DY258242

Overview
NameDY258242
Unique NameDY258242
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length930
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10095 contig Ccv1_Contig10095:4..933. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB8B_HUMAN (Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8B PE=1 SV=2)

HSP 1 Score: 221.861 bits (564), Expect = 4.216e-57
Identity = 105/198 (53.03%), Postives = 147/198 (74.24%), Query Frame = 2
Query:  194 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGTVQMKGQPIQQNSN 787
            M+  YDYLFKLLLIGDS VGK+CLL RF++D++  ++ISTIG+DFKIRT+ELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYD+T  +SF+N+K W+  I+ +A+  V ++++ NKCD+ + + V  +  +  A + GI FLETSAK + NVE+AF T+A +I  K+  +   + S+G     G P++   N
Sbjct:    1 MAKTYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLARDIMTKLNRKMNDSNSAGA----GGPVKITEN 194          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB8B_BOVIN (Ras-related protein Rab-8B OS=Bos taurus GN=RAB8B PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 4.216e-57
Identity = 105/198 (53.03%), Postives = 147/198 (74.24%), Query Frame = 2
Query:  194 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGTVQMKGQPIQQNSN 787
            M+  YDYLFKLLLIGDS VGK+CLL RF++D++  ++ISTIG+DFKIRT+ELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYD+T  +SF+N+K W+  I+ +A+  V ++++ NKCD+ + + V  +  +  A + GI FLE SAK ++NVE+AF T+A +I  K+  +   + SSG     G P++   N
Sbjct:    1 MAKTYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLEASAKSSMNVEEAFFTLARDIMTKLNRKMNDSNSSGA----GGPVKITEN 194          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB8A_MACFA (Ras-related protein Rab-8A OS=Macaca fascicularis GN=RAB8A PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 4.216e-57
Identity = 108/196 (55.10%), Postives = 147/196 (75.00%), Query Frame = 2
Query:  194 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGTVQ-MKGQPIQQ 778
            M+  YDYLFKLLLIGDS VGK+C+L RF++D++  ++ISTIG+DFKIRT+ELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYD+T  +SF+N++ W+  I+ +A+  V K+++ NKCD+ + + V  +  +  A + GI F+ETSAK  INVE AF T+A +IK KM  +   N   G+ Q +K  P QQ
Sbjct:    1 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQGSNQGVKITPDQQ 196          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB8A_HUMAN (Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8A PE=1 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 4.216e-57
Identity = 108/196 (55.10%), Postives = 147/196 (75.00%), Query Frame = 2
Query:  194 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGTVQ-MKGQPIQQ 778
            M+  YDYLFKLLLIGDS VGK+C+L RF++D++  ++ISTIG+DFKIRT+ELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYD+T  +SF+N++ W+  I+ +A+  V K+++ NKCD+ + + V  +  +  A + GI F+ETSAK  INVE AF T+A +IK KM  +   N   G+ Q +K  P QQ
Sbjct:    1 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQGSNQGVKITPDQQ 196          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB8A_CANFA (Ras-related protein Rab-8A OS=Canis familiaris GN=RAB8A PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 4.216e-57
Identity = 108/196 (55.10%), Postives = 147/196 (75.00%), Query Frame = 2
Query:  194 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGTVQ-MKGQPIQQ 778
            M+  YDYLFKLLLIGDS VGK+C+L RF++D++  ++ISTIG+DFKIRT+ELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYD+T  +SF+N++ W+  I+ +A+  V K+++ NKCD+ + + V  +  +  A + GI F+ETSAK  INVE AF T+A +IK KM  +   N   G+ Q +K  P QQ
Sbjct:    1 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQGSNQGVKITPDQQ 196          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB8A_BOVIN (Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A PE=2 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 5.506e-57
Identity = 108/196 (55.10%), Postives = 147/196 (75.00%), Query Frame = 2
Query:  194 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGTVQ-MKGQPIQQ 778
            M+  YDYLFKLLLIGDS VGK+C+L RF++D++  ++ISTIG+DFKIRT+ELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYD+T  +SF+N++ W+  I+ +A+  V K+++ NKCD+ + + V  +  +  A + GI F+ETSAK  INVE AF T+A +IK KM  +   N   G+ Q +K  P QQ
Sbjct:    1 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFYTLARDIKAKMDKKLEGNSPQGSNQGVKITPDQQ 196          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RYL1_YARLI (Ras-like GTP-binding protein RYL1 OS=Yarrowia lipolytica GN=RYL1 PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 9.391e-57
Identity = 104/196 (53.06%), Postives = 138/196 (70.41%), Query Frame = 2
Query:  206 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGTVQMKGQPIQQNSNCC 793
            YD L KLLLIGDS VGKSCLLLRF +D +  S+I+TIG+DFKIRT+++  + +KLQ+WDTAGQERFRTIT++YYRGA GI++VYDVT+ +SFNN++ W   +  YAN+ V  +LV NKCDL E +VV T+  +A AD+ GIPFLE S+K  INVE+ F ++A  I+  +         SG + +        S CC
Sbjct:    8 YDLLIKLLLIGDSGVGKSCLLLRFCEDQFTPSFITTIGIDFKIRTIDIGNQRVKLQVWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFNNIENWYQNVQSYANEGVELILVGNKCDLDEKRVVSTEQGQALADKFGIPFLEASSKTNINVEECFYSVATRIRDTVAKTKGNESGSGGINIAEGEENSASKCC 203          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB8A_RAT (Ras-related protein Rab-8A OS=Rattus norvegicus GN=Rab8a PE=2 SV=2)

HSP 1 Score: 219.935 bits (559), Expect = 1.602e-56
Identity = 103/185 (55.68%), Postives = 141/185 (76.22%), Query Frame = 2
Query:  194 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGT 748
            M+  YDYLFKLLLIGDS VGK+C+L RF++D++  ++ISTIG+DFKIRT+ELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYD+T  +SF+N++ W+  I+ +A+  V K+++ NKCD+ + + V  +  +  A + GI F+ETSAK  INVE AF T+A +IK KM  +   N   G+
Sbjct:    1 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQGS 185          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB8A_MOUSE (Ras-related protein Rab-8A OS=Mus musculus GN=Rab8a PE=1 SV=2)

HSP 1 Score: 219.935 bits (559), Expect = 1.602e-56
Identity = 103/185 (55.68%), Postives = 141/185 (76.22%), Query Frame = 2
Query:  194 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGT 748
            M+  YDYLFKLLLIGDS VGK+C+L RF++D++  ++ISTIG+DFKIRT+ELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYD+T  +SF+N++ W+  I+ +A+  V K+++ NKCD+ + + V  +  +  A + GI F+ETSAK  INVE AF T+A +IK KM  +   N   G+
Sbjct:    1 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQGS 185          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB1_THEPA (Ras-related protein Rab-1 OS=Theileria parva GN=rab1 PE=1 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.602e-56
Identity = 110/186 (59.14%), Postives = 143/186 (76.88%), Query Frame = 2
Query:  203 EYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNV-KRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGTVQM 757
            EYDYLFK+++IGDS  GKS LLLRFAD++Y +SY+STIGVDFKI+TV++D  TIKLQIWDTAGQERFRTITS+YYRGAHGII VYDVT   SF+++ + WL +ID+YA  +VCKLL+ NK DL E++VV    AK  A++  + ++E SAK   NVE+AF T+A  +K K+   P +N  + TV +
Sbjct:    3 EYDYLFKIIVIGDSGTGKSSLLLRFADNTYSESYMSTIGVDFKIKTVKIDNTTIKLQIWDTAGQERFRTITSTYYRGAHGIICVYDVTNKLSFDHITETWLQDIDKYATSNVCKLLIGNKIDLAESRVVSADEAKHVAEQNNMNYIEASAKTDSNVEKAFTTIAKALKDKVTQYP-SNAPASTVSL 187          
The following BLAST results are available for this feature:
BLAST of DY258242 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB8B_HUMAN4.216e-5753.03Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8... [more]
RAB8B_BOVIN4.216e-5753.03Ras-related protein Rab-8B OS=Bos taurus GN=RAB8B ... [more]
RAB8A_MACFA4.216e-5755.10Ras-related protein Rab-8A OS=Macaca fascicularis ... [more]
RAB8A_HUMAN4.216e-5755.10Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8... [more]
RAB8A_CANFA4.216e-5755.10Ras-related protein Rab-8A OS=Canis familiaris GN=... [more]
RAB8A_BOVIN5.506e-5755.10Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A ... [more]
RYL1_YARLI9.391e-5753.06Ras-like GTP-binding protein RYL1 OS=Yarrowia lipo... [more]
RAB8A_RAT1.602e-5655.68Ras-related protein Rab-8A OS=Rattus norvegicus GN... [more]
RAB8A_MOUSE1.602e-5655.68Ras-related protein Rab-8A OS=Mus musculus GN=Rab8... [more]
RAB1_THEPA1.602e-5659.14Ras-related protein Rab-1 OS=Theileria parva GN=ra... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAB3DB07ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258242 ID=DY258242; Name=DY258242; organism=Citrus clementina; type=EST; length=930bp
GAATGAATGTCGTAAACAGTAATTAAATAATAGCAATAATGAGTGGACAA
AGCTAAGTTCGAGAGGTGAGATAGAAAATTCTCCCGCACGACACAGCGCA
AACAAACTTTCCCTTTCATTTTCTTTTTCTCTTTCTCGCTCTCCAAACAG
GGCAAACGGACCGTCGCAAGATTCTTTACTTCCATCCAAAATCATGAGCA
ACGAATACGACTATCTGTTCAAGCTGTTGCTTATCGGAGACTCGTCCGTC
GGGAAGTCCTGCCTGCTGCTCCGATTTGCTGATGATTCTTATGTCGACAG
CTACATCAGTACCATTGGAGTTGATTTTAAAATAAGAACTGTGGAGCTGG
ATGGGAAGACGATCAAACTGCAGATTTGGGACACTGCTGGACAGGAGCGA
TTCAGGACTATAACTAGCAGTTATTACCGAGGAGCCCATGGAATCATAAT
TGTCTATGACGTAACTGAGATGGAGAGCTTCAATAATGTCAAGCGGTGGT
TGAATGAGATTGACAGATACGCAAATGACAGTGTATGCAAGCTTCTAGTT
TGGAACAAATGCGATTTAGTTGAGAACAAGGTTGTGGACACACAGACAGC
CAAGGCATTTGCAGATGAACTGGGGATTCCTTTCCTGGAGACGAGCGCCA
AAGATGCAATCAATGTGGAGCAGGCTTTCTTGACCATGGCTGGCGAGATT
AAGAAAAAAATGGGCAACCAGCCTACTGCAAACAAATCTTCTGGAACAGT
TCAGATGAAGGGACAGCCAATCCAGCAAAACAGCAACTGCTGTGGTTAGC
CGAGCATGTTATTTTACTACTACATATTAGCTGACTGATTGTAGACAGTT
TTAACGATGTTGACTGCATTATCTTATGAATCTTTTAATCTGTCAAATAT
TTATTTCCTGGTTTAAGTTCTTTCCCCGTT
back to top