VVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGN-----QPTANKSSGTVQMKGQ-PIQQNSNCCG 796
            +YDYL KLLLIGDS VGKSCLLLRF+D S+  S+I+TIG+DFKIRT+ELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVT+  SFNN++ W+  I+++A+D+V K+LV NK D+ E+K  V T   +A ADE GI F ETSAK  +NVE+ F ++  +IK+++ +     +P   K S T Q  G     Q S CCG
Sbjct:   11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEEVFFSIGRDIKQRLSDTDSRAEPATIKISQTDQAAGAGQATQKSACCG 215          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: YPT2_SCHPO (GTP-binding protein ypt2 OS=Schizosaccharomyces pombe GN=ypt2 PE=2 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 2.022e-59
Identity = 105/171 (61.40%), Postives = 142/171 (83.04%), Query Frame = 2
Query:  197 SNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKK 709
            +  YDYL KLLLIGDS VGKSCLLLRF++DS+  S+I+TIG+DFKIRT+ELDGK IKLQIWDTAGQERFRTIT++YYRGA GI+++YDVT+ +SF+NV+ W + ++++A+++V K+L+ NKCD  + + V  +  +A ADELG+ FLE SAK  +NV++AF T+A EIKK+
Sbjct:    3 TKSYDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILIGNKCDCEDQRQVSFEQGQALADELGVKFLEASAKTNVNVDEAFFTLAREIKKQ 173          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RABA_DICDI (Ras-related protein RabA OS=Dictyostelium discoideum GN=rabA PE=2 SV=2)

HSP 1 Score: 222.246 bits (565), Expect = 3.228e-57
Identity = 106/199 (53.27%), Postives = 145/199 (72.86%), Query Frame = 2
Query:  194 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGTVQMKGQPIQQNSNC 790
            MS +Y++LFK + +GDS VGKS +LLRF +D++ +SYISTIGVDFKI+TV ++GK IKLQIWDTAGQERFR   +S YRG H +++VYDVT+  SF NV +W+ EI+RYA D+V K+++ NK D++  KVVD   A+ FAD L I F ETSAK AIN+E AF+++      ++     ++ SS T+ +K +P  Q SNC
Sbjct:    1 MSKKYEHLFKFIFVGDSGVGKSSILLRFTEDTFTESYISTIGVDFKIKTVYIEGKAIKLQIWDTAGQERFRVHNNSQYRGCHAVMVVYDVTDQRSFENVAKWIQEIERYARDNVIKMIIGNKSDMISQKVVDPFLAQEFADSLDITFKETSAKQAINIEDAFISLVKLCIDRIEEFKPSSTSSSTIILK-KPQSQKSNC 198          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB8_DISOM (Ras-related protein Rab-8 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 3.228e-57
Identity = 107/197 (54.31%), Postives = 145/197 (73.60%), Query Frame = 2
Query:  194 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGTVQMKGQPIQQNS 784
            M+  YDYLFKLLLIGDS VGK+CLL RF++D++  ++ISTIG+DFKIRTVELDGK IKLQIWDTAGQERFRTIT++YYRGA GI+ VYD+T  +SF+N+K W+  I+ +A+  V ++++ NKCD+ E + V  +  +  A + GI FLETSAK +INVE+AF+T+A +I  K+  +   N     V     P ++ S
Sbjct:    1 MAKTYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTVELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMKVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNEKRQVSKERGEKLAIDYGIKFLETSAKSSINVEEAFITLARDIMTKLNKKMNENSLQEAVDKLKSPPKKPS 197          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB8B_RAT (Ras-related protein Rab-8B OS=Rattus norvegicus GN=Rab8b PE=1 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 4.216e-57
Identity = 103/184 (55.98%), Postives = 142/184 (77.17%), Query Frame = 2
Query:  194 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSG 745
            M+  YDYLFKLLLIGDS VGK+CLL RF++D++  ++ISTIG+DFKIRT+ELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYD+T  +SF+N+K W+  I+ +A+  V ++++ NKCD+ + + V  +  +  A + GI FLETSAK + NVE+AF T+A +I  K+  +   + SSG
Sbjct:    1 MAKTYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDIMTKLNRKMNDSNSSG 184          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB8B_PONAB (Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8B PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 4.216e-57
Identity = 105/198 (53.03%), Postives = 147/198 (74.24%), Query Frame = 2
Query:  194 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGTVQMKGQPIQQNSN 787
            M+  YDYLFKLLLIGDS VGK+CLL RF++D++  ++ISTIG+DFKIRT+ELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYD+T  +SF+N+K W+  I+ +A+  V ++++ NKCD+ + + V  +  +  A + GI FLETSAK + NVE+AF T+A +I  K+  +   + S+G     G P++   N
Sbjct:    1 MAKTYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDIMTKLNRKMNDSNSAGA----GGPVKITEN 194          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB8B_MOUSE (Ras-related protein Rab-8B OS=Mus musculus GN=Rab8b PE=1 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 4.216e-57
Identity = 103/184 (55.98%), Postives = 142/184 (77.17%), Query Frame = 2
Query:  194 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSG 745
            M+  YDYLFKLLLIGDS VGK+CLL RF++D++  ++ISTIG+DFKIRT+ELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYD+T  +SF+N+K W+  I+ +A+  V ++++ NKCD+ + + V  +  +  A + GI FLETSAK + NVE+AF T+A +I  K+  +   + SSG
Sbjct:    1 MAKTYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDIMTKLNRKMNDSNSSG 184          
The following BLAST results are available for this feature:
BLAST of DY258242 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB1C_DICDI7.932e-6467.86Ras-related protein Rab-1C OS=Dictyostelium discoi... [more]
RAB8B_DICDI5.141e-6359.18Ras-related protein Rab-8B OS=Dictyostelium discoi... [more]
RB1BV_BETVU4.812e-6156.37Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB... [more]
ARA3_ARATH3.119e-6057.56Ras-related protein ARA-3 OS=Arabidopsis thaliana ... [more]
YPT2_SCHPO2.022e-5961.40GTP-binding protein ypt2 OS=Schizosaccharomyces po... [more]
RABA_DICDI3.228e-5753.27Ras-related protein RabA OS=Dictyostelium discoide... [more]
RAB8_DISOM3.228e-5754.31Ras-related protein Rab-8 OS=Discopyge ommata PE=2... [more]
RAB8B_RAT4.216e-5755.98Ras-related protein Rab-8B OS=Rattus norvegicus GN... [more]
RAB8B_PONAB4.216e-5753.03Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8... [more]
RAB8B_MOUSE4.216e-5755.98Ras-related protein Rab-8B OS=Mus musculus GN=Rab8... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3DB07ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258242 ID=DY258242; Name=DY258242; organism=Citrus clementina; type=EST; length=930bp
GAATGAATGTCGTAAACAGTAATTAAATAATAGCAATAATGAGTGGACAA
AGCTAAGTTCGAGAGGTGAGATAGAAAATTCTCCCGCACGACACAGCGCA
AACAAACTTTCCCTTTCATTTTCTTTTTCTCTTTCTCGCTCTCCAAACAG
GGCAAACGGACCGTCGCAAGATTCTTTACTTCCATCCAAAATCATGAGCA
ACGAATACGACTATCTGTTCAAGCTGTTGCTTATCGGAGACTCGTCCGTC
GGGAAGTCCTGCCTGCTGCTCCGATTTGCTGATGATTCTTATGTCGACAG
CTACATCAGTACCATTGGAGTTGATTTTAAAATAAGAACTGTGGAGCTGG
ATGGGAAGACGATCAAACTGCAGATTTGGGACACTGCTGGACAGGAGCGA
TTCAGGACTATAACTAGCAGTTATTACCGAGGAGCCCATGGAATCATAAT
TGTCTATGACGTAACTGAGATGGAGAGCTTCAATAATGTCAAGCGGTGGT
TGAATGAGATTGACAGATACGCAAATGACAGTGTATGCAAGCTTCTAGTT
TGGAACAAATGCGATTTAGTTGAGAACAAGGTTGTGGACACACAGACAGC
CAAGGCATTTGCAGATGAACTGGGGATTCCTTTCCTGGAGACGAGCGCCA
AAGATGCAATCAATGTGGAGCAGGCTTTCTTGACCATGGCTGGCGAGATT
AAGAAAAAAATGGGCAACCAGCCTACTGCAAACAAATCTTCTGGAACAGT
TCAGATGAAGGGACAGCCAATCCAGCAAAACAGCAACTGCTGTGGTTAGC
CGAGCATGTTATTTTACTACTACATATTAGCTGACTGATTGTAGACAGTT
TTAACGATGTTGACTGCATTATCTTATGAATCTTTTAATCTGTCAAATAT
TTATTTCCTGGTTTAAGTTCTTTCCCCGTT
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