DY258242

Overview
NameDY258242
Unique NameDY258242
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length930
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAS_LENED (Ras-like protein OS=Lentinula edodes PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.581e-22
Identity = 66/203 (32.51%), Postives = 99/203 (48.77%), Query Frame = 2
Query:  218 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYAN-DSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANK---------SSGTVQMKGQPIQQNSNCCG 796
            +KL+++G   VGKS L ++F    +VD Y  TI   ++ + V +D +   L + DTAGQE +  +   Y R   G ++VY +T   SF  +  +  +I R  + D+   ++V NKCDL   + V     +  A   G  F+ETSAK  INV+QAF  +  EI+K    Q T  +           GT   K    +    CCG
Sbjct:   11 YKLVVVGGGGVGKSALTIQFIQSHFVDEYDPTIEDSYRKQCV-IDDEVALLDVLDTAGQEEYGAMREQYMRTGEGFLLVYSITSRNSFEEISTFHQQILRVKDQDTFPVVVVANKCDLEYERQVGMNEGRDLARHFGCKFVETSAKVRINVDQAFQDLVREIRKYNKEQQTTGRMMTGGGGGGPPGTYAGKDPNDEGAGGCCG 212          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: DJC27_CHICK (DnaJ homolog subfamily C member 27 OS=Gallus gallus GN=DNAJC27 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.581e-22
Identity = 54/197 (27.41%), Postives = 108/197 (54.82%), Query Frame = 2
Query:  221 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYAN-----DSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAG---EIKKKMGNQPTANKSSGTVQMKGQPIQQNSN 787
            K++ +G++ VGKSC++ R+ +  +V  Y++TIG+D+ +  V++  + IK+ I+D AG   F  + + +Y+   G+I+VYDV + ESF+ +  WL E+ +        D++  ++  NK D  +++ VD    + +A+  G  + ETSA+    + + F T      ++    G +P ++   G  + +   I++  N
Sbjct:   18 KVISMGNAEVGKSCIIKRYCEKRFVPKYLATIGIDYGVTKVQVRDREIKVNIFDMAGHPFFYEVRNEFYKDTQGVILVYDVGQKESFDALDAWLAEMKQELGPHGNMDNIVFVVCANKIDCTKHRSVDESEGRLWAESRGFLYFETSAQTGEGINEMFQTFYSAIIDLCDNGGKRPPSSMGVGFTKEQADAIRRIRN 214          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RASL_COPCI (24 kDa Ras-like protein OS=Coprinopsis cinerea GN=CC-RAS PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.403e-22
Identity = 59/171 (34.50%), Postives = 91/171 (53.22%), Query Frame = 2
Query:  218 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYAN-DSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPT 727
            +KL+++G   VGKS L ++F    +VD Y  TI   ++ + + +D +   L + DTAGQE +  +   Y R   G ++VY +T   SF  +  +  +I R  + DS   ++V NKCDL   + V     +  A   G  F+ETSAK  INV++AF  +  EI+K    Q T
Sbjct:   11 YKLVVVGGGGVGKSALTIQFIQSHFVDEYDPTIEDSYRKQCI-IDDEVALLDVLDTAGQEEYGAMREQYMRTGEGFLLVYSITSRNSFEEISIFHQQILRVKDQDSFPVIVVANKCDLEYERQVGMNEGRDLAKHFGCKFIETSAKQRINVDEAFSNLVREIRKYNREQQT 180          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RASC_DICDI (Ras-like protein rasC OS=Dictyostelium discoideum GN=rasC PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.403e-22
Identity = 60/166 (36.14%), Postives = 90/166 (54.22%), Query Frame = 2
Query:  215 LFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKL-LVWNKCDLVE-NKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 706
            L KL+++GD  VGKS L ++   + ++  Y  TI   ++ + V +D +   L I DTAGQE +  +   Y R   G +IVY +    SF  V  +  +I R  + S   + ++ NK DL + ++ V     K  A   G PFLETSAK  +NVE+AF T+  EIK+
Sbjct:    4 LLKLVIVGDGGVGKSALTIQLTQNQFIAEYDPTIENSYR-KQVNIDEEVYMLDILDTAGQEEYSAMRDQYIRSGRGFLIVYSIISRASFEAVTTFREQILRVKDLSTYPIVIIGNKADLPDKDRKVPPMEGKELAKSFGAPFLETSAKSRVNVEEAFFTLVREIKR 168          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RABL_MIMIV (Probable Rab-related GTPase OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R214 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.403e-22
Identity = 69/215 (32.09%), Postives = 112/215 (52.09%), Query Frame = 2
Query:  170 DSLLPSKIMSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTV-ELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYANDSVCKLLVWNKCDLVENK-VVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGTVQMKGQPIQQ-----NSNCC 793
            +S +  K+ +N Y    K++LIG S VGKS ++ +F  +  + +   TIG  F  + V   +GKT+KL IWDTAGQERFR+IT  YY  + G ++V+DVT+ ESF++V  W+N++    + +   L+V NK D+ +N   V     K F  +    ++  S+ ++  V   F  M  ++ +   N  +       +  K   I       + NCC
Sbjct:    2 NSYIKEKMENNGY----KIILIGSSGVGKSSIVHQFLFNRKISNVSPTIGAAFASKQVIAKNGKTLKLNIWDTAGQERFRSITKMYYTNSLGCLVVFDVTDRESFDDVYYWINDLRINCHTTYYILVVANKIDIDKNNWRVSENEIKKFCRDNDCDYVFASSFESDTVNNLFGKMIDKMSEIKINPDSRRNDIIYLSDKSSGIDDFIDKISQNCC 212          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: DJC27_BOVIN (DnaJ homolog subfamily C member 27 OS=Bos taurus GN=DNAJC27 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.403e-22
Identity = 53/194 (27.32%), Postives = 109/194 (56.19%), Query Frame = 2
Query:  221 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDR----YAN-DSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTM---AGEIKKKMGNQPTANKSSGTVQMKGQPIQQ 778
            K++ +G++ VGKSC++ R+ +  +V  Y++TIG+D+ +  V++  + IK+ I+D AG   F  + + +Y+   G+I+VYDV + +SF+ +  WL E+ +    + N +++   +  NK D  +++ VD    + +A+  G  + ETSA+    + + F T      ++ +  G +P  N S+   + +   I++
Sbjct:   18 KVISMGNAEVGKSCIIKRYCEKRFVSKYLATIGIDYGVTKVQVRDREIKVNIFDMAGDPFFYEVRNEFYKDTQGVILVYDVGQKDSFDALDTWLAEMKQDLGPHGNMENIVFAVCANKIDCTKHRCVDESEGRLWAESKGFLYFETSAQTGEGINEMFQTFYLSIVDLCENGGKRPNTNSSASFTKEQADTIRR 211          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAS2_HYDMA (Ras-like protein RAS2 OS=Hydra magnipapillata GN=RAS2 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.751e-22
Identity = 64/184 (34.78%), Postives = 98/184 (53.26%), Query Frame = 2
Query:  194 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYAN-DSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSS 742
            MS + D  +KL+++G   VGKS L ++F    +V  Y  TI   ++ + V +D K   L I DTAGQE F  +   Y R   G ++V+ VT+  SF+ + R+  +I R  + +    +LV NK DL   + V T  A+    +L + +LE+SAK  INV+ AF  +   I+        ANK+S
Sbjct:    1 MSGDLDRQYKLVVVGGGGVGKSALTIQFIQSHFVQDYDPTIEDSYRKQCV-IDDKVAHLDILDTAGQEEFSAMRDEYMRTGEGFLLVFSVTDRSSFDEIPRFHTQILRVKDIEEFPMILVGNKSDLENERTVSTAEAQELGRKLKVSYLESSAKQRINVDAAFHDLVRAIR-------NANKAS 176          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RASN_DANRE (GTPase NRas OS=Danio rerio GN=nras PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 7.510e-22
Identity = 62/163 (38.04%), Postives = 92/163 (56.44%), Query Frame = 2
Query:  218 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYA-NDSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIK 703
            +KL+++G   VGKS L ++   + +VD Y  TI   ++ + V +DG+T  L I DTAGQE +  +   Y R   G + V+ +   +SF +V  +  +I R   +D V  +LV N CDL   + VDT+ A+  A   GI F+ETSAK    VE AF T+  EI+
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADVHLYREQIKRVKDSDDVPMVLVGNICDLA--RTVDTKQAQELARSYGIEFVETSAKTRQGVEDAFYTLVREIR 163          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: RAS1_DROMO (Ras-like protein 1 OS=Drosophila mojavensis GN=Ras85D PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.281e-21
Identity = 60/169 (35.50%), Postives = 94/169 (55.62%), Query Frame = 2
Query:  218 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYAN-DSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQ 721
            +KL+++G   VGKS L ++   + +VD Y  TI   ++ + V +DG+T  L I DTAGQE +  +   Y R   G ++V+ V   +SF ++  +  +I R  + + V  +LV NKCDL    V         A + GIP++ETSAK  + V+ AF T+  EI+K   N+
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKDAEEVPMVLVGNKCDLPSWNV---------AKQYGIPYIETSAKTRMGVDDAFYTLVREIRKDKDNK 162          
BLAST of DY258242 vs. ExPASy Swiss-Prot
Match: DJ27A_XENLA (DnaJ homolog subfamily C member 27-A OS=Xenopus laevis GN=dnajc27-A PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.281e-21
Identity = 54/198 (27.27%), Postives = 106/198 (53.54%), Query Frame = 2
Query:  221 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKRWLNEIDRYAN-----DSVCKLLVWNKCDLVENKVVDTQTAKAFADELGIPFLETSAKDAINVE---QAFLTMAGEIKKKMGNQPTANKSSGTVQMKGQPIQQNSNC 790
            K++ +G++ VGKSC++ R+ +  +V  Y +TIG+D+ +  V +  + IK+ I+D AG   F  + + +Y+   G+I+VYDV   E+F ++  WL E+ +        D++   +  NK D  +++ VD    + +++  G  + ETSA+    +    QAF +   ++    G +P +  + G  + +   I++  NC
Sbjct:   18 KVISMGNAEVGKSCIIKRYCEKRFVPKYQATIGIDYGVTKVHIKDREIKVNIFDMAGHPFFYEVRNEFYKDTQGVILVYDVGHKETFESLDGWLAEMKQELGPQGNIDNIVFAVCANKIDSTKHRSVDESEGRLWSESKGFLYFETSAQSGEGINEMFQAFYSAIVDLCDNGGKRPVSAINIGFTKEQADSIRRIRNC 215          
The following BLAST results are available for this feature:
BLAST of DY258242 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAS_LENED2.581e-2232.51Ras-like protein OS=Lentinula edodes PE=3 SV=1[more]
DJC27_CHICK2.581e-2227.41DnaJ homolog subfamily C member 27 OS=Gallus gallu... [more]
RASL_COPCI4.403e-2234.5024 kDa Ras-like protein OS=Coprinopsis cinerea GN=... [more]
RASC_DICDI4.403e-2236.14Ras-like protein rasC OS=Dictyostelium discoideum ... [more]
RABL_MIMIV4.403e-2232.09Probable Rab-related GTPase OS=Acanthamoeba polyph... [more]
DJC27_BOVIN4.403e-2227.32DnaJ homolog subfamily C member 27 OS=Bos taurus G... [more]
RAS2_HYDMA5.751e-2234.78Ras-like protein RAS2 OS=Hydra magnipapillata GN=R... [more]
RASN_DANRE7.510e-2238.04GTPase NRas OS=Danio rerio GN=nras PE=2 SV=1[more]
RAS1_DROMO1.281e-2135.50Ras-like protein 1 OS=Drosophila mojavensis GN=Ras... [more]
DJ27A_XENLA1.281e-2127.27DnaJ homolog subfamily C member 27-A OS=Xenopus la... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3DB07ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258242 ID=DY258242; Name=DY258242; organism=Citrus clementina; type=EST; length=930bp
GAATGAATGTCGTAAACAGTAATTAAATAATAGCAATAATGAGTGGACAA
AGCTAAGTTCGAGAGGTGAGATAGAAAATTCTCCCGCACGACACAGCGCA
AACAAACTTTCCCTTTCATTTTCTTTTTCTCTTTCTCGCTCTCCAAACAG
GGCAAACGGACCGTCGCAAGATTCTTTACTTCCATCCAAAATCATGAGCA
ACGAATACGACTATCTGTTCAAGCTGTTGCTTATCGGAGACTCGTCCGTC
GGGAAGTCCTGCCTGCTGCTCCGATTTGCTGATGATTCTTATGTCGACAG
CTACATCAGTACCATTGGAGTTGATTTTAAAATAAGAACTGTGGAGCTGG
ATGGGAAGACGATCAAACTGCAGATTTGGGACACTGCTGGACAGGAGCGA
TTCAGGACTATAACTAGCAGTTATTACCGAGGAGCCCATGGAATCATAAT
TGTCTATGACGTAACTGAGATGGAGAGCTTCAATAATGTCAAGCGGTGGT
TGAATGAGATTGACAGATACGCAAATGACAGTGTATGCAAGCTTCTAGTT
TGGAACAAATGCGATTTAGTTGAGAACAAGGTTGTGGACACACAGACAGC
CAAGGCATTTGCAGATGAACTGGGGATTCCTTTCCTGGAGACGAGCGCCA
AAGATGCAATCAATGTGGAGCAGGCTTTCTTGACCATGGCTGGCGAGATT
AAGAAAAAAATGGGCAACCAGCCTACTGCAAACAAATCTTCTGGAACAGT
TCAGATGAAGGGACAGCCAATCCAGCAAAACAGCAACTGCTGTGGTTAGC
CGAGCATGTTATTTTACTACTACATATTAGCTGACTGATTGTAGACAGTT
TTAACGATGTTGACTGCATTATCTTATGAATCTTTTAATCTGTCAAATAT
TTATTTCCTGGTTTAAGTTCTTTCCCCGTT
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