DY258242

Overview
NameDY258242
Unique NameDY258242
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length930
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAB34_HUMAN (Ras-related protein Rab-34 OS=Homo sapiens GN=RAB34 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.369e-23
Identity = 62/160 (38.75%), Postives = 95/160 (59.38%), Query Frame = 2
Query:  221 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWL-NEIDRYANDSVCKLLVWNKCDL--VENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMA 691
            K++++GD SVGK+CL+ RF  D++  +Y +TIGVDF++   E+ G    LQ+WDTAGQERF+ I S+YYRGA  IIIV+++ ++ S  + K+WL + +      SV   LV +K DL       +  + A   A E+   +   S+    NV + F  +A
Sbjct:   54 KVIVVGDLSVGKTCLINRFCKDTFDKNYKATIGVDFEMERFEVLGIPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFNLNDVASLEHTKQWLADALKENDPSSVLLFLVGSKKDLSTPAQYALMEKDALQVAQEMKAEYWAVSSLTGENVREFFFRVA 213          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RASK_XENLA (GTPase KRas OS=Xenopus laevis GN=kras PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.788e-23
Identity = 66/181 (36.46%), Postives = 101/181 (55.80%), Query Frame = 2
Query:  218 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYAN-DSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK---KMGNQPTANKSSGT 748
            +KL+++G   VGKS L ++   + +VD Y  TI   ++ + V +DG+T  L I DTAGQE +  +   Y R   G + V+ +  ++SF ++  +  +I R  + + V  +LV NKC L  ++ VDT+ A+  A   GIPF+ETSAK    V+ AF T+  EI+K   KM       K S T
Sbjct:    4 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNIKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCAL-PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEKMSKDGKKKKKSKT 182          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAS3_DROME (Ras-like protein 3 OS=Drosophila melanogaster GN=R PE=2 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.788e-23
Identity = 59/165 (35.76%), Postives = 94/165 (56.97%), Query Frame = 2
Query:  218 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYAN-DSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKK 709
            +K++++G   VGKS L ++F    +V+ Y  TI   ++ + VE+DG+   L+I DTAG E+F  +   Y +   G ++VY +T   +FN+++    +I R  + D V  +LV NKCDL E +VV  +  K  A +    F+ETSAK  +NV   F  +  +I KK
Sbjct:    4 YKIVVLGSGGVGKSALTVQFVQCIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKELGKNLATQFNCAFMETSAKAKVNVNDIFYDLVRQINKK 167          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAS1_DROYA (Ras-like protein 1 OS=Drosophila yakuba GN=Ras85D PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.788e-23
Identity = 61/169 (36.09%), Postives = 98/169 (57.99%), Query Frame = 2
Query:  218 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYAN-DSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQ 721
            +KL+++G   VGKS L ++   + +VD Y  TI   ++ + V +DG+T  L I DTAGQE +  +   Y R   G ++V+ V   +SF ++  +  +I R  + + V  +LV NKCDL     V+ + A+  A + GIP++ETSAK  + V+ AF T+  EI+K   N+
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKDAEEVPMVLVGNKCDLASWN-VNNEQAREVAKQYGIPYIETSAKTRMGVDDAFYTLVREIRKDKDNK 170          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAS1_DROSI (Ras-like protein 1 OS=Drosophila simulans GN=Ras85D PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.788e-23
Identity = 61/169 (36.09%), Postives = 98/169 (57.99%), Query Frame = 2
Query:  218 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYAN-DSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQ 721
            +KL+++G   VGKS L ++   + +VD Y  TI   ++ + V +DG+T  L I DTAGQE +  +   Y R   G ++V+ V   +SF ++  +  +I R  + + V  +LV NKCDL     V+ + A+  A + GIP++ETSAK  + V+ AF T+  EI+K   N+
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKDAEEVPMVLVGNKCDLASWN-VNNEQAREVAKQYGIPYIETSAKTRMGVDDAFYTLVREIRKDKDNK 170          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAS1_DROPS (Ras-like protein 1 OS=Drosophila pseudoobscura pseudoobscura GN=Ras85D PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.788e-23
Identity = 62/169 (36.69%), Postives = 98/169 (57.99%), Query Frame = 2
Query:  218 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYAN-DSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQ 721
            +KL+++G   VGKS L ++   + +VD Y  TI   ++ + V +DG+T  L I DTAGQE +  +   Y R   G ++V+ V   +SF ++  +  +I R  + + V  +LV NKCDL    V + Q A+  A + GIP++ETSAK  + V+ AF T+  EI+K   N+
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKDAEEVPMVLVGNKCDLTTWNVKNEQ-AREVAKQYGIPYIETSAKTRMGVDDAFYTLVREIRKDKDNK 170          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAS1_DROPE (Ras-like protein 1 OS=Drosophila persimilis GN=Ras85D PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.788e-23
Identity = 62/169 (36.69%), Postives = 98/169 (57.99%), Query Frame = 2
Query:  218 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYAN-DSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQ 721
            +KL+++G   VGKS L ++   + +VD Y  TI   ++ + V +DG+T  L I DTAGQE +  +   Y R   G ++V+ V   +SF ++  +  +I R  + + V  +LV NKCDL    V + Q A+  A + GIP++ETSAK  + V+ AF T+  EI+K   N+
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKDAEEVPMVLVGNKCDLTTWNVKNEQ-AREVAKQYGIPYIETSAKTRMGVDDAFYTLVREIRKDKDNK 170          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAS1_DROME (Ras-like protein 1 OS=Drosophila melanogaster GN=Ras85D PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.788e-23
Identity = 61/169 (36.09%), Postives = 98/169 (57.99%), Query Frame = 2
Query:  218 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYAN-DSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQ 721
            +KL+++G   VGKS L ++   + +VD Y  TI   ++ + V +DG+T  L I DTAGQE +  +   Y R   G ++V+ V   +SF ++  +  +I R  + + V  +LV NKCDL     V+ + A+  A + GIP++ETSAK  + V+ AF T+  EI+K   N+
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKDAEEVPMVLVGNKCDLASWN-VNNEQAREVAKQYGIPYIETSAKTRMGVDDAFYTLVREIRKDKDNK 170          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAS1_DROMA (Ras-like protein 1 OS=Drosophila mauritiana GN=Ras85D PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.788e-23
Identity = 61/169 (36.09%), Postives = 98/169 (57.99%), Query Frame = 2
Query:  218 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYAN-DSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQ 721
            +KL+++G   VGKS L ++   + +VD Y  TI   ++ + V +DG+T  L I DTAGQE +  +   Y R   G ++V+ V   +SF ++  +  +I R  + + V  +LV NKCDL     V+ + A+  A + GIP++ETSAK  + V+ AF T+  EI+K   N+
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKDAEEVPMVLVGNKCDLASWN-VNNEQAREVAKQYGIPYIETSAKTRMGVDDAFYTLVREIRKDKDNK 170          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAS1_DROER (Ras-like protein 1 OS=Drosophila erecta GN=Ras85D PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.788e-23
Identity = 61/169 (36.09%), Postives = 98/169 (57.99%), Query Frame = 2
Query:  218 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYAN-DSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQ 721
            +KL+++G   VGKS L ++   + +VD Y  TI   ++ + V +DG+T  L I DTAGQE +  +   Y R   G ++V+ V   +SF ++  +  +I R  + + V  +LV NKCDL     V+ + A+  A + GIP++ETSAK  + V+ AF T+  EI+K   N+
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKDAEEVPMVLVGNKCDLASWN-VNNEQAREVAKQYGIPYIETSAKTRMGVDDAFYTLVREIRKDKDNK 170          
The following BLAST results are available for this feature:
BLAST of DY258242 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB34_HUMAN1.369e-2338.75Ras-related protein Rab-34 OS=Homo sapiens GN=RAB3... [more]
RASK_XENLA1.788e-2336.46GTPase KRas OS=Xenopus laevis GN=kras PE=2 SV=1[more]
RAS3_DROME1.788e-2335.76Ras-like protein 3 OS=Drosophila melanogaster GN=R... [more]
RAS1_DROYA1.788e-2336.09Ras-like protein 1 OS=Drosophila yakuba GN=Ras85D ... [more]
RAS1_DROSI1.788e-2336.09Ras-like protein 1 OS=Drosophila simulans GN=Ras85... [more]
RAS1_DROPS1.788e-2336.69Ras-like protein 1 OS=Drosophila pseudoobscura pse... [more]
RAS1_DROPE1.788e-2336.69Ras-like protein 1 OS=Drosophila persimilis GN=Ras... [more]
RAS1_DROME1.788e-2336.09Ras-like protein 1 OS=Drosophila melanogaster GN=R... [more]
RAS1_DROMA1.788e-2336.09Ras-like protein 1 OS=Drosophila mauritiana GN=Ras... [more]
RAS1_DROER1.788e-2336.09Ras-like protein 1 OS=Drosophila erecta GN=Ras85D ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAB3DB07ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258242 ID=DY258242; Name=DY258242; organism=Citrus clementina; type=EST; length=930bp
GAATGAATGTCGTAAACAGTAATTAAATAATAGCAATAATGAGTGGACAA
AGCTAAGTTCGAGAGGTGAGATAGAAAATTCTCCCGCACGACACAGCGCA
AACAAACTTTCCCTTTCATTTTCTTTTTCTCTTTCTCGCTCTCCAAACAG
GGCAAACGGACCGTCGCAAGATTCTTTACTTCCATCCAAAATCATGAGCA
ACGAATACGACTATCTGTTCAAGCTGTTGCTTATCGGAGACTCGTCCGTC
GGGAAGTCCTGCCTGCTGCTCCGATTTGCTGATGATTCTTATGTCGACAG
CTACATCAGTACCATTGGAGTTGATTTTAAAATAAGAACTGTGGAGCTGG
ATGGGAAGACGATCAAACTGCAGATTTGGGACACTGCTGGACAGGAGCGA
TTCAGGACTATAACTAGCAGTTATTACCGAGGAGCCCATGGAATCATAAT
TGTCTATGACGTAACTGAGATGGAGAGCTTCAATAATGTCAAGCGGTGGT
TGAATGAGATTGACAGATACGCAAATGACAGTGTATGCAAGCTTCTAGTT
TGGAACAAATGCGATTTAGTTGAGAACAAGGTTGTGGACACACAGACAGC
CAAGGCATTTGCAGATGAACTGGGGATTCCTTTCCTGGAGACGAGCGCCA
AAGATGCAATCAATGTGGAGCAGGCTTTCTTGACCATGGCTGGCGAGATT
AAGAAAAAAATGGGCAACCAGCCTACTGCAAACAAATCTTCTGGAACAGT
TCAGATGAAGGGACAGCCAATCCAGCAAAACAGCAACTGCTGTGGTTAGC
CGAGCATGTTATTTTACTACTACATATTAGCTGACTGATTGTAGACAGTT
TTAACGATGTTGACTGCATTATCTTATGAATCTTTTAATCTGTCAAATAT
TTATTTCCTGGTTTAAGTTCTTTCCCCGTT
back to top