DY258242

Overview
NameDY258242
Unique NameDY258242
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length930
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RASN_MOUSE (GTPase NRas OS=Mus musculus GN=Nras PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 8.024e-24
Identity = 63/164 (38.41%), Postives = 94/164 (57.32%), Query Frame = 2
Query:  218 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYAN-DSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 706
            +KL+++G   VGKS L ++   + +VD Y  TI   ++ + V +DG+T  L I DTAGQE +  +   Y R   G + V+ +   +SF ++  +  +I R  + D V  +LV NKCDL   + VDT+ A   A   GIPF+ETSAK    VE AF T+  EI++
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL-PTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQ 165          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RASN_MONDO (GTPase NRas OS=Monodelphis domestica GN=NRAS PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 8.024e-24
Identity = 63/164 (38.41%), Postives = 94/164 (57.32%), Query Frame = 2
Query:  218 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYAN-DSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 706
            +KL+++G   VGKS L ++   + +VD Y  TI   ++ + V +DG+T  L I DTAGQE +  +   Y R   G + V+ +   +SF ++  +  +I R  + D V  +LV NKCDL   + VDT+ A   A   GIPF+ETSAK    VE AF T+  EI++
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL-PTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQ 165          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RASN_HUMAN (GTPase NRas OS=Homo sapiens GN=NRAS PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 8.024e-24
Identity = 63/164 (38.41%), Postives = 94/164 (57.32%), Query Frame = 2
Query:  218 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYAN-DSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 706
            +KL+++G   VGKS L ++   + +VD Y  TI   ++ + V +DG+T  L I DTAGQE +  +   Y R   G + V+ +   +SF ++  +  +I R  + D V  +LV NKCDL   + VDT+ A   A   GIPF+ETSAK    VE AF T+  EI++
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL-PTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQ 165          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB36_HUMAN (Ras-related protein Rab-36 OS=Homo sapiens GN=RAB36 PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 8.024e-24
Identity = 69/196 (35.20%), Postives = 106/196 (54.08%), Query Frame = 2
Query:  215 LFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKL-LVWNKCDLVENKVVDTQTAKA--FADELGIPFLETSAKDAINVEQAFLTMAG-----EIKKKMGNQPTANKSSGT---VQMKGQP 769
            L K++++GD  VGK+ L+ RF  + +   Y +TIGVDF+I   E+ G    LQIWDTAGQE+F+ I S+YYRGA  II  +D+T++++  + ++WL +  R      C + LV  K DL+     +   A A   A E+   +   SAK   NV+  F  +A       + + +  Q +A    G    +QM+G P
Sbjct:  123 LSKVVVVGDLYVGKTSLIHRFCKNVFDRDYKATIGVDFEIERFEIAGIPYSLQIWDTAGQEKFKCIASAYYRGAQVIITAFDLTDVQTLEHTRQWLEDALRENEAGSCFIFLVGTKKDLLSGAACEQAEADAVHLAREMQAEYWSVSAKTGENVKAFFSRVAALAFEQSVLQDLERQSSARLQVGNGDLIQMEGSP 318          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RASL_COLTR (Ras-like protein OS=Colletotrichum trifolii GN=RAS PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.048e-23
Identity = 67/209 (32.06%), Postives = 108/209 (51.67%), Query Frame = 2
Query:  194 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYAN-DSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK-KMGNQPTANKSSGTVQMKGQPI-------QQNSNCC 793
            M++++   +KL+++G   VGKSCL ++     +VD Y  TI   ++ + V +D +   L + DTAGQE +  +   Y R   G ++VY +T  +SF  +  +  +I R  + D    ++V NKCDL   + V  Q  +A A   G  F+ETSAK  INV++AF  +  EI++     Q  +  S G   + G P        +Q + CC
Sbjct:    1 MASKFLREYKLVVVGGGGVGKSCLTIQLIQSHFVDEYDPTIEDSYRKQCV-IDEEVALLDVLDTAGQEEYSAMREQYMRTGEGFLLVYSITSRQSFEEITTFQQQILRVKDKDYFPMVVVGNKCDLEGEREVTRQEGEALAKSFGCKFIETSAKSRINVDKAFYDIVREIRRYNREMQGYSTGSGGASGINGPPKPMDVENGEQEAGCC 208          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RASK_CYPCA (GTPase KRas OS=Cyprinus carpio GN=kras PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.048e-23
Identity = 62/164 (37.80%), Postives = 96/164 (58.54%), Query Frame = 2
Query:  218 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYAN-DSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 706
            +KL+++G   VGKS L ++   + +VD Y  TI   ++ + V +DG+T  L I DTAGQE +  +   Y R   G + V+ +   +SF ++  +  +I R  + + V  +LV NKCDL  ++ VDT+ A+  A   GIPF+ETSAK    V+ AF T+  EI+K
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL-PSRSVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRK 165          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAS1_PHYPO (Ras-like protein 1 OS=Physarum polycephalum GN=RAS1 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.048e-23
Identity = 59/164 (35.98%), Postives = 92/164 (56.10%), Query Frame = 2
Query:  218 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYAN-DSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 706
            +KL+++G   VGKS L ++   + ++D Y  TI   ++ + V +D +T  L I DTAGQE +  +   Y R   G + VY +T   SF+ +  +  +I R  + D V  ++V NKCDL   + V T   +  A   G PF+ETSAK  +NVE++F  +  EI+K
Sbjct:    4 YKLVIVGGGGVGKSALTIQLIQNHFIDEYDPTIEDSYR-KQVTIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFDEIASFREQILRVKDKDKVPMIVVGNKCDLEGERQVTTGEGQDLARSFGCPFMETSAKSRVNVEESFYQLVREIRK 166          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAS_CARAU (Ras-like protein (Fragment) OS=Carassius auratus PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.369e-23
Identity = 62/164 (37.80%), Postives = 96/164 (58.54%), Query Frame = 2
Query:  218 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYAN-DSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 706
            +KL+++G   VGKS L ++   + +VD Y  TI   ++ + V +DG+T  L I DTAGQE +  +   Y R   G + V+ +   +SF ++  +  +I R  + + V  +LV NKCDL  ++ VDT+ A+  A   GIPF+ETSAK    VE AF T+  EI++
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL-PSRSVDTKQAQDLARSYGIPFIETSAKTRQRVEDAFYTLVREIRQ 165          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAS1_DROVI (Ras-like protein 1 OS=Drosophila virilis GN=Ras85D PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.369e-23
Identity = 62/169 (36.69%), Postives = 98/169 (57.99%), Query Frame = 2
Query:  218 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYAN-DSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQ 721
            +KL+++G   VGKS L ++   + +VD Y  TI   ++ + V +DG+T  L I DTAGQE +  +   Y R   G ++V+ V   +SF ++  +  +I R  + + V  +LV NKCDL    V + Q A+  A + GIP++ETSAK  + V+ AF T+  EI+K   N+
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKDAEEVPMVLVGNKCDLASWNVQNEQ-AREVAKQYGIPYIETSAKTRMGVDDAFYTLVREIRKDKDNK 170          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB34_RAT (Ras-related protein Rab-34 OS=Rattus norvegicus GN=Rab34 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.369e-23
Identity = 62/161 (38.51%), Postives = 98/161 (60.87%), Query Frame = 2
Query:  221 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDS-VCKLLVWNKCDL---VENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMA 691
            K++++GD SVGK+CL+ RF  D++  +Y +TIGVDF++   E+ G    LQ+WDTAGQERF+ I S+YYRGA  IIIV+++ ++ S  + K+WL +  +  + S V   LV +K DL    +  +++    K  A E+   +   S+    NV + F  +A
Sbjct:   54 KVIVVGDLSVGKTCLINRFCKDTFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFNLNDVASLEHSKQWLADALKENDPSNVLLFLVGSKKDLSTPAQYSLMEKDALKV-AQEIKAEYWSVSSLTGENVREFFFRVA 213          
The following BLAST results are available for this feature:
BLAST of DY258242 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RASN_MOUSE8.024e-2438.41GTPase NRas OS=Mus musculus GN=Nras PE=2 SV=1[more]
RASN_MONDO8.024e-2438.41GTPase NRas OS=Monodelphis domestica GN=NRAS PE=2 ... [more]
RASN_HUMAN8.024e-2438.41GTPase NRas OS=Homo sapiens GN=NRAS PE=1 SV=1[more]
RAB36_HUMAN8.024e-2435.20Ras-related protein Rab-36 OS=Homo sapiens GN=RAB3... [more]
RASL_COLTR1.048e-2332.06Ras-like protein OS=Colletotrichum trifolii GN=RAS... [more]
RASK_CYPCA1.048e-2337.80GTPase KRas OS=Cyprinus carpio GN=kras PE=2 SV=1[more]
RAS1_PHYPO1.048e-2335.98Ras-like protein 1 OS=Physarum polycephalum GN=RAS... [more]
RAS_CARAU1.369e-2337.80Ras-like protein (Fragment) OS=Carassius auratus P... [more]
RAS1_DROVI1.369e-2336.69Ras-like protein 1 OS=Drosophila virilis GN=Ras85D... [more]
RAB34_RAT1.369e-2338.51Ras-related protein Rab-34 OS=Rattus norvegicus GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3DB07ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258242 ID=DY258242; Name=DY258242; organism=Citrus clementina; type=EST; length=930bp
GAATGAATGTCGTAAACAGTAATTAAATAATAGCAATAATGAGTGGACAA
AGCTAAGTTCGAGAGGTGAGATAGAAAATTCTCCCGCACGACACAGCGCA
AACAAACTTTCCCTTTCATTTTCTTTTTCTCTTTCTCGCTCTCCAAACAG
GGCAAACGGACCGTCGCAAGATTCTTTACTTCCATCCAAAATCATGAGCA
ACGAATACGACTATCTGTTCAAGCTGTTGCTTATCGGAGACTCGTCCGTC
GGGAAGTCCTGCCTGCTGCTCCGATTTGCTGATGATTCTTATGTCGACAG
CTACATCAGTACCATTGGAGTTGATTTTAAAATAAGAACTGTGGAGCTGG
ATGGGAAGACGATCAAACTGCAGATTTGGGACACTGCTGGACAGGAGCGA
TTCAGGACTATAACTAGCAGTTATTACCGAGGAGCCCATGGAATCATAAT
TGTCTATGACGTAACTGAGATGGAGAGCTTCAATAATGTCAAGCGGTGGT
TGAATGAGATTGACAGATACGCAAATGACAGTGTATGCAAGCTTCTAGTT
TGGAACAAATGCGATTTAGTTGAGAACAAGGTTGTGGACACACAGACAGC
CAAGGCATTTGCAGATGAACTGGGGATTCCTTTCCTGGAGACGAGCGCCA
AAGATGCAATCAATGTGGAGCAGGCTTTCTTGACCATGGCTGGCGAGATT
AAGAAAAAAATGGGCAACCAGCCTACTGCAAACAAATCTTCTGGAACAGT
TCAGATGAAGGGACAGCCAATCCAGCAAAACAGCAACTGCTGTGGTTAGC
CGAGCATGTTATTTTACTACTACATATTAGCTGACTGATTGTAGACAGTT
TTAACGATGTTGACTGCATTATCTTATGAATCTTTTAATCTGTCAAATAT
TTATTTCCTGGTTTAAGTTCTTTCCCCGTT
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