DY258242

Overview
NameDY258242
Unique NameDY258242
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length930
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RB32C_DICDI (Ras-related protein Rab-32C OS=Dictyostelium discoideum GN=rab32C PE=3 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 5.201e-23
Identity = 61/195 (31.28%), Postives = 105/195 (53.85%), Query Frame = 2
Query:  221 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDR-YANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGI-PFLETSAKDAINVEQAFLTMAGEIKK--KMGNQPTANKSSGTVQMKGQPIQQNSNCC 793
            K+L++G  + GK+ ++ R+  +++   Y  TIGVDF+ + +E+ G+ + LQ+WD AGQERF  +T  Y++ AHG +IV+D T   +F   K W ++ID  + N+++  +L+ NKCDL+       +    F ++     +  TSAK+   + +A   +   I +  +   Q T  K S   Q       Q+  CC
Sbjct:   30 KILVVGKLACGKTSIIQRYCHNNFQPKYKPTIGVDFQQKVLEIMGQKVLLQLWDIAGQERFGHMTRVYFQNAHGAVIVFDATRSGTFLGAKAWKDDIDYCFNNENLPTILLANKCDLLTPPYTFPEDINTFCEQNRFNKYFYTSAKEDTGINEALEELVKIILESYQTQEQSTGFKLSDQSQSTETTPTQSKTCC 224          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RASH_RAT (GTPase HRas OS=Rattus norvegicus GN=Hras1 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 5.201e-23
Identity = 60/164 (36.59%), Postives = 96/164 (58.54%), Query Frame = 2
Query:  218 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYA-NDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 706
            +KL+++G   VGKS L ++   + +VD Y  TI   ++ + V +DG+T  L I DTAGQE +  +   Y R   G + V+ +   +SF ++ ++  +I R   +D V  +LV NKCDL   + V+++ A+  A   GIP++ETSAK    VE AF T+  EI++
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RASH_HUMAN (GTPase HRas OS=Homo sapiens GN=HRAS PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 5.201e-23
Identity = 60/164 (36.59%), Postives = 96/164 (58.54%), Query Frame = 2
Query:  218 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYA-NDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 706
            +KL+++G   VGKS L ++   + +VD Y  TI   ++ + V +DG+T  L I DTAGQE +  +   Y R   G + V+ +   +SF ++ ++  +I R   +D V  +LV NKCDL   + V+++ A+  A   GIP++ETSAK    VE AF T+  EI++
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: DJC27_MOUSE (DnaJ homolog subfamily C member 27 OS=Mus musculus GN=Dnajc27 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 5.201e-23
Identity = 54/197 (27.41%), Postives = 111/197 (56.35%), Query Frame = 2
Query:  221 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYAN-----DSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTM---AGEIKKKMGNQPTANKSSGTVQMKGQPIQQNSN 787
            K++ +G++ VGKSC++ R+ +  +V  Y++TIG+D+ +  V++  + IK+ I+D AG   F  + + +Y+   G+I+VYDV + +SF+ +  WL E+ +        D++  ++  NK D  +++ +D    + +A+  G  + ETSA+    + + F T      ++ +  G +PTA+ S+   + +   I++  N
Sbjct:   18 KVISMGNAEVGKSCIIKRYCEKRFVSKYLATIGIDYGVTKVQVRDREIKVNIFDMAGHPFFFEVRNEFYKDTQGVILVYDVGQKDSFDALDSWLAEMKQELGPHGNMDNIVFVVCANKIDCSKHRCIDESEGRLWAESKGFLYFETSAQTGEGINEMFQTFYLSIVDLCENGGKRPTASSSASFTKEQADTIRRIRN 214          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RBL2B_HUMAN (Rab-like protein 2B OS=Homo sapiens GN=RABL2B PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.793e-23
Identity = 61/174 (35.06%), Postives = 96/174 (55.17%), Query Frame = 2
Query:  164 SQDSLLPSKIMSNEYDY--LFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAF 679
            ++D   PS++   +YD     K++ +GDS+VGKS L+ RF  D +    +ST  +     T  +DG+TI +  WDTAGQERF+++ +SYY  AH  I+V+DV    ++ N+  W  E+  +  +  C ++V NK D     +  TQ +  FA +  +P    SA D  NV + F
Sbjct:    2 AEDKTKPSELDQGKYDADDNVKIICLGDSAVGKSKLMERFLMDGFQPQQLSTYALTLYKHTATVDGRTILVDFWDTAGQERFQSMHASYYHKAHACIMVFDVQRKVTYRNLSTWYTELREFRPEIPC-IVVANKID----DINVTQKSFNFAKKFSLPLYFVSAADGTNVVKLF 170          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RASH_MSVNS (GTPase HRas OS=Murine sarcoma virus NS.C58 GN=H-RAS PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.793e-23
Identity = 60/164 (36.59%), Postives = 96/164 (58.54%), Query Frame = 2
Query:  218 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYA-NDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 706
            +KL+++G   VGKS L ++   + +VD Y  TI   ++ + V +DG+T  L I DTAGQE +  +   Y R   G + V+ +   +SF ++ ++  +I R   +D V  +LV NKCDL   + V+++ A+  A   GIP++ETSAK    VE AF T+  EI++
Sbjct:    4 YKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: DJC27_RAT (DnaJ homolog subfamily C member 27 OS=Rattus norvegicus GN=Dnajc27 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.793e-23
Identity = 53/194 (27.32%), Postives = 110/194 (56.70%), Query Frame = 2
Query:  221 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYAN-----DSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTM---AGEIKKKMGNQPTANKSSGTVQMKGQPIQQ 778
            K++ +G++ VGKSC++ R+ +  +V  Y++TIG+D+ +  V++  + IK+ I+D AG   F  + + +Y+   G+I+VYDV + +SF+ +  WL E+ +        +++  ++  NK D  +++ +D    + +A+  G  + ETSA+    + + F T      ++ +  G +PTAN S+   + +   I++
Sbjct:   18 KVISMGNAEVGKSCIIKRYCEKRFVSKYLATIGIDYGVTKVQVRDREIKVNIFDMAGHPFFFEVRNEFYKDTQGVILVYDVGQKDSFDALDSWLAEMKQELGPHGNMENIVFVVCANKIDCSKHRCIDESEGRLWAESRGFLYFETSAQTGEGINEMFQTFYMSIVDLCENGGKRPTANSSASYTKEQADTIRR 211          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: DJC27_HUMAN (DnaJ homolog subfamily C member 27 OS=Homo sapiens GN=DNAJC27 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.793e-23
Identity = 54/197 (27.41%), Postives = 109/197 (55.33%), Query Frame = 2
Query:  221 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYAN-----DSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTM---AGEIKKKMGNQPTANKSSGTVQMKGQPIQQNSN 787
            K++ +G++ VGKSC++ R+ +  +V  Y++TIG+D+ +  V +  + IK+ I+D AG   F  + + +Y+   G+I+VYDV + +SF+ +  WL E+ +        +++  ++  NK D  +++ VD    + +A+  G  + ETSA+    + + F T      ++ +  G +PT N S+   + +   I++  N
Sbjct:   18 KVISMGNAEVGKSCIIKRYCEKRFVSKYLATIGIDYGVTKVHVRDREIKVNIFDMAGHPFFYEVRNEFYKDTQGVILVYDVGQKDSFDALDAWLAEMKQELGPHGNMENIIFVVCANKIDCTKHRCVDESEGRLWAESKGFLYFETSAQTGEGINEMFQTFYISIVDLCENGGKRPTTNSSASFTKEQADAIRRIRN 214          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RASH_RRASV (Transforming protein p29 OS=Rasheed rat sarcoma virus GN=RAS PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.872e-23
Identity = 60/164 (36.59%), Postives = 96/164 (58.54%), Query Frame = 2
Query:  218 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYA-NDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 706
            +KL+++G   VGKS L ++   + +VD Y  TI   ++ + V +DG+T  L I DTAGQE +  +   Y R   G + V+ +   +SF ++ ++  +I R   +D V  +LV NKCDL  +  V+++ A+  A   GIP++ETSAK    VE AF T+  EI++
Sbjct:   63 YKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAAH-TVESRQAQDLARSYGIPYIETSAKTRPGVEDAFYTLVREIRQ 224          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAS1_YEAST (Ras-like protein 1 OS=Saccharomyces cerevisiae GN=RAS1 PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 1.159e-22
Identity = 60/174 (34.48%), Postives = 95/174 (54.60%), Query Frame = 2
Query:  218 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYAN-DSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANK 736
            +K++++G   VGKS L ++F    +VD Y  TI   ++ + V +D K   L I DTAGQE +  +   Y R   G ++VY VT   SF+ +  +  +I R  + D +  ++V NK DL   + V  +     A +L  PFLETSAK AINV++AF ++   ++   G   + N+
Sbjct:   11 YKIVVVGGGGVGKSALTIQFIQSYFVDEYDPTIEDSYR-KQVVIDDKVSILDILDTAGQEEYSAMREQYMRTGEGFLLVYSVTSRNSFDELLSYYQQIQRVKDSDYIPVVVVGNKLDLENERQVSYEDGLRLAKQLNAPFLETSAKQAINVDEAFYSLIRLVRDDGGKYNSMNR 183          
The following BLAST results are available for this feature:
BLAST of DY258242 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB32C_DICDI5.201e-2331.28Ras-related protein Rab-32C OS=Dictyostelium disco... [more]
RASH_RAT5.201e-2336.59GTPase HRas OS=Rattus norvegicus GN=Hras1 PE=1 SV=... [more]
RASH_HUMAN5.201e-2336.59GTPase HRas OS=Homo sapiens GN=HRAS PE=1 SV=1[more]
DJC27_MOUSE5.201e-2327.41DnaJ homolog subfamily C member 27 OS=Mus musculus... [more]
RBL2B_HUMAN6.793e-2335.06Rab-like protein 2B OS=Homo sapiens GN=RABL2B PE=2... [more]
RASH_MSVNS6.793e-2336.59GTPase HRas OS=Murine sarcoma virus NS.C58 GN=H-RA... [more]
DJC27_RAT6.793e-2327.32DnaJ homolog subfamily C member 27 OS=Rattus norve... [more]
DJC27_HUMAN6.793e-2327.41DnaJ homolog subfamily C member 27 OS=Homo sapiens... [more]
RASH_RRASV8.872e-2336.59Transforming protein p29 OS=Rasheed rat sarcoma vi... [more]
RAS1_YEAST1.159e-2234.48Ras-like protein 1 OS=Saccharomyces cerevisiae GN=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3DB07ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258242 ID=DY258242; Name=DY258242; organism=Citrus clementina; type=EST; length=930bp
GAATGAATGTCGTAAACAGTAATTAAATAATAGCAATAATGAGTGGACAA
AGCTAAGTTCGAGAGGTGAGATAGAAAATTCTCCCGCACGACACAGCGCA
AACAAACTTTCCCTTTCATTTTCTTTTTCTCTTTCTCGCTCTCCAAACAG
GGCAAACGGACCGTCGCAAGATTCTTTACTTCCATCCAAAATCATGAGCA
ACGAATACGACTATCTGTTCAAGCTGTTGCTTATCGGAGACTCGTCCGTC
GGGAAGTCCTGCCTGCTGCTCCGATTTGCTGATGATTCTTATGTCGACAG
CTACATCAGTACCATTGGAGTTGATTTTAAAATAAGAACTGTGGAGCTGG
ATGGGAAGACGATCAAACTGCAGATTTGGGACACTGCTGGACAGGAGCGA
TTCAGGACTATAACTAGCAGTTATTACCGAGGAGCCCATGGAATCATAAT
TGTCTATGACGTAACTGAGATGGAGAGCTTCAATAATGTCAAGCGGTGGT
TGAATGAGATTGACAGATACGCAAATGACAGTGTATGCAAGCTTCTAGTT
TGGAACAAATGCGATTTAGTTGAGAACAAGGTTGTGGACACACAGACAGC
CAAGGCATTTGCAGATGAACTGGGGATTCCTTTCCTGGAGACGAGCGCCA
AAGATGCAATCAATGTGGAGCAGGCTTTCTTGACCATGGCTGGCGAGATT
AAGAAAAAAATGGGCAACCAGCCTACTGCAAACAAATCTTCTGGAACAGT
TCAGATGAAGGGACAGCCAATCCAGCAAAACAGCAACTGCTGTGGTTAGC
CGAGCATGTTATTTTACTACTACATATTAGCTGACTGATTGTAGACAGTT
TTAACGATGTTGACTGCATTATCTTATGAATCTTTTAATCTGTCAAATAT
TTATTTCCTGGTTTAAGTTCTTTCCCCGTT
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